Contig Data
morexGenes
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Map Locations of contig_49535 (8761 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_49535

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64938 2 2550 bp MLOC_64938.1 Available Available LOC_Os05g32820.1, FRAME:+1, EVALUE:0.0, 13105.m03383 protein peptide-N4-asparagine amidase A, putative, expressed





CDS Structure of MLOC_64938






Contig Sequence (8761 bp)

>contig_49535 8761 assembly3_WGSMorex_rbca.fasta
AAGGGTATGTGGATCCGATCACCCCTCTCGTAGATGATCATCNNNNNNNNNGGTTTTGCG
TGTGCGTAGGAATTTTTTNNNTTCCCGTGCAACGTTCCCCAACACATCTATCTTGCGACA
AAATCGGTGGAGGAAGGAAGGAAGGGACCTTATCGGTAGAGACGATCTGGGTCTCAAGGT
GTCATGATAGCTGGAGAGGGAGAACTTACCGGGCCAATCGTCGGGCAACACGCCATCCAT
TTTGGCGATGGCGATTAAACCCTAGCCGGACGCCTGTGCCGGCGACGGAGGAAGGAGGTG
GCATCGCGAGGATGGAGGGACGACGACACCTTGCTCCAGCCGGAGGAGGGGAGTACGCGG
CGTGTACAAGGAAGGGGATCATGCAACCGAGGGGTGGAGGAGACATGCATGCGAAGGAGA
AGGGAGGACGAGGGCGTGGGGCTCGACGCGGTGTTGACTGCATATGTATTTGTCAAGCAT
GAAACCTCGGGGAGATGTTGCTTGGGGTAGATCCTAGGAAAATTCGGACGTGTCATAGGC
GGGCGAGCGCCTTTTGCGTGACGCTTATTGTGTTTGATTTCAAGTTCAAAAAATAAATTA
GATAGTCTGAAATCTGTACTATACGATTTCGATTTTTTCTTGGATTATGATTTCTTTTTG
GTCTATTCAAACTTCACATGACATCCTCAAACCGTCTACTTTCTAATGGTATAATTTTTA
GACTATACAACTCATTTTATCTTGGTTAAATTATAAATTTAGCGCTACGTGCAAGCCTTA
TAATCTCGAAAGGAGGTAGTAAACTTAATATTTCACCACGACACATAAAGTCTTAAATAT
CACACGAACTTTGAAACTTATTTTACATCAGTCACAACGCACATGTTTTTCTGCTAGAAC
ACTTTTGGCAATATTGTGCATGTGCGTAACTAGGACCTAGAAGGGAATGATTATATCAGT
TCAATGTGTTCAGCAGGACGTAGATACGTAGATATCAGGACCCGAATTATGGAATATACA
AGATATAGAAGGACCCTTGTTTCACAACAACCGAAGAAATAAGGGTTGGTCGATTACTTA
AAGAAAGTGACTGCGTTGGCACGATGACGTGCTTCTACTGATGAAGGTAAAATATGAACA
AGAAATCACTAAACATTATAAACTCTCTATTGTCTAACTGGATATCTAGATTATTTTTGG
ATTGGTCAAGTATAAAATATGAATTCACATTAAGATGAGGAATATTTAACGGTTTAAGAG
ATATAGTTTAGTATTTCACCATGACAGATAAAGTCTTCAATATCACACGAACTTGAAATT
TATTTTACATCTGTCATAACGCACATGCTTTTTTGCTAGAACACTTCTCACAATAATATG
CATGTGCATAATTAGGACATAGAAGGGAATGATTATATCAGTTCAATGTGTTCACCAGGA
CGCGGATACATACCCCAATTATGGAATATACTTACAAGATATAGAAGGACCCCTATTTCA
CAACAACCGAAGAAATGAGGGCTGGTCGATTAGCTAGCATCTACCTTGAATGGTAATTGT
TTTATTTTCTTATAATTAATAAAAGGTGTCATTTGGATCTTCACGTGTCGGTAAAAATCT
TAATCTTGTAGACTTGTTAGTTGATCTTTGAGGATTGGTAAAACGTCATAACTAGGTACA
CTTACCGGATTGGTGCTACGTATTTTTATAACGGTCGAATTTGACTTTATTTACGTTCAT
CGCAAACTTGTACTGATTGGCTTTTAGGACGCGAAAACTAAAAGGAAACAAACACCATGA
TTAGACAATGCACAATTATTTCATGTGTTGAAAAAATGTTGAATTCTAAAACATGCTTTT
ATAATAAAAGATTAAAAAATTCAAAATTCTTTAATTATTTTAAAACAAAGAAATATTTGT
GTTTTCGGTAAAGTACAAAATAAAATCAATTACTAGACTATTTGATGAACGACTACTCTT
TCATTAGATGAAAAATGGTAGGATGGCTTCTTTACGTCAACGTGTCATATTCCGAAAAGC
AGCAACACTATAAGCTTATTACTGATGTTTATCGAAATGGGATATAAAAAATAACGTATA
CTCTCACACGGAGCAGATTTTATGATACTTTTAGCTCGTTTAACGCACGATCATTTATAC
TAGTACACATTTAAATTTTATGATCTACTCCTTTGGTTGAGACGTGTGTTGTGTGTTGCA
CGTACTCGTTCACTAGTCTCTACAACAAAGCTTTTCAATGTAATGACAGGTTGGCTTATG
AAGCCATTGACTTTCCTTTGTCAAGATCCTCCCGGTACATTGTTCGGGATCGTCTCACCT
TTTTTTTGTGTGTGTTTGAAGAATCACACTTGATCTAACTTTGAACCAAGAACAAATTCA
CGTCCATACCATTAATACGTGTCAGTTGATCGCCGTCAGTGATCGAATGCTCAATTTTAT
CCACTACTCTGCACGATCTCACGACTCGACTCAAGCACCACCAACCACCAATCTGAAGAT
CCAGAAAACACCACTCAAAATAACTAAATATAAGCCGGCCTTTCCCTCGGCACTCATCAG
CGAGACAGCGACCTTTCTTCCCTCGCCGCAGGCAGCACACGATGCCGCCGCTGGCTCTCC
TCCTCCTCCCGCTCCTCCACCTCCTCAGCCCGGCCCTCGCCGAGGCCCCCGACCGCTACG
CCGTCCGCTACGCGCCGCCAGGCGCCAACGGCAATGCGGCGGCCCAGGAGTACCTCGACC
CGACCTACCCGCTCCCGGGCCCGCCCCCCGGCGCGCCTGCCTGCACCGTGCCGGTGCTCT
CCTACTCCTTCGCCAACACCTACGGCGCGCCCCCCGCCAAGGCCGCCTACGCGCCCCCGC
CCGAGTGCCCCGCGCCCTGGTCCCAGGTCGTGCTCTCCTTCTCCGCCGCCTGCGCCGGCG
ACCAGTACGACCGCGTCGCCGCCGTCTGGCTCGACGGCTCCGAGCTCCTCCGCACCACCA
CCGCCGAGCCCACCCCCGAGGGCGTCAGCTGGACTGTGCGCAAGGAGGTCACCCGCTACT
CCGCCCTCCTCCGCTCCCCGCCCGCCGGCGTCCTATCGGTCATGCTCGAGAACCTCGTCA
ACGACCAGTACACCGGCGTCTACAACGTCACTGTCTCCCTCGAGTTTCATGGAATTCCGG
CTTACCTCTCCCAGGTAAATCCCCCCTCCTCCGATGCTGGTGTCGCACACCCCAGCCCCG
CGACACCGACGCTGCCGGACTCGTACTTCCAGCCGGCGGACCTGGTCCTGCCCATCTCGG
AGGCCACCGGCGACGGCGGCTACTGGTTCCGCATCCAGAACTCGTCCGACTCGCGCTCCA
AGCTCGTGACCATTCCGTCGAGCACCTACCGTGCGGTCCTCGAGGTGTTCGTGTCCCCTC
ACTCCAACGACGAGTTCTGGTACTCCAACCCGCCGGACCTCTACATCCAGGAGAACAATC
TCACGACGCCGAGGGGTAACGCGGCGTACCGAGAGGTCGTCGTCAGCGTGGACCACCACT
TCGCCGGCTCCTTCGTGCCGTTCCCCGTCATCTACACGGGCGGCATCAACCCGCTCTACT
GGCAGCCCGTGTCCGCGCTCGGCGCGTTCGACCTGCCCACCTACGACATCGAGCTCACCC
CGTTCCTCGGCCTCCTCGTCGACGGCAAGGCGCACGAGTTCGGGATCAGCGTGGTGGACG
GCATCGCCGAGTGGCTCGTGGACGCCAACCTTCACCTCTGGCTGGACCCCAGCGCGTCGG
CCGTGCAGGCGTCGCTCGGCCGGTACCGGACGCCGCGGCTGTCCATCTCCCGCCGGTACT
CGACGCAGCTCCTGAACGGCAGCTTCAGCATCCGTGCCAAGAGGAAGTCCTTCTTCAGCG
GCTGGGTCAAGTCGTCGCTCGGCAACTTGACGACCGAGGTGGAGACGGAGCTGGAGACAC
GCAGCCTGGTCGAGTTCACCAACGACGGCAGGAACAAGACCGTCCAGATGAAGGCGGAGC
AGGAGACGGAGGTGCTGGTCCGGTCGGAGGCGAGGAAGGTGATCGGCAAGCTCAAGACCG
AGTCCGAGTACCCTCTGTCGTTCTACATGGACACGGAGGACGGCGAGGACGGCACGTCCC
TCATCACGGGGAGCCTGTCCCACACCCTCAGCCTGGAGACGAAGGTGAAGTCCGACAGGT
TCGAGAACGAGGCGGAGCTCGTGGACGAGCAGACCGCGGAGGGCTGGATGGTCGTCAAGG
ACCACGACGTGATCAACGGGTCGGCGGCGACGAGCCAGATGTACCGTTACAGCGACGACC
GGTGGCGCTACCGCCGGATGATCGACGCGGTGGACGGGCTGGTGCTGGGCGACAACGTGA
GCGAGAGCTACCGCGTCCAGGGCGCGGCGAAGGCTTGCCTCCCCGGAAGGAGATGCGACG
GGACGGCGTCGGCGGCCGAGCGCTGGGTCGACATTGCTGCGATGTGAGCATGATGATGCA
GATTTTTTTGGGAATCCCAGATCCGTGGGAAATTTCGAGCAGGTTAGCAGAGTTTTTGAT
AGTTGGATTAATCCAGTGCACCACGTTTATCCCCAGTATATTCCTGTTGTTCTTGTATAC
TGTACCGTATACTGTAGTTTGTGTGAAGTGGATGATGTAGTACGCGTTCGTGGCCCCTCA
AAAAAAAAAGTACGCGTTCGTGTCAACGCTTAGCGGCCGCAGTTTAGGATCTCGATCTAT
TGCTGTGTGTAGCCATTTGAATGAGTACCTCATTGTGTTTTTTTCTAAATAAAACGTGGA
GTCAAGATTATAGTATTATGCTTATGAATAAAGCTGGAGATGGTGATATACAGTACGTAT
GTATTGTCAGCCGATCAGTTTTGGACTGCTTTGCGAATTGCGTGAGTCTTGGAGGCTGCT
CTTTCTTCACGTTTTCTATGCTACGAAGGCTTTGCTTAATGCAGGACTTATGTTCCTTTT
GACTAAATATCCAATGAACCCCCTTGGAGCCTCTACGGCCCAACATTATAAATATGATCT
CATAAATATCCGCGGACGTGTCCGGTTAACGGCCCGGCGTGTTTCGTATTTATCCGTTCA
TGCAGTTATAATTTTTATTTTATTTTTCATATGTCCGGTCACTTATAGTACGTGATTGAT
GAAGAAGAAAAGAGAGAAACAAAAAATGAATAAATAAAAATAAAATGTGGTTCTGAGTGG
GGTTGTGTTCTATGTGATGGATTGACCGGCGCGTCCAGACTCGTCTGTGAGCCCTTATAT
CCTCCTCATATTTGAGATGGATATAGGTGTCGTGAACAATCCGAACGTATAGGGATGATA
TAAAAGATACAGTTGGATCATTTTTTCCTTCTCTTTTGTCTGATCACTGATTAGTCGCGT
TCATGGACATACGAGGGATCATTTACGGATCCGGTTGTAGATGTTCTTACCCTCATCTAC
TTCATCTATTAAATATGATCGTCCATCTATTAAATTTCAGATTGTAGGTCCTAAAGCTTT
TGTTGATGTAATCTTTAGTCTTTCCATGGCAGGGAATATGGCAACAAGTAAATGATCCTA
TCGCTGACCATTCTATCTTTATCCACGGAATTTCTTCGGCCAAAAATTCTGTTTTGTGCG
CTGAAGCTTTAGGACTTCTTTTGGCGGCCTTAACAACTATAGAACTTGGATGAAGAGACA
TCAACTTCTTTACAAATTGCAAAACACTTAGCGGTTACAGCCGAGGCCAAGAACATTCTT
TCTGATCCTGGGCACTGGAGCACCGTACCCAGTCTAGCAGGTTTCTTTCTTTCTTCTTCA
GCCCTGTTGAGCTCTAAAGTTATCTACATCCCTATAACTCTTAATCTAATTGGCCATTTT
CTTGCTGAAAGAGCATAAAAAAACAGATCAACTACTAGTTTTCTTTATCTCTACAACAAA
GGATCAAGATGTAACTCTGGAATGGCTTTTGAAGCCAACAACCTCTCTAAGGGGAAGCTG
TTATCTGTAAACTGTTTGGGATGTTAAGAAAATGTGCTAGCCCTCCTGGAGGGCTCTAGT
TTGACAAAAAGAAGTTTTTCTTTGGAAAAGGAGGAATTTTTTCGACCTCTGAATCAATAC
GATGCATGCATCCATAACAAAAAAAGCTAAATGCGGCAAACACCATTGATTAACTCGTGT
TCCGCTGCTTCGTGGACCGGCAAATACTTTTAACTCGTGATCTAGCATGAAACCGGCCAA
AAAAACATGAAAACGAGTATAGGACTGGAATGAAAGGGTCGTGCCGCAAGGGGATGTGCT
ACTCACTTTTCACCCTCACGTCAATGCTTTGCTCTTGACTTGGATCTATCGACGACGGAT
GCAAGACCTCGATGTGGGCATGTACCTACCGTAGTTCCCCCATTCTCTGGCTTGCAGGGA
GGCCGATGTCACACGTCCATTGTCCGTCATCGCCAACTCTGTCTCATGCATCGGCAATGC
ACATCTCGCTCATCCGATCTTAACATATTCGATGGCTTGCCCAAATATTGTTATGCCCAA
GCTAGTTCAAGGTTCCATTACAGCCAACATCCAGAGGAAGTAGCTAGGATTCAGATTACA
GAGGAAGACACAAGGGGATCGGGGGACGAAGAAAGGGGATGGTAAGGGGTGTCGCCGCCG
CCACTGCCTACTCTCTGCCTGCCTTCTCCTCCCAGACGCACTAGCTTAAGAATCCTAGGT
CATCCATGAGTGGGCCGGGTACCGGCTGCTGGGCCTGCTTGCTCGCTTGGTGGGCTCTTG
GGCCTCTCCATCCAGTGGGCCTGTCCTACCACTCGTGGGGGTCGTAACAAATATTTACCT
ACGTTTGTTCAGATTTACTATCCTAGCTCCTTAGAATCATCTATTTCACATAGGATTTAT
AATTTGTGTTGATGTTGTGGATGGTAGAAGTGCTTTTCAATGATTAATCATTGCACGTCG
GATGACTTTGATAATGATATCTTGGATGATGAACAGTAGGAGATTTTATTGATGGTTGCT
CTATGAACAATGAGAACCGAGACGAAGAGGAAGTGTGTACGATCGCAACCTGGTTGTTCG
ACCTATTGTTGAAATATAGTAAACTCCCATAATATTCTTAGTTAGGACAATTTTATGTTA
AATCCCACATACCATGCTCATCTATTCTACTGACACTTCATCTTGGCATAACAACTATTT
CATTGCATTGCTAATAATGCGGTTCGTTCTTTAATGCAACAGATGAATATTGCCGGTCTA
CTAGATTTTTATTATTTTCATAAGGTAACCGCCGCACTTTGGATGATCACATATGACATT
CCTGCAAATATAACATACCAAAATATTGGAATGGCAGAAGATACGATCTTAACACGCATG
AAAGTGTTTACCGATGTTGTGATAGGGGTTATGGAGCTTAGTAGCACGCACCCGACATTG
ACCATACAACGAGGCTTTTTGTGCAAGAGGTTGTCCTTGGATGCTTAAGAGTGTTGATTG
TATGCATTAGTGGTGGAATGATAATTTCTCTCCGGCATGGAACATCCAATTTACTATACA
TTGCCATGATTCAACTATATTTTGGAAGCAGGCAGTTTAAATGTTTTGTGCATTTGTCAT
TGTTACCTTGCCTTGTCTAGCACTCATAATTACATCGATGTCTTGCAGATATCTCATCTT
TTTATTAGGCTAGTAGGTGGTGATGCTATGTCCATGAGTATGGCCAAGGTTTCTATCTAG
CCAATGACATCTATCCATTCGGGTCAACAATTTCGTGAAGACAAATTCTAATCCTCAAGT
TTTTTTTTGCAAAGTAACGATAAGCAGGATGGAAGGACATTGAGAGTTGCAAGCTCGATT
TACAATTATTTGGGATCCTACCCATTTTTGGGACAATGACGCCTTCACAAATATCATGAT
CTATTGTGTGGTCCCACACAACATGACCGTTGAGAAATGAGAGGGATCTGGCGATGCATT
ACAAGTATGCCTATGTTTTAAAAAAGACAAGCATGACTCTGTTGACTGAACCAGATGTCT
TGTACTCCCTCCTTTCCGGTTTACAGGTCTCAAATTAAAAATCTCATCAACCAAGGTAGA
TGATGAGTGATGGAATAGTTTTTATTGTTAGCAAAAATACTCAATCAATGCACTCATTTT
TCACAAAATATGTGTTTATCAATGTATTAATTGCAATGCATGTATGCATGGCCAATAAAT
GACAAGAAGATTTTACATGCATTGGTGAGTTTTATTTTAATTCTTATATACAGATATTTA
ATGCACCTCGAAACGTAATAAGTGATGGGAAGTAATAAATGAGACTTATAAAATGGAAAA
ACGGAATTACAAGATGAACCCTATTAACCGAAAGAGATGTAGTAGGAACGTATGCCACAT
GTATGCATTTATTGAGGCATACTAGAAGGTTGGAGACCGGACCTCCAACGATCAGGTGTG
AAAGGACGGGGATTTCGCCTATAAGGCGGGGGGAGGGGGTGAATAGGCGTTTTAAAATAA
TTATGTTTTAGGCTTGAACAAATGTGGAATAAAAATAGCATTTAATTAGACAAACACAAA
ACCTAAAACAACTAGGCTAACCTATTCGCACCAACAACTTATGATAAGCAAAATAAACAA
CTAAGTGATAGCAAGATATATAACAAGAAACACTATGGCTATCACAAAGTAAGTGCATAA
GTAAAGGGCTCGGGTAAGAGATAACCTAGGCACATGGAAAACGATGATGTATCCCGAAGT
T