morexGenes - Barley RNA-seq Database

Contig contig_49536
Source Contig contig_49536
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49536 (6990 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_49536

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64939	2	1309 bp	MLOC_64939.2	Available	Available	LOC_Os07g36130.1, FRAME:-3, EVALUE:2e-53, 13107.m03705 protein core histone H2A/H2B/H3/H4, putative, expressed
CDS Structure of MLOC_64939

Contig Sequence (6990 bp)

>contig_49536 6990 assembly3_WGSMorex_rbca.fasta
ATGTGCCCGCCGCGTTCCCACACAAAAGTGCATAGAAGCGTGGCCGGCGGGGACGTTGGG
GCCGGGCCCCTTCCCGGGGGGCCGGGCGGAACTCCGGGAAGTGACCCTGTTGAGGCCCGC
GACATCGACGCACATGCGCGCCGCGACGGCCCCTCGGGAATGATGAGCCTCCTCAGGCAG
CGCTCCATGCAACGCATGGCGCGCGCTTCCCACAGCTTGTTGATCTCCCGGGCGATGAGG
TCCTGAGCCCCCGACGCGTGACCTTGTACTCCTTGCTCATGAGGGCGCATGACAAGGCGC
CTCTCCACGTGGTGTCTGAGCTCCTTCCTCGATGCAGCAGCCAGGTCGGATGCTTTCCTG
ATGGAAGCCCCCGAGCCCGGCCAGAGGGGGGTGCCGGACACGCGTCCCTAGGCCTGAGGG
AGAAAAGCGCCCGTGGCACGCACGGGGCTCGTGGCCTTGGCCTCGTCCATCGGGCCTTTT
GCCTTGATGGAACCAAAGGCACACAGTGACTGTCTCTTCCTCGGGGGTGCGGCCCCGCGA
GGCCCACCGCCTTCGGCATCATCTAAGCGCTCCGCGACAATGGCCTTGTAAGCATGCTCT
AGGGAGCAGGCCGCTGCCTTCTCCTCGCACGTGACGATGATGCCATTGTAGCCCGGCATC
TTGAGGACGTTGTAGTTGTGGTGTGTCGCAACCATGAACTTGGCCAGTGCGAGGTAGCAT
AGGATGGCATTGTACGGGAGCCCGATGTGCGCCACGTCGAAGTCAATGTGTTCAGTGTTA
TAGTTGTCGCGCGTGGTGAAGGTGACCGGGAGGCAGACCTATCCCAGCGGGATTGTGGAT
CAACTGGTCACCCCCGAGAACGGCCTGGTCGACATAAGCTGGTGATAAGGCACCTAGAGC
GTGTCGAAAGTTTCCACACATAGCACGTTAAGGCCCGCTCCTCCACCGATGAGAGTCTTG
GTGACCGCCACGTTGCTCATGGTGTGCGTGCACGTCATGGGAAATGTGCCTGCGACAGCC
GCAGACTTCGGGTTGTCCTGGGCGTCAACAGTGATGAGGTATTAGGACCACTTGAGGGGA
CTCGCAGCCCCCGGCTTCGAGATGACGGCGTTCACCTCGCGGCAAACCTGCTTGAAGTGG
AGGTTGGACGAGGGGGTGTGGGGCCCACCGAGGATGAAGGCCGCCGCGTGAGGCTCCTAG
TAGGCCTCGACCTCCTCATCACGTTGGTCGCCCTCGTTCATTCGCGAAGGCGGTGGAGGC
AGTGCAGGGAGCTACGCGTTGTCCCGAGGGCGCATCTCGCGAGGCCGGTCGCGCCAGCCG
TTGTCACGAGGCTGATCGTACCATCCCCGGCGCAAGTTGCAGTTATGGTCGTCCCATGTG
CCGCCACTGCGGCCAGCACCCCGATCATTGTGCTCCCGGTGCTAGAGGACTCGCTCACCC
CGGAGGACACTCGGCTCCTCGCAATCTTCAGTTTCCTGGTTGTGCACGTCGTGGTAGATG
CAGTATGGACGGTGCTCCTTCTCGGGCACGCTCCGCTCGCTGCCACGCTTCTACTCGGGC
TCGGCTGCGAGCACGCTAGGCCCCTTGCGCTTGGCCTCCTTGGCCTTGGCCTTGGTGTCC
TCGGGCGCATCGTTAGGGTTGTCGCTGGCGAATAGGCGGCCCTCTTCAGCCCTGGCACCT
TGCGGCCCAAGTTGAACAATTCCATGGACGTGCTCAGGGTTTCGTTGATGGCGAGCTTTC
CGCACATCTTGAGGTCCTTGACGCCGTTAGTGAACGCCATGATGACCGCCTCGTCGGTGG
CGTGCGGGATCTTGTTGCGCACCTGACCGAACCTCTCGATGTACTTGCGGAGGGTCTAGC
CAAGGCGCTGCTTCACGCAACGTAGGTCGTTGACGGGGAGGGGCGGTCGTGCTTGCCCTT
GATGTTGGCGACGAACAGCTCGGAGGGGCCACTCCACGAAGAGACCGATCCCTCGGGCAG
GTTCAGGAGCCAGGACCGCACGTCGTCCTTGAGCGCCATCAGGAGCCAGTTCGCCATGAC
CTTGTCATCGTCGCCGGCCGCTTCGACGCTCAGGGCATAGAGCTACAGAAACTCCGCGGG
GTCGAGGGAGTCGTCATAGTGCGGGGGCAGGTCGGGCTTGAACTTGGCCGGCCAAGCCAC
CCTGCGCGGCTCGCGGGTGAAGGCCTGACAACCCACGGTGCTTGCATGGCTGCATGCGTG
AGTGCAGTCCGGCGACGGCGACGTCCTCGACGACCCTCTCAAGGCGCTCGCGCTGTTGCT
CGAGGACCGCACGCACATCCATCGGCGCCTCGTGCTAGAGGATCTGATAGTTGTCTACGT
CCCCCTGGTCGCGTGGCATCGGCTCACGTGGCGGGTTTTCGGGGCGCACGCCTCACCCGG
GCTCGACATGGCTACCACGCGCGGGAGGGAGTGGCGGCGGCGCCCCTGGTCCTCCTCATC
GTCGCGGGACGGAGAAGGACGAAGCAAACGAGAGGGCGTCGGGGCTTCCCCGGTGGCGGT
GACGAGCTGGGTGATGCGTGTTAGCCACGCGTCGTAGCCGGCGTTCGCCGGACGGTAACA
GAGTAGCTCGCGGGCCATGAGCAACGAGTCCTACGCGTTCACCCGCTTCATACGGGCGTG
GGAGGAAGAAGTCGTGGCAGTGCGGCCTTCCCTCTGGGCGGAATGGTGCACGGACGAAGC
TTGCTGCTCGCGGGCCACAGGGTCGGTAGTCGCGGCCTCGGCCCCAGCGGAGTGACGACG
GACGTCGGGGCCTGCGGACGCAGTCACCGTGACCCGTGTAGCCCTACGCTAGGCGTGCAT
ATGGCGAGCGTCAACCATGGGGTTGATGATGGAGCGAAATCGGAACGGAGGAGCGGCTGC
ACACCCCTACCTGGCGCGTCAAATGTCTAAATCGGGACCTCGCAGGCCCAAGGAAAGGTT
CCAACACTTGGGTGTGCTCGCCCTCCAACCCTGTTCAACCTCTTAACCTCACAACGACTC
TGCAGTGGCGCGAGCTAGGACGCGCGGCAGTTTATCCAGGTTTGGACCATCTTGTGGTGT
AAAACTCTACTCCTACTTGGATAGATTGCTCGAGGTGGAAGAACAAAACAAATATGGGTA
CTTGTCCTAATATAACACACACAACCCCCCCCCCATCCCCCTCTACAAAGGTCGGACCTC
TCGTTTATATCGGCCTTGATCCTCTTCCCCGAAACACACTCGGCGAGAAGGGCAGCCACA
ACGGTCATTTTGAAAAGGGACAAGACTACAACTCACCATGACAACGACAGTCTTCACCTG
TAAAAGCCTTTTTAGTGACGCTTGGGTGGGCTCGAAGCTGACCTCCGTCCTGTCGAGCCC
CAGCCTTCGTCCTCTTGCACCGATTGTGTAACCTTCGACGGCTCGAAGATGACCTCCGTC
CTACCGAGCCCTAGCCTTCGTCCTCTTGCATCGATTGCGAAACCTTCGACGGATTACCTC
GAGAACCCGCAGCTGACCTCGATTACCTTAATCAGGGAAAAGCCTCTCCGCGGATGCCTG
CTAGCACAACCTTGAACCGCATGACCCCGGCAAACCGCCCTCGGCAGATCCGCTGAGGCC
TGCGAAGCGCAATGTGCCTTGGGTACCTCCGATCTCATAGCACGACAAATACATATTGGA
GGGAGTATATGCAAACGGTTGAGTAATATACACGTCGATGGAAGAGCTGTCGCGTCGACG
GTACACCTGAGATCTCGATCCCTTCGAGACATTGTTACGGCGGTTAATACTGATGCTGGG
CAAACAAACGCATCTACCTTCAAACTACTCTGTAGAGCAGGTTTGCCACGGCCAACATAA
CAGTCGTAAGTTCGTTCAACAGATGATTGCCTAAAGCAATCCTAGGATAAGGTCCGTTGT
GGGAGGGATTGATACTAATTTGGAATGAAATTTGTGAAAATATAACGTTGCAGAATGAAA
TCTATGCAGCACTCGTAAGTCCGTACTTCGATCATTCTGGTCTCATCACAAGAATGGGGG
ATGGAAATTGGTTACATATCATTTGTTCCACCAGAAACACATAATATTTATAAAAACACG
ATGTAATTATGTACTACCAAAAGCCAATGAAATATTGGCAAACAATTAGCCAGAGCATGG
AACATTTGATTCATCAGGCGAAACAAAGAACAGATAAGACAAACGAAGAGGAACAGAATT
GGCAATATGCTTAAAGTTCAGATCCTTTCAATTTCTTCAACCATGGAAACCGGATAAGAT
CAAGCAGGATTACATCTGAGTTTAAACACTCGATAATTTCTTTGGCATATTCACAGCCAT
AGGATTGAAGCAACTAATCCGACCACCAACTAGAAATTCCTAATACCAAACCATCCGGAC
TCTTCTGAAAACCAAGACACTAAATCCTAGGAAACAAGAAACTCCTCCCTCTTTGTGATG
CAAATGTAATCCATGACTGGGGTGGCAGTGATGAAAAGGGCGGGCCTCAGTTGTCGTCGT
CATCGACGGTGGAGGCCTTGGAAGAAGAGGCCTTCTTTGGGAGGAGGTGCTGGTGGATGT
TGGGCATCACACCGCCACTGGCAATGGTGGCACCGCCAAGCAACTTGGTCAACTCCTCGT
CATTGCGCACAGCGAGCTGGATGTGGCGGGGCACGATACGGGTCTTCTTGTTGTCCCTGG
CGGCATTGCCGGCCAGCTCCAGAACCTGGATAGAAGGGGGAGAACGACAAGATTAAAACA
AGCAGCAACCAATGCAATGGATATACTATATGAAAGCGCATCTTCGCACCCAAGAAACCC
TATCCTAACGATTTGGGACAGGTAAATAACTCCAATATTGACGGATTGCTACTAACTGAC
GGTACGGTTCTAAACAGATCTAAGAATAGCCCAGATTTATCGGAACCGCGACGGAACCGG
ATCAAGTAATAGAATACCGAGAGACCGAGGGCAAGGATTGAGATCCGGGAGAAACGAACC
TCAGCGGCGAGGTACTCGAGGACGGCGGCGAGGTAGACAGGGGCGCCGGCTCCGACGCGC
TCGGCGTACTTGCCGGCCTTGAGGAACCTGGCGATCCTGCCAACTGGGAACTGCAGCCCG
GCCTTGGAACTCCTCGACGTCGCCTTCTTGACAGCGCCAGCGCCGATTGCCTTCCCACGG
CCGGCCATCTCAGCAACCGAGGAAGAGGGGAACGAAGGGAGGCGCTGCTACGGGAGACGG
AACGGGCGAGGGGACAAGAGGCTGTGGAGGCGAAAGAAACGCAGGTGGGAGGAGTCGTTC
AGCGCTGGGGAGAATATATAGGAGGGTAGGGACGGGGCGGCAGCGAATGGGCGGCGATCA
CGCGGATCGCTGTTTAGGGCCGTCGGATGCGCGAGATTGGACGGTGGATGTGAGCGACGG
GGCCGCGAGGGTTCGGATCCGGAAGCGGCGGGAGGACGTGGGCATATGGGGCGGGGAAGA
TTTTCGTTTTGGACCTTCCGCGGCAGTCCAGGCCTGTATGGGCATCGACGGAGTGGTCAC
GTGTTTTAAAAAAATTATATAGCCCACCTGTCAGTCTTATTTCTTCTCCAGTAAAGATAA
GATGTGTGCTTGCTCCACCGATAATGTAACTTTTTTCTTAAAAAAATGTAACTTTTTTTG
ATCAACAATAATGTAACTATGGAGTACAAGTTCCGCTTATACAAACATAATATGAAATTA
AAATTAATGGGGCATGACTAGAGTCAAGTGACTAAAGTGGCATCCCGTGTATCTTCCTTA
CTATTCTTTCTCCTCCATGCACACATCACGTCCACTCTTATATTTCCTCGCCTCTCACCG
ATGAAGCCTTTCTCACCCTTACGCGTCCTCTTTATAGCATTCTCGAGGACGTTTCCTTCC
ACGTCACCTTGACAATTGTATCAAGTGAAATTCATCGAGGGTGATTCCTTGAATCAAGGC
CGAATCGAGGAATTCGAAACCCTAGTGCGAAAAACAAAATGAGGCCCTAACATTTAAAAA
TATATATGATAACGCAAACATAATCTCTTAATTATGTAATTATAATTTATGCTATTTCAT
ACAATGTTTAGAAAATTCTCAAGTATCTATACAAAATACTAAAACCAATAAACTAACCTC
ATGTCTATTAAAAACTGTCATCCGTCTTGTGTTCCTCAAAATACAATTTTCAATTACATC
TTCATAATTAATATTCTCCAATATATCATTTTTCAAGTGCTATTGTGGTCAAACCATTCA
GTCTTTTTATGTCATAGTAGAACGCAAGGACGATAGGACCGATGAGCTCACATGAAATAT
ACGCTTGTGACTTGTATAGATAGTTCAAAATACTCAGAATCGTATATTACCTTGATTTTT
GACTTGGACGATAGAACAAGCAACTACCGAAAGTCTCGAATCAGTGACTACTTGTGAACT
TGAACGCTAGACAAAAATAGTTCCAAAACATATTAGTTAAATATCAACTCAACTTTGTAA
TTTGTAATTTGTGTCAAAATTAGAGAAAAGGAATGAGCGTGGAGACTATGGATAGGGAGG
GCACCACACGAGTTGGTCTTTCGTTCCTCACTTCCTTGGGCGGCACTGCGGCACAGCTCC
AATGTCGTCGTCGGCGTCCGGCACTCGAAAGTTAGGTGGAATTCGCCAAAACCATAAGTT
CTCCGCTTCCGCAAAGTGATTGCCGCCAGCGCCTAGCCGATCTAATTCGAAACGCAAGAA
GACGAGATGCGGGGTATAGAAGCGGAACTATGGAAGTTACGGTGCGCTTGGGCTATCGTT
TCGTCTAGGATACGAGCAATCTAGGCATCTACCGAATAGCGATCCACCTCGTCTAATTAG
GACTCAAGTGTTCCAGGCCCAAGAAGGCCGAGCAACGAACATGTTACAAATTTAGCATAA
AACTATTTTTTTTCCTCATACTGCATATATACATGTATGGACCTAGTTGGGGGCACGATT
TTTGGGGCCGTGTGCGAGCACAAAGCTCGC