Contig Data
morexGenes
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Map Locations of contig_49457 (6457 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_49457

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64881 5 2995 bp MLOC_64881.2 Available Available LOC_Os08g40180.1, FRAME:-1, EVALUE:0.0, 13108.m04294 protein 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed





CDS Structure of MLOC_64881






Contig Sequence (6457 bp)

>contig_49457 6457 assembly3_WGSMorex_rbca.fasta
AATCATTGTGCTCCGTATGTAGACCCTTAGTGAAATAGCTTAAAAGACTTATNNNNNNGA
ACGGAGGGAGTAGTCTATAGTGAAATCTCTAAAAGGTCTTATATTAAGGAACGGAGTGAG
TAGCATATATAGACAACGGATTAATTTGCCAATATTTTTTGAATTACTATTTACTACCCA
TCTAAGTTCAAATATGATTTCTTTGTTGCATGTTCAATCTATTTTGGGGGCAACAATTTA
CAAGCCACAAATTAAATTCTATACATATAAATTATGGCAAAGAGACCTATTTACAATAGG
CCGTGGGATGCGAAGTTTTTAGTATTTGACTCGCCCCCCTATGTCTAATCTCTGGTTTCA
CCTCTGGACATGTACAATGATGACATATAAATACAAATGTCTCATGACAAAAAGTAAATT
AAGATATGTGTATTAATTGTTTTTCTCAAAATCAAGCTATCATTAGTGGGCCTCATAAGA
AAAAGGGAAAGTCTTTCTAGAGATTTCACTAGAGCGCTACATACGAAGCAAAATGAGTGA
ATCTATACGTTAAAGTATGTATATATACATCCGTATATAGTCCCCCTGATGAAAGACTTA
TATTTAAGAACGGAGGGAGTAGCAGAGAATACGAATGGTGGACTGCTATTATACCTGGTT
ATATATATGGATGAACCCACTTATGCACAGATCATAAAGCGTGTGAATGGTGGATGCTAT
GACTATACATACCGGAACCGATAAAAGACTTTACGGATTGAAGGTTTTTAATTTAAAATA
TATTGTTATAAAATACATTATTTAAGGATTAACCGATCATTGTAGACGAACGCGTTCGGA
TAAACACATCTGCTCTCGTGTGTTTAGGACCCTCGGGCCCGGGCGCCTGGCCCGCCGGAG
GACCACCGATGAGGGCGAGACCGTTGTGACAACGTGAGCCACTCACGCTCCGTATGCATA
CGTCACGTGCACCAAACACGCTGTCTGCACTCCCATCTTGCCTCTTGCCAACGGCAACGG
GCATGCAGCGATGCGAGCTACGGATGGACAGCATCCCAACTCTCAAAACACTCGGATCTT
TGGGCGGTGCTATTGCCATGCATGCAGCACACACGCAGCTGCGTCCGCCGTGCACGCCGA
GTTCTGTGTCGTCGTAAAAGACAGCGCAATCTCAGGTCCATGTGCCATGCCGGATCCAAT
CGGCAGAACATGCAGCCACATGCTCAGCCCATCCATCCACCAAGTGGATCGGCCGACTGG
CACACTCTGCTTAATTATGTGCGGCAGACACAGGCACCAGATTACTACTACTCGCAGGTG
CCGATACTCAGTACCAAGATGCCCATCGGTGTAATGATCGGTACATGCATCAAACCAACC
CGGGACAGCAGGCACGCGAGGGCGACACTTGAACATCTGCTGACACATGCATCTGATCTG
GAATATTAGGCAGATCTACAAAAGGTCATGGTGCTCTGGAGAACTCCACCGAGACCCACA
TCTTTCTACAATCACGTCACCAACTTCGACTAGCAAACAGGAAAACAAGGACCAACACAA
AGGTGAAACAGCTAGCACTACAAGGCTGGCTTCCTGAAGCAAGCAGAGACATCTCTACAC
TTCGATTCTACAAAAAAGATCCCCACACTTTGCGCGCCAAGGTAACCAACCAGCCACAAA
GCCTTATGAACACAAACAGGCCAAAAACGTCAGCTTCTCCGGTGCCTGCCCGGGGCCGTC
TGACGACGATGAAAGCAGCAACACGTGAAGAACGACGACGGAAACACTGGCCAGCATCAC
CGATGAAGAAATTGGGCAAACTCTTCTTAGCTTGATGTTAATGTTAATGGCTTGACGCTG
ATGAGCATGTTAATTTCGTCTTAAGGAAGACAAGAGCCAACCAAGCCTGTATGTAGAATC
AAGCCACACTGTTGATTTCTGCATTGGTTTCTCGGGCTGCAGCTCCTGGAGTCAAGAACT
TAAAGATGCGGCCTTGGACATGTCCCTGCTGGATCTGTTGTACTTCATGTGGCTCTTGAC
GAGCTGGCCGGCGGCGAGGGCGGACAAGAGGGACAGCTCCCCGGCGAGAACCCCGCCTGC
CACCACGGTGGCCAGGAGCCTCGCGTTCGACCCTGGCGATTCCCTGTTGGCTCCTTTCAC
GCCCAGCAGGTCCAGGCATGCAGACTGTGACGCCAACTGAGTCCCACCACCAACTGTGCC
CACCTGCATTTTCAGTAAATAACAATCACAACATGTCGACCACTCATCAATTCTCAGATG
TTATCAAAACAAAACCATCCTACACAGCTCAGCATGTTCTCGGAAACAAACAAACAAACA
TAGGATATATAAGGAAAAATGTGTCTTGCCCTAGCAACACAAAGCACAAGACTGAATAAT
CGACAAATTAGCCTGCTCAAGATAACAAGTAGCTAAATAGGAAAATAAGGCATCAGAAAA
TATTCCTTTTCTACTGGAAAGATTCCTCTGATATGAATTGGCTGATTGAGCTGACGAAGC
ATAGTTGGATCTTATGTAGCCAAAATATAATTTCTGTTACAAACTATTCAAGTGTATAAC
GAAACACTGTTCTATATTATAGCCAGAGCACTAGGCCATATGAAGTGATACAGTTAGAGT
TGATACACCGCCTTTTCTTTATAACTCTAAATAGGTGCCAGATGGGGATGGGCACTAATT
TTAAGGAGCAACAATACATGGATAAGGACGTGAACATATTAAGTATTAATTAACCCAATA
GAGACCATAAGTTACGTGCAGAGCATTTATTGTGTATCGAAATTGTAGAGGGACCAAACA
AATTGTATTTTATGATCATCATCAGCACAATGCCTGGATATAGTGATAACAGAACAAATG
AAAACAATACATTTGCATACCTCAATAGAGGGCATAGTGACAGATATGTGAAGATCTTTG
CCATCATTTACAGCTTCCAACATTGTGATGCACTGAGAACTTTCCACATTTTGTGCAGGA
TCCTGGCCGGTGGCTATGAAGATGGCTGTTACAATATTGCTTGCGTGGGCATTGAACCCC
CCGAGAGCTCCAGCAACAGCTGAGCCAGCAAGATTCTTGATCACATTTAGTTCTACTAGA
GATTGCACATTGGTTTTCAGAACCTTTTTCACAATTTCCTCCTTGATTACTGCCTCACAA
ACCACAGACTTGCCACGCCCCTCGATCCAATTTACAGCGGCTGGCTTCTTGTCAGAACAA
AAGTTACCTGGTTTCAATAACCAAAAGATAGCAATTAGATTCGGAAAAAAATATATGAGA
GCATAGAGATCTAATTTTACTCGTACAATGCACATAATTGTGGTAATGATATTGCTGTAT
ATTAATGTATGGCCAAATATGATATGCAAGATGACTAGGCTGTTTTCCCTCCCATACGGT
CCAACATGGATCGGATTCCACTATCAAAATGATAACGGGACAGCAGATGGCTCAGTTGTT
AATTTGTGTAAAAACAAAAAGGTCCCATTGATGTGCATCCTTCAAATATTTATTCTTGCA
TACTTATTCTTGTAGTTTACGCACTTTGTTCTGAACCTTCTACATGCATGATGTTAAAGG
AATAAAGATGGTTCCAGCTACTCCAAGTTGATACTTATTAAAGTCAATATCATTTTTGAC
TCATATTAGGAATCTTGCATTAAAGATATATCCTTTTACCACAAAGATTGCTTTCAAGGA
CGTTTCTAAATCTTCCTAATGCATCATGGCAAGTATCGTATGTAATTGAACAATCTTACA
GTATGCCAAGTTGGCCTAATAGTAATTTGATTTTACAAAAGGTATACTTTGATTGAACAT
GCCAATGTCCACCATAGGTTGTCCATAAGCTCAACCAGATAATTCAACAGTGCACCAACT
TATTCTTGTTAATCCTTGCTGAAAACGGGGCGTAACTATGTGTATCATCAAATGGCCACT
CTGCTTATTATATGAAGGTTTTTATTTTCTTTCGGTAAGCCATAGTCTGTCTTGGAAAAA
AATAAAGGTTGTGACTAAGAATTTTATTCTGAAGAGAAGATTAGGTGACTCAAGTGAGCT
AGTTCAGCTTCTGCAGGTGGTGGCAAAGCAAAGCGAACCTGATATGCTAATGACATCCAT
GTCAGGGAAGTCATCCTGGAGGTAATCCAGCACGTTCTGCACGCCCTTGGAGATCATGTT
CATCCCCATGGCATCCCCTGTGCTGCAGCTGAATCTCATGTACAGGTTCCTCCCAGCCAT
CGCGCACTGCACTCCCTGCAGCCTCCCAAATCTGCTCGACCTGCTCCGATATCATATTTT
CCGAACAGTTAATTACCGTGTTGTGTTCTACAAAGAGAAAAAAACAAATATTTGACAAGT
AATACTCGTATCATTTGTCATGAGAAGAGAGCTACAAATCTTGAATAAGAGAGTAAATTA
TGTCATGAGAAGAATATTAGTATTGAATGAGACACGTGACTTCAGCCTCAGAGACGTATT
GTCGAACACAAGCTGGGTGTTAATACAATGCCATCTGTTGCATCATAAGTTCGTTGTCGT
GTAGTATTTGGTGATGAGTGTTGGTGTACCTGTTGAAGACCACGGAGAGAGTATCGAAGT
TGGCGGGGTCCTCGAGGAAGGCCTTGAGCTCGGCGGCGCGGCGCGCGGTGGGGAAGCGGG
CGACGGGGGCGCGCGTCATCGCGTCCCGGAGCACAACGCTGGTGGCGCCGCCTGACTCGG
CTATGGCCTTGCAGCCGCGGTTGGTGCTGGCGACAAGGCAGCCCTCGGTGGTCGCCATGG
GCACGTAGAACCGCTGGCCGTCGAGCAGGAGCGGCCCGGCGATGCCCACGGGCAGCTGGA
CGTACCCCACCGGCAGCTCGCAGCACTGCCCGAGGATGGACGCGTAGTCGAAGCCGTCGA
GCGGGAGCCCCTCGATCTGCCTCCCCGTGATCCGCCGCACCGCCTCGCGCCGGAGCCCCG
CGGCGCGCCGGCAGTCGCCGAGCCTGGTCTCGAGCACGTAGGAGGGGACCTTCCCGGCGA
CGACGGAGGCCACAATCTCCTCGTCCTCCTCGGGCATTTTCTCGGGCACGACCCCTTCGG
CGCCGCCGAGATGCCCGCACGGCGCCGGCCCCGGCGCGGCGGGAGGGCCGACCAGGAAAT
CCTCGTCCTCGTCGCTGGACGAGACGATGGACTGCACGAAGGCTATCCCGAAGAAGCTGA
GCAGGTAGATGAGCGAGGCGACGAGGCCGAAGACGGAGAGAATCTCGGTGAGGTCGACGA
CGTGGAGCGGCGTGGAGGAGCGGATCTTCTCGCGCCACCGCCGCATCAGGTAGGCGAGCG
AGGCGGCGAAGAGCGCCGAGAAGATGAGGTTGGTGTGCCGGATCGGCAGCGGCAGCGCGT
CCCCCGCCTGCAGCACCCGGGGCGCCCCCGCCTGGCCCACTGCCGGCGGCGCCACCCTCC
TCGGCCTCTGCCGCGCATCCATGCGTGCGCGCGCGTCGGAGTCAAACGTGGGCACGGCTC
GGCCGCTCGGTGTGAGTGGGGCGGTGGCCGTGCCGCGAGAGGGAGCGGGTGTTTCGGGGG
CCTCGGGATGCGCCCGCCTCGGCCTTTTTATTGCCAGTGTCAGTGGCAGTGGCAGCCCAC
ATGCCCGGTGCGCTTACCGCGCGGCGACCCACCTGCGTTGAGGCAGGGCCCGCTCCGCGG
CTCGGCCGACATGGGCCGTGTGGCCTTCCTGCCCCTTCCGGGTTGTTCGACGTGTACACA
AAACGGAAACTTTTTGGAACGCTCTACATGTGCTACCGTGGCACGCCTGCCGATGCCAAC
TGCGGATTCCAGTAGTGTCTAATTAATTTTCATGCGGGCGAAAGAGGGATAACGTTCAGA
TCAATTGTGTTTTGAATAAGTGATTGAATCCATTTGTTTTATGGATTACAGGAGGCTTAT
ATATCTTTAAAAAAACACGACAATTCATAGAAGAAGTCGGTTTCAGGAAGATGCGTTGGT
TGGAGAGGGACATAGGCATCCGTGCGGGTGCAACCGCACGTCCGTTAGGCAAGGTGAGAT
TTTACCTTAATTATAGTTTGTAATTTTGTCTTAATATCCTCCTAATCTACGATTGACGAT
GTAGAATCATCTTATAATTGTCGAGGTATAGCTATCATCTCAAAAGGGTTCTTTTTTAAA
AAGTTTTTCGTGAAAACTTGATAAGAACGTGAAACATAGACTCACGAAGTGATAGCATAG
TGTGATGTCATTAAACAAGGATATCTCAAGAAGAGACTTCCGTGATGCCTGCTAGTCCCT
AGGTCGTCGCATATCAATTTCATGAACATACTCCCTCCTTTCCGGTTTATAGGGTTCAAA
TCTGAAATCTCATCAACCNNNNNNAATTGTGAGTGGATGACACTAGTTTTAACTAGCCAA
TGAAATATTTTTCACATACTCAATTTCCAAGGCAATA