morexGenes - Barley RNA-seq Database

Contig contig_49530
Source Contig contig_49530
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49530 (7095 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_49530

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64937	2	1544 bp	MLOC_64937.1	Available	Available	LOC_Os07g48460.1, FRAME:-2, EVALUE:1e-163, 13107.m05189 protein stress responsive protein, putative, expressed
CDS Structure of MLOC_64937

Contig Sequence (7095 bp)

>contig_49530 7095 assembly3_WGSMorex_rbca.fasta
CGCCGCCCCGCCCACGGCCCTCCCGCCACTGCTCACGGACCCACCGACCTGCACGCGGCC
CCGCGGCCCTCCGCCGCCGGCCTGCCTGCCGCCCTCCGCCGCCAGGGTTGCTCCGCAACT
GAGCCTGCAAATTTATGCAACGAGGTCGTTGTTTCTGCAACTCAGCCATTGTTTCAGGAG
TTGCATAAATTATTTTCTGCAACGCAATCGTTGTTTCAGGAATTTTTTTTGCAACATGAC
TGTTGTTTTTGCAATGCTGCTATTGTTTCTGCAACTCGACCTCTATTTTAAAAACTGTTG
GATGCGGGGACGTAGATCGGACGGATGTACCGATACATGCAACGGCCGTTGAGGTGGATG
CGAAACAGCCCTCAAAAAGGGACTTTCGGAGGATTTCGTACCGGCGGTCGCGTAGGGGCG
AGGTTCCCAGGCCTCTATAGAACAACATATCATGGCTATTTTGTGGGCGATTAATTTTTT
GCCCTTGACATCAAAAATGAAAGTAGATTAATTATTACTCGTTGGAAACCCAAGATACGG
ATTATAATCAACCCAAACACGAAAATAGATCTACCTAGATGGTGATCCACCACATAACGA
ACAACACACTAGATTACACAGGGCTGTCTCAGCAACCATGGAAATCCAGATTTACTCACA
CCGGCCAAGGAAGGATCTTCCAGCTTTACTCACTCCAAGGAAGGATCTTCCAGCGTTGGT
TCTCGCCCTCGCACCATTCCCACAGGACGATGGCGGTGCCGTCGTGCACGCCGCCCTGGC
CCTCGCCGGCGTCGAGGGCGTCAAAGTTGAGGTGGATGTTGTTCACCATGCGGACGCAGC
GGAAGCCGTCGCCGACGTCCTGGCTCTCCGTCCACAGCACCGACTCGTCCAGGTAGTCCG
GGTCGTAGCGCACAAGCCGAACCTGCGCGCAGTAGTCCAGGCCGTCTGTTAGATTATGTA
CTCAACTTGTTGCATGGTGTACTAGCTAGCAAGTCAGCTTACAGGGTGGGTCTCTCCAAG
GGAATGCTTGATGGCTTCGCCGGTGAGCTTGTTCACCAGGGCGAACGCAGGGTATCCATC
CTCGTCCTTGATCCTGGTGCTGCGCCGCATGTCCTTCACCCAGTGCTACATATGCATACA
TTTCGTTGGATATTGTTTAGCCGGGTGATGAGAATTTAAGATCAATCATCATGCATGGTG
ATGATGTTTTGACTATCTGTTGTCACCTGCAAGTCGTCGCTGGGGTCAGTAGGCACGAGG
CACACGGCGCCGTCCCTGGCAGCGACGCTGTACTCCTCGCCGGCGCTGCAGAAGATGCGC
ACCGTGGATTCAGAAGACAGCGCAGGAGGCAGGCCACCGTCGTCGTACCCTTGGCGTCTG
TCCTGTGGCGCCGCATCATCATCCCCGCCGTACTCGTCGTCTTTGTATGATTCCGATTCG
GCGTTGGCGTCGGTGTCCCACGGCAGGATCTTCCAGCATTGGTTCCCCCCCTCGTTCCAC
TCCCACAGCCCGACGACGGTGCCGTCCTGAAGCTCCGGGTCGCCCTCGAAGGCGTCGAAG
TTGAGGTAGATGTTGGTGACCATGCGGATGCAGCGGAAGCCGTCGCCGACGTCCTTGCTC
TGCGTCCACAGCACCGACAGGTCCATCACCGCTGGGTCGTACTCGTACGGCACCAGATCT
ACCTGCAAAGATTCATGTGAATGTGAGGACAACAGTTAGAAAGATTCAACAAAAATTCAA
TCAAGAGCAGCACATAATTATTGGTTTGATTGGTACTCACGGGATGAGACTGGCCGAGGG
AGTGCTTGATGGCGAGCCCGGTGGCCTTGTTGACGAGCGCGAAGGCCGGGTAACCCTCCT
CGTCCTTCACCCTCGTGCTGCGCCTCATGTCCTTGTACCAGTGCTGCAACCGCCCATATC
GATCAAGCACATGCGCGTCAGATCCATGTAATGAAAAGCTAAAAACATTCATCGAGCTTC
ACAATTGAATGGAAGTTAACTAAATAGCGAACAGGAGAGGTTTCCTTGCCTGGTACTCGT
CGTCCGGGTCTGCTGCCGCCATGACAACGGAGGCATCTCCGTCGTCTCCGCCGCGGACGG
TGACGCAGTACCCCTCGTCGGCGCGGCACAGGATCTTGAACGTTTTTTGCTCCGGACGAA
ACATGCTTCTCCAGCAACGACGACTTGGGATTTGGAAGCTATTGGGAGGGGTTGTCACCG
AGTGAGAAGGAGGTGCATACCACGTACAGCCTCAGGTTTTATTGAACCAACCTGAGGAGG
GATATGTTTTATTCCATGCTAGGTTGTATGCCTTAGTAACATGGATGTAACATGTGGCGC
ACGCGACCTCGCATGTGAACCAATCAAAGTATTAACATGGCAAACATCCATCATTATGCA
TCTCACATGCGGCCGGCGCATGTGGGAACCAGGTAATTAGCCAACTAAGCACGCTCAAGA
TCTCGGATGATCAATCAAATAAATTTATCGACCCAAGAAATTTGTCTCTTCTTGTATGGA
ATGGCCAAAGCCTTAGCCACTAAGGCAACCAAACTTAATACAATTAGATACTATGTAACA
ATGTTTACAGCAAGATTTGTCTTTTCTTCAAGATGTCACAGTCCCCTCTTTATTCTCCGT
AAAAAATGGTACCTCTCTCGCTTACGTCTTGTTGTAATCCGATGATATCCTATGTGTTAC
TACGTCTGTTTCCAAACAGATGGTGTATAAAGTATAAACTGAATCAGAAGTCAATGTTAT
CTAAGTTTAACCAAGTCAATGTTTGGTGGGTTGGGTGTTCCCAACCTTAAAGATTTTAAT
ATGGCTTTGTTGGCTTCATGGAGTAAAATATTTTTTGATGATAGGAATAGTGATTGAAAA
CAGCTCCTGTCCTTCAAGTATACCACTCATAAACCCAATACAGTGTGGGCTAGAGCTGGA
GTTTGTTTTTGAGGCAAACTATCGAAACATTATTAACCCGTCACAATGTTTACAGGTACG
AAAGAAAGTTCTTCCGGTTGGCCTAACCAGACATGACAGCCATCACCGAGAGAGAGTGCA
TATTTCATTAGATTGTGAGCTTCCTTATTGGAGCTCCTAAACTCATGAACGAAATTACAA
AATTGAAAAGTCTAAGAATGATCTATAATTTCATGTAACACTGCTCCGTAACAAGCAGAG
CTTCCCTTCCGAAGCTCGTCAACCACCAACTTGCCTGAAGCAACGTGAATGTGCCGTACA
TATAGGTCGTCCGAGAGTGCCAAGGCTTCTATGATCAACATTGATTCCAACGTTGGAAGG
TCTATGATATACCTGAAAGACCGAGCCGACGCACCTAGGAAGTTGCCTTTGCGATCCCGG
CACACAACACGAATAGATCCAAACCTGCCCCTAGTCGACACCGCCAGCATCAAAATTGAG
TTTAGCGCACCCCGTCCTCCGGCGGCAACCATTGAGAGGGTTTAGGTGCAAAATGGGCCA
CCGGAGCCGGAGGCTTGTTGTGAGACTGACCTCCAGTTCTCACAGAAAAGAAGTTTTGAA
TCCATGTGTCGCATGTGAAGACTAATTTTTTTCCTCATTTATTGCCTCTCGTCTAGCGCC
CTAAATTGCCCATGCAGTAACCACAAAGCACACAAAGGCATCAGCCTTAAGAATTTTGTG
CAGAGCAAAGAGCCACTCCTTCGGGTCATCTTGCTGGTTTTCACTAATTTTCTCGACTAG
TTCCTCGGGCGCTAGGGCCCATATACTCCTCGACATGGTGCAGGTGAGAAGGGCATGTCT
CCAACTATCTCTCGCTAAACCCAATATAGTGTGGGCTAGACCAGGCAATGGTTCTGCATC
CTCGAAAAGTATCACTTGGGCGTTGGTTGCTGACAAAGTCTTTTGGGTTTTCTATTTCTA
TGCCACTGGTTCACTACTAGGAAAAAGCCTATAGGTCTTAATAGTAGCGTGATCCACACA
AGCTCGCTACTGCTACTTAGCAGTACCGCGGGAAAATAAAACTCGTTACTGGTAAGCAAA
TAGCAGTAGCGCAGTCAAAAAATGAGTGCTGCTGGTAAGCTTTCCGAAACTTACCCACCC
GCCTATTTATAGTAGCAGCAGTGGTTAGAGAACCGCGCTACTGCTAAACGGGTCAGCAGT
AACACGTTTTTTCATATGTGTTGGGCACAGTGTGCCATTTGATGGGCTCCATTTAGCAGC
AACACGTTTACTTCTGCCGCACTATTGCTACTGCTCGTAGCAGTAGCGCATTTCTATTGC
CCGCGCTACTGCAAATGCGCAACAGCCAATTTTTCCTACCTACCCCCTCCGTGTTCCCCT
TCCTTTCTTCCTCTTTCTCACTTGCTTCCTTCTCCCCCATTACTCCTCTGTTCCTTCTCA
TTCCTCTTTTCTCTCTACTTTAGTGCCCCTCCATCATCTTCATTAATGCATCCCCTTTTC
TCTCTTAGCTTCCTCCTCACATTTTCTCCTCCCTCTACTAGCTAGTTAGAGCTAGCTATG
CATGCAGCTCCTTCCCCTACTAGCCAGTTAGATCTATCTATGGAGTAAGTGAAACCTTTG
AACTTCCCCTACTAGCTAGATCTATCAATTGACTTCGTGGAACATTTCAAGTCTCCGCCA
AAAATTATGCTTAGGACAACTTTATGTGTGTGATATGATGAAAATTGAGCGTTTGGCATG
AATTGCTGCCTATATGTTTATTTGTCGAATTGTGTGTGTCATGAGAGTTGCTTATGATTT
GCCGAAATGTCTATTATTTCTGTTTCAGCAAATTTCGTGCAATCTCTATATGTCCTTTTT
TGGGAAGGTCATGCCGATTTTTTTTATGACTTTGATGATGCATGGATCTGTTTATAATCC
TTTTGCTTATTAATTATACTGCACATGCGATCATGAAGGTCAGTGAAACGATGGTGGAAA
GATGGTTTCGATCGGCCGTGCATGACATGTATGAAAATAACCGGATGTCCGTGTCGAAGA
TGCAAAGGAGGAGTCTTGCAGGACCCCTTTACGGGAGGCTATTTGAAAGCGCCCCTGCTC
ACGACTGGTTTAATGGATGGCTATACTCAGTGGATAAGTGAAGATGATGATGTCGTTGAT
GCGGCGACCAATGACGAAGAGATGAACGATAATGGCGATGGAGAAAAGGCCAGACATGGC
GACAAAGAAGAGGCCGGACATGGCGGCGGAGAAGAGGTCGGCCATGGCGGCGGAGAGAGG
CCATACATGAGGGAGCAGCCGCGGACATGTTGCATCATTCTTCAGTACTAAGTTCAATCC
CGCAGGACCATCATGTTCGAGACGTGCTTCGCAAGAAGACGAATAGCTACAGTAATACTT
GTGATTTGCGTTGGGTTTTTCATCAAAAGGGACGGGTAATTGCAGCACAATACTGATAAG
TACTCCCTTCAGTTAAGAAACCAAAGTTTATCAAACCAATAAGAATATGAATCCTCAACT
ATCTTCAGCGGCTGCACACAAAAGAGCAAATAACTTGCATCCAACGCAGGCAAGAGGGTT
GTCAATCCCCTTGATCTTGTTATTTGCAAGTAAATGAGATGTATAGATAATTGCAGAGAA
TTGTTAATTGCAAAATAAAATAAAAGACAAATATGAATAATGAGGAAATTATAAGTTTTC
TGAATGTATAAGTGAGTAGACCCGGGGGCCAGAGTGTTTTGTCTAGTGGCATCTCTCATG
ACAGTAACATATGATGGGTAAATAAATTACTATTGGGCAATTGACAAAACATCAGATAGC
TATGTAATTTTCACGACAATGATCATGTGTATATAGGCATCATATCCATAAGAAAAGAGG
CCGACTGCTGCCTGCATCTACTACTATTACTCCACTTCAAGAGCGCTAATATTCTTGCCT
ATCTACGTATTAAGTTGATGACAATCAGAGTAATGCTTGCAGAATAATGACATGATGTAG
ATAAAGTAAACTCAACCAATATAAATAAACCCTATCATTTCATCCTTAGTGGCAGCAACA
CAAAGTTTTTTCCCTTATAATAAAACATTATACATGTTTAGAAGCAATTTTTATTGCTTG
ATGCAACGATGACAACTTACGTCAAGGATGTTACTCAATTCATCAGTAGGTATGATGGAC
TCTTATGGCAAGAAACTGGGTTTTAGGATTATGGATGCACAAGTAGTATCTCTACTTAGT
GCGAAATTCCTTTGGGCTAGAAAAAAAATCTAAAGCAAGCACCGCATGTTAAAGGATCTA
AAACCATATAACTTCTATGTGAATATAAACCACAATAATCATTATGTTGTCTCCTGTCTC
CTACATCAACACTTGATCCTTATATTTTTAATATTTAGTGAGGGCTAACAATCATAAAAA
ATGTCCAAAATAATACTCCCTCCGTCCCAAAATTCTTGTCTTATTGTTTAGAAATTGATG
CATCAAAATACTAAAACGTGACTAGATACATTCATATCTAGACAAACCTAAGACATGAAT
TATAGGACGGAGGGAGTATATTTATATGAGAATCTCCTATCCTCTATCATAATCGTGCAT
AAATAGTAACAATGACTAATGTTATGTTTGTTTTCTATCAACAACTATTATCACTTATAC
CCTTTTTCATGTCAAGTCATTACTTCTCATCAGGTAAACATATGATCTTTCCATTTCTTT
TTATTGCCATGTTTGTTTACTAAGATCGGTTTGCGTCGCCGGCCGCCGCCTTCGACCCCG
TGCCTCTACTTCGACACCGACACGACCACATAGCCTCTACTCCGACCCGGCGGCCTCGCG
CGACGCGACGGCCCGTCATGGCCGTCGCACGCGCATCTACCCGCCAGTGGATCTACGTTG
CCCGTCGTCACCCCACACTGAACAGAACGCCTGCATCACCCACCTACCGTCTTCATCAGC
GGTCGTTGGCTGCCTCGGGATCGCCGATTGCGTCGGGCTTACTAGCTGATGGTTGCGTCG
GGCCAGCTCCAAGCTCCGGTTGCATCGGCCTCATGTCGCCTCGGGCCGGCTGCCGACTCC
GGCCGCGTCGGCCTCACCTGCTGCCTCGGGCCGGATATTGGCTGTCGGTTACGCCAGCCT
CGCCAGCTGCGTCGG