Map Locations of contig_49490 (9894 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_49490

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64908 3 1567 bp AK364785 Available Available None





CDS Structure of MLOC_64908






Contig Sequence (9894 bp)

>contig_49490 9894 assembly3_WGSMorex_rbca.fasta
CGTTCCGAAATATAAGTCTTTTAAGACATTTCACTAGGTGTCTACATACACAGCAAAATG
AGTGAATCTATACTCTNNNNNNNNNNNNNNNNNATCCGTATGTAGTTCATTAGTGAAACC
TCTAGAAAGACTTATATTTAGGAACGGAGTTGAGTAGATTTGAGTACACACAGCAACAGG
TGGGGCTACCTCTAATCCAAAATGCATGATGCCTAGAAAGTGTGTGCAATCAAACTTCTC
TATCTTTGACAGCTAACTGATGACAAAAACTAGTACTCACGGTTAACTGATGACAAAAAC
TAGTACTTGGGCTTGTTTGGTACAGTAGAAACTATACCATCAGATTTGGCATAGAAAATA
ATTTATTCACAGTTAACTTTTTTTGTTATAATTTTACTTGCATATCCATATACAGATTAA
CAGTACGTCTGGAAATCAGATTGGTGCACTCACAACTCTTGAAAAGACAAGTTCTCTCTG
TTTGGGTTGGTTACAGTTCGCCATCCTTATCATGTATTGCTGGAGTCAGCAAAAAAATAA
CATAGGTTTTTCCAACTTATCAAGAGCACAAATGTATAACTATAACGCTTGTTTACCAAA
TACTGCTCCATTGTTGAACTCTATTGTAAAATAATCAGTCGCCCATCCATGTACTATTTG
GCGCATCCATGTACTATTTGTGAACGGCATTAATCAGATGACAGATGCAGGGCAGATATG
AACCTAGATGGCCTCAATAGCCATGACAGAATGATACTCGATTGACTAAATCATTATCAG
TAATGTGAATATCTGTACGTACCTATAGATATAGATGAATGCCTCAGGTACCATTCCGGC
AACTGAACCACATAGGTAAGGATTGAACTTGATTTCTGTCACGGTTACGGCATAGTTAAA
AATTGTATACGGAAATGGTGAGACTCTGAATAGTGCAACAACTCGAAACTGCTGAAACCA
GTTCCCTTCACCAGCAAGCTGTATTAGAGCTATCTGCTGAGGCCATCTTTTTAACCATGC
CTGCATTAAAAGGGGAACAAAACAGATAAGAAGAAGAACATTAATGCATAGTTCCTTAGT
GAAAAGATGCAAGTCTGAGAAATTTTACATGTAGACGTTCGCGGAACAATGAGCCGATCC
AATATGATGCAACCATGCCAAGAGTAGTCCCAACCATAATAATCAAGAAACCCCAGCCAT
AACCGAAGATCATTCCTGCTAACCACATAGAAGGTCCAGAAGGGACTAAGATGAGTGGGA
GGAGAGCCAAAGATGCGACGAGGACAAGAGCCAATACTGGACGGCCAAAGGCACTTGCTT
CCCATTGCATGATTGGCAACAGAACCTGCAACAAACAGAAGAACATACATAAATATTACC
GTAGATGTTCTGTTTCAACAACTCAACTCAAAATAACTCTCATGAAAAAAGGAATAAGAT
CAAAAAGTACACATGCACAACATAGCTCAGAAACATGACATAATTGATATTTTCATAAAT
ACAAATAAAATTTCCCTCAAAGTTCAGTACGCCACATATGCACTCACTAAGCAAATAGCG
TTCTACTTGAACCCTAATATAAAAGTCAATGTACTAGTCTAAAAGTAATTCCAACCATTA
CAAGCTGAACCCTGAAGCATATGCTTGAGACCTAAGCATATATGTGACAAAAGGAAACAT
ATTCTAACAGACATGTTCAACAAAGAACAAAAGTATTAAGTTGAATGCATCACTGGTGCT
GGTTCAAGTACAGTAAAGGACAACCAAAAAAAAATGAGCAGTGTGATAATAGCGTCAAGC
TTGGTGATTGTCCCATGGAAATTATATATGCATGCCATCTCAAAGTTCCTGATTATAGTA
AGAAAAGAAAATGGACCAAGACTGACCAAGCAAAAGATCACAGCCCAAAATGGTAACTAC
AACTGAAGAGCCAGCCAACAAGTCAACATCAGTTGGTTCTGAAAGGCATTTGGTGAGATT
CAGTGAAAGGTAACTAGAACAATAGACCATGCCTAAAATTACCCTCCAAGGAAGAGATTT
ACTTTTGCACAGAAAGTATCAGCGCCTCACCTTCTCAAAGGCAAAGGGGACTCCAAATTT
CACGAAGATATAAGATGCTAATATAAGAAGGAAGCAGCCAAGCAGAACTTTCATCCACCA
AATGAAGTGTCTTGACTTTGGTTGCTCAGGCAAAATCTCTGTGTTGTTGTCAGCTGTTGC
ATGTTGAGCTGGTATCACCAGCCTCGCACATTCGTCGTCCTTTATGTTTTGCTCGGAAGG
CTCAATTCCCTTGCGTGATGCCACAGCTGAAGAGCTTGGCATGCTTACGACCGTCTCACC
AGCTCTGTTTTTACAAGCCAAGAAATATTAGGAATTAAATGTACTGATACTGCACACGAA
CAAATCTTACTAATTTGTGTCATACATGAAGGGTTAAGGTTGACATGTGTGTCCAAATTA
AAGTTGCACAGTCCCAACTCCCTGTTATTTCTTTAAAACAATATTCCGTTACAGCTTAGT
TGCACACATAACTGAACTCGCACTCAAATGCACTGGTTTGGCCGGCATGTTGTAGACTTG
TAGTGTAGCAAATGGTCGCTCAATCATGATACTTAAAGTAGCATGGATGTAACATGCTAG
TGTAAGTAAGATTCCCAAATTGGACACATCATTAGTTTCTTCCCAACGCAAAAAATTTGA
GTAATGTGACTCATTTCATAGTTAAATGAATCCTAGGCGACACCTGTTATCTCTAAAACC
ATGACGCTTGGCCACAGGGAACCCGAAGCAGCAATCCAAAACGGAAAAATAAGATTATAT
AATCTGAAGCCAATATCAGGATATAACACACTCATAAGTTGCCTGAATTATGGTCGAATC
TCAGTCACGTTTGTAAACCCTCGGATGAACATCCAGCCATTTTCATCCCAAAACCCAACC
TCACCCAACATATCAAACTAAAAAATCATGTCTGCTAAAGTCGCAAACTTACAATAGTAC
AAATTTTCTGTCCATATATGAGATGTACAATTTTGAAGGGAACCGAGATTTACGGAAACT
TTCGACAGACAGCCGAGAATGAGGAAACGGACAACATAAACCAAGCATGAAATCGTTAAG
TACTAGGAACCCGAAAAGGATCGCCTCCTCTTTGCTGTCATTCCTCCTAAATTCCGAGTG
CATGGGTCATACCGAAATATAGCTGGCGCACGGGATTAGGCTAGTAACAGGTAATCCCAT
GCCCCCCCAGCTCTAATCAATGGTGGGTAGGCGGCAGCGTGAAACGGATCCCCATCCCGG
AGCCACCGCCCAGACAGGGGTGGATGGCCAGCTCCAGGGCAGGAGCAGAGCGAAGGCAGC
AGGTGGGTGGGGGCAGCGTGCCAGACAAGAGAGAACCTCGGAACCACACAAAAATCTTAG
CAGTACTAATTCTCATTTTATATACTACTCTACTAACTATATCATTGTTCTTCCAACAAA
CTAGGAGCAGTAACAAAGGTGGATGGGAATGATAATAACCAAAGAATAATGCTACTAGGA
AAGTAAGCCGCGATTTGGCGTGCCTAGACCTATATTTCAGCTAGGAACAAGAGAATAACA
GGCTGATAACAAAACCTCCTAATGCGATTTGGCCGCGACCTAACCACCACCTAAGCCCTG
ACGCCCAGAGAAGACGAGCCATCCGCCGGAATCGCTCGCCCCCCCCACCCCCCAGGAAAA
AAAAAAGGTGAAAACCCGAGCAGGGAAAACCAAGAAAAGCAGCAGGAACCGCGGCGGCGG
CCGGAGAGGTGCGCGCTGGTACCTGGCCGCCTCCCCGGGCTCAATGTCGAGAGGGAGGAC
GCGCGGCATGCCGTCGAGGGCGGGGATCGGTCCACAGCCTTGCTTCCTCCTCCTCCCCTT
TCCCTCGCTTCTGGAAGCTCGCGGTGGAGGGGAACGACGAAAGCAGAGTAGAGAGGGGGA
GGGGAAAAGAGAGAGCGCGTACTCGAAACAAAAAGCGAAAAGCGAAAAAAGGATGGGCGG
GGCGGGGGAAAGTACCGGAGTGCCCCGCACTAGCGGCGTGGTGGTTAGCCCACGTGGACG
GACGGACGAAACTGCCCCTGCCCTCGCCCCGCCTCGGGGAAGCGGAATGAATATTCGCCG
GGGTGCGACTCGTGTCACCGATGCGGCGGGTCCACCGTTCCGGGGAGCGGAGGTCTTCGT
TCCTTCGGGTTCGGGCCGGGCCGGGCCGGGCCCGTCCGACCGAGCGGCTCAAGGTCGATT
CGATTCCCCGTTGCTTTGTGTTGTTGGTCGCCACTTTGCTTCAAACCAAAGCTACGCCTC
TAAGATCATCTCACCCTCCCTCAAAAAAACAAAAACAAAATCATCTCACCCAAACAAACA
AACAAACAAAAACTAGGCCTCTAGATACCCACCCTGCTTGTGTGGTCAAACCGCCATCCA
CTGTCGCCGTGAGTCGTGACACGCCGATGAATGAATCTCTAGGAATAACTAGCTGGAACT
TTCTTTTGCCTCTAGAAAAACTCTTTTCTTCTACGTTTCCAGCGCTGCTTATCGCATTTC
AAGAGGATAAGGCCGAGGGTTGACAATTGCGACTGGCTTTCTTGTGTTGAAAGGCATCGC
AATCTTCTGGATTGCTCGGTCAATAGTTTGCAGGTTGCAGCAACACGGCAGATTATCATT
TTTTTTTTCTTTTGCGCACTTGTTTGGAAATTCCTAGAGATACCGAGTTTCGTATCGCGC
ATGCTCATACGACTTTTGTTTAAGAATTATACTCACTCCGTCCTTAAAAAGAGTGTGCTT
TTAACTTTGTTGGAGGGTCAAACCATCTCAAAGTTTGACGAGTTTGTGCAAAAATATTAT
AATGTTTGTGAAAATCAAATACGTATATGATGAAAATATATTTTATCATGTTTCTAATCT
ACTAATTTGATGGAGAGCGCCAAGAGCTCTGAGTTTTGTCTATGTTCTCGGTCATCTGAC
GTGGGGTGATGTCACCTTTTTTTTCTCCAGCCCGTTTCTCCCTTGTCCCAGCTCGCCGCC
TTTTTCTTTTCTGTCTAGGCTTTGGTCTGTTTTTTTTTCTTTCATATCTTCCTCCCGCTG
TCACGTGACCCGAGGAAAAAAGCACCTGGGTCCAGAGACATTTGTCCCTCTCCTCAACAC
TCTCCCTCCTGCCCATCCCTAGCCCCATGGTCGGCTAACCTTCAAAGGTGTTAGGGCAAA
TAAATCCCGAGATCTATGACCTAATTTAACTTAAAAAAACTTGGGAAAGAATCAGTGTGC
AGGCAAAACAAAATAAAAAACGTGTAGCAGCATGGATCCAGATGTGGGAGCTCAGCAAAA
CACACAAAGAACTCACCAAGGTAACCTGCTTTGATTTCTTTATCTTGTTTCTATATCTTG
CCTGCTTTGATTCCTTTTGACAATTGTTTGCTTGGGCAAAAAGAGGCAAAATGATACCAG
CAACATTGTCTGATTAGATTTTGTCTCTCGAGAAAATTTATGATCCAAAAGGTGACAACC
TGGATAAAAAGGAAAAGAAAAACTATTTGACCAAATTTTGTCTCCCGCAATGCAACTATA
ATTAGTGCTTATGGAGGCTACCTGCTTGACAATCAGGTTAGATATGAGACAAAGATATAG
ATAGAAACCAATTTCATTTTCATTAAAAGGTGGTGCATTTTCGTTGTCTCAAGAAAACAA
ATTGCTGGAAAAAAAAAGTAGTTTGTTATGCAGCAAGGAACACTTACTTTAAACTGAAAA
GAAAATGCTCTTTGTTTGCACGTGATGTCATACATAAACCAACATGGTGAATTTGACTTT
GTTGAGTCAAGCACGGTGCGTGCAACATCATATAGATTATGGTTGGACTGTGAAGTTGCT
CCTGGTTGTAGTTAGAACCAAGCACAAACAAATACTCATCTGCATAACATGAGAGTTGCT
CAATGTTGCATGGATAATATGGATATAGGGCACTGGATATGAGATACATGGATGTGAAAA
GGGAAATATGAGATACGACCAATCATTGCCCGTCGATGCGTCCGCGGGCGTTTGAGGGAT
CGAATTTGCAAGTTTCGGCTGTAGATGCTTTAATGCTACTAATTTGATGGCATAAATGTT
GATGTGTTATTGTATAAATACAATCAAACATAAAGAAAATTGACTTTCCAATAAAGTTGG
AAGTAGTACATTCTTTCAAGGACGAAGCGAGTACATGTCTATCCATTAGATGGCTGAAAC
TTTTATTTTTTCTAATCGTTTCTTTCTTGTGAACATAATACAATCATAAAATGCTGAAAT
ATATATTCATACATACACCCTGGCCTTACAAGCACCTCCGAGATACCGTATGCATAAAAA
ATGTTGATCATCTAAGCTACGCTTTGTTAACAATCCGGCCATTTGTTAGTGCCCTTGCAT
TTTGCATCCATATCCATCAAAAAAGAGGAATGGGGATTGTTGTTTTGCAATCTTGTTTTT
TTTTTCTTTGACACAAACCAACTATTGGGTGTTCTTTGTTTTTACAAAACAATAAAATTT
ACTAATAGTTAGTCAAGACATACCTAAGTACTTCATGTGTTTGCCAATCAAACAACATAC
AATTCACATCATCGTTGCAGCTATGGCATATCCATACCATAATTCTTGAGCTGAAATCAA
AGTTCCTGTGACAACTCTCACGACCAAGTCTGTGGTTCACGTTTGTCCTCATAATAGCAT
CCATCAACATTAATGCTTATGAAAACATTGCCAAGTTGTTTACATTTATGCTTACTTTTC
GGGCGTGGTGGGGTGGACGCATGGCCAAGAGGTGGGCCGCATGGGCCCCTTTCGTTTCTT
CTTTCATATGATGCTCCTTATTTTCATAAAACAAATGTCCAAAATTCTTGATATTTTTTC
GAGTGATGATTTTCAAACCTTTTTAAATACCTATTTTTTATGCTAGAGGTTTTCAGGGTT
GCCAATAGAATAATATTTAATTCTTCTTCTTGTTTTTTGTTTCCTTTTAAACAAAATGTT
AAAACTAATGTATAGCCATTTTTGACATATATAGAAATATTTTTCTCTTTCGTAAATGTG
TAAACACTTTTAAAAAGTTCGAACACTTGAGAAAACTTTGTGTATTGTTTCTACAAATGC
GTTTTTTTGGAAGTACATGATTTTTTTTAATTGAATGGACATTTATCAAAATAGCGAGCA
CTTTTAAATTACATGAACATTTTGCAAAAACATGAAACCTTTTCAAAATATCATGAAACA
AATTTTGAATGACATGAACTTTTGTAAAACAAGCAATCATTTTTTTTCAAAGATGTGAGC
AGTTACACTTGATTTTTTTTACGTCATTGGATTTAGAATTTACATATAGTAAATGAATAA
TTATGATCATATTGATTTAATACATAAATAACCAGTATAAAAGTAAGATAACATTCATAA
AACAAAAAAGTTACATTTCATATAGTTTTTATACTATACCTTCACATTTATAATTTTACA
TCCTGTAATATATCTTTTCGACAGACACCATTTTCTTACCATATTTTTCCACTTTTGAGG
TAAGACAAATTTTACCGGACGAAAAAATATGGCTTAGTGAAGTAATAAGAGAGGGGCGAA
GATACATGTATTTTCTTGCAAGGGGGGGGGGCATCTATATGTTGGATTAACATTTATCAC
ATTTAAGAACATTTTTTTTACAATTACAATATTTTTAAAACAAATTATTTATTTTTAAAA
ATAAACATGAATATTACAAAACGTTTTTGAAAATAAAATATTGGGCATGACTAAATCCGA
GGGCTCTCCCTGAAGAAAAGATAAAAAATAGATTAATGGCCTCTCTTGGAAGAAAAAAGT
AATGCTATGGTTGCCATGGGTCGTGGTCCGGTGCTGACCCAGTTAACATTGTATTTCCTA
CATGAGCATAGTATAGCAAGGCTAATCCTATGTGACACATGACAATGAATCCCGTAGTGC
ATGCGTAAATGGGCCAGGCTCATCAGAAATTAATGTTTTATTATTACTTTTTAGTGTTTC
TCCGATCCAGCTGCTCTTGAATTCCTAGCTTGTCGTGAAGCTCTAGCGCTGGCTACAGAC
CACCTACACACAAGAGTTGTGGTGTCTTCAGATTGCAAGGAGAGAAGGAGGTAGTATCAA
ACATCTCACAAGGCAATGGTGGGAGTCATGCTCAAAATACGAGAGACATGAATTTAATGT
CTTTAGATTTCCAGTTTTGTTCTTTCACTTTCAAAGGTAGAATTTCGAACATCGTGGCAC
ATAGCCTCGCCAATTACGCGCTTAGTCTCCTGATGGTCACCTTGTGTGGCTTCTCCAACC
TCCAGATCTTAATTGTATTCCTTAGAACATTCTTGAGTAATAAAAAAAGTGTGGTTTAGC
CTAATTTTTTTAAACTTTTTTCCTTTTTGTTTATACTTTCTTTAATGTGTTTGTCCCAGT
TATTAAAATTATTTTTGATTTTTTTGTTTTTTTTTTAAATTTTACTCCTTCCGTCCCATA
ATGTAAGATGTTTTAATTGATTCTCCATTATCTGTTTTTTCTTGAGCGATTTTTCTGCTT
TTATCTCTTTTCTTTTAAAATATTTCCATAACTTAATTTTGGTATTTAAATTTGCATTTT
TAAGAGCATATTTTTTGTAAAAATAATATAGTTACAATTTTGTAAATCCATGATTTTTTT
ATTTAGGAATATCTTTGTTCAGATTTATTTTTAAATATATGATGTTTACATTATTTTTCT
AAAATATGTAAAAAAACTTGAACACTTTTTTTATATATAGTTCATCATGTTCTAGACATA
GTGGTTGACTTGACCAAGATGGAACATCAAGGGAGTGCACTTCTGTGCTAGCAGAAGTAT
TCACAGAAGTATTATCATTTCCTTGGCTTTTTTCATTTTCCTATTTTTTTTAGCGAATTG
CTGCTTTTATCTCTTTTCTTTTAAGTTGTTTCCCTAGATTTCTTCTGTTGTTTAAACTTG
CGCTTTTTCCTAAAGGCATCATATATTTTATAAAACAATTGACATTTTAATAAATCCATG
AAATTTTTACATTTTGGAATATTTATGTAAAAAATTATTTTTAAATATATGGTCTTTATT
AAACTGTCCAAAATACATAAAAAAAGGAACCAGAAGAAATCGGAAGGTTTGTGTTTTTCA
TATAGAATTCATCTTGTTCGTGATACAATGATTGACTTGACCGGGCTCAAACATCAAGGA
AGTGTCCTTCTGTGGTACCAGAAGAATTCACAGAAGTATTATCGCTTCCTCGACCCATGG
TACGCCCCTACATCTACTTCTCTCTACTAATGTCGGAGATGCTTCTCAAAAAAGGAAAGC
TCAGAGACAAGTGATTGTGACAAAAAGAAATAAAGAAACCCGGGGATACGTCGGGTCGGG
CTGGGTTTCGGGCCGGGCTTGTAAAAGCCCGACGTTCTATTCTCAAGCCCAAGCCAGCCC
AAAATACACTTTTTTCTCAAGCCCGAACCCGGCCCGGATGCAGTTTTTTCATTGTTTGCA
CATGTAAGCCGGGCTTCAAGCCCAAAAGCCCGCCCCGAAATCCTTAAAAAGAGAAACCCG
AGCCGGCCCAAACTATCTTTTGGGTTGGAAAATGAAGCCTGAGCCCGGCCCCAATGCCAA
GCAACGAAGTCTAGTATTTTCGGGCTGGACTCAGGCTGGGTTGTCCATGTCTGGTTTACT
AGTAACTAGCAAAAGAGCCCGTGCGTTGCAACGGAAGAGAAAATGACACACATTCTTAGG
CCCTGTTTGGAACCATAATAAATTATAATAATCTGGATTATGAACATAGATTATATAATC
TGGTTTATAAAAATAATCCAAGTGGGCATGTTTGGAGGCCAGATTATATAAACT