morexGenes - Barley RNA-seq Database

Contig contig_49437
Source Contig contig_49437
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49437 (9040 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_49437

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64867	3	2502 bp	MLOC_64867.2	Available	Available	LOC_Os02g50960.1, FRAME:+2, EVALUE:0.0, 13102.m05785 protein auxin efflux carrier component, putative, expressed
MLOC_64868	1	184 bp	MLOC_64868.1	Available	Available	None
CDS Structure of MLOC_64867

CDS Structure of MLOC_64868

Contig Sequence (9040 bp)

>contig_49437 9040 assembly3_WGSMorex_rbca.fasta
ATGTTGAAGAAATAACCATGTTTGCCTCGGAGTTTGTGCATGAACCGTTGCTTCAAGTTC
ATACGATTTCATTCTCTCTCTTCTTTTATTATGTGCCATGTCATCAAAATCATCTATGTT
GTAATTTTACCAACGATGATCATACGACCATTGATGATGCCCTTATACCAACGATTAAAC
ATACGGACTGTTGGATATGCTCTAAGAGACGTGTGGCGTGTATATTTTTAATGATTTGAG
ACTAACTTACACGACATACAGTGACCAATTCATTACATGCAACGATATTAATTAGCAAGT
TAACATTATTTTTTTGGGGAGTGATCTGCGGCGGCGCGCCGCCCCAAACTTTTGACCGGT
CGCGCGCGGGCCGCGGGATCCACCAAACCCCGCGCGTCTGCACCGTTGGATCCGCATGCA
ACATTTTTTCTCCTATGCAGCAAAATTTCGATGCGATGCATTAATTTTTTCAACTGTTGC
AACAAAAAACAAATTTTGTAGCAAAAAATATCTACGTGATCGTAGCAAAAAAACAAAGCT
GATGGTACGTGGAAGCAAAAGTCAAACGTCGGTTGTAGCAAATATTTACGTGACGTGTAT
GNNNNNNNTTTAGTGAACGGTTGCAGCAAAACATGATACCGGTTGTAGCAAAAAGTAACA
CGGTTGTAGCAAAAGTAAAAAACATCAATTGTAACAAAAAATCCGACGAACTGGAGTTAC
AACCAAACGTATATGTAATTTTTTTACTGGGACAAAAAAGTAGTAAAAAAATTGTTTAAA
GCCAAAATAACGTTGGTTGCAACAATTTTAGATGGAAAATGTTGCATCAATTGATCAATG
AAACGCGTGAGTGGGAAAAATGTTGCAATGCCCGGACGCGCGAGGGAGGACCGGCGCGTC
GGTTCGGCCGGCGCGCGGATGGGAAACGATCCCCTATTTTTTTTTCCGTCTTAGTTGTGG
TGTACTCCCTCCGTTCCTAAATANAAGACCTTTTAGAGATTGTACTATTAACTACATACG
GATGTATATAAACATATTTTAAAGTATAGATTGACTCATTTTGCTCCGTATGTAGTCTTC
TAGTAAAATTCCTAAAAGGTCTTATATTTTGGAACGGAGGGAGTACAACCTAAGATGTAT
AAATCGAGACGTAGGGAGTACTATACTACTACTTCCGTCGCCGTCCGAGTCCGACCAGAA
GCGTAAAAGAAAAAAAAGGGTGCGTATCGCCAGCTCGATTCCCATTTTCCAGACCCGCAC
AAAAAAAGACCATTTCGTTATTTCACGGCCGTCTTACGGGCAGTACTACGCGGGTGACTT
GCCCACTCGAGCAGGCGCATGACTTTGCGCCGCGCCACATCAAATCCGGCGCAGGGGACA
GTGAAAGATACGGCTCAGGCGGCTGCCATCCCTGACCCTTGCCGTATGAGGAATATTCAC
CGCTACGCGCGCAGCCTAGGACCCCTAGCGGATTCTCTCTCCGTCTGGTTTCACCTCATT
TGTGGCAATTTCGGGCCGCACTTTTTCCGATTCCGTTATGGACGGACGGACGGATGGATC
ATGGATGCATGGATGGATGGCTCGGGGATTCGGGGGAAAGCGAAGGACGGGGAGCGGACA
CGTCACGGCCTCCCCCTACTGACCGCCACCCGGCGAGTCCATTTCTTTCGCTTCACGGCG
GCGTAAGTATGGTGCGCGCGAGTTCCCCGATCGCGAGGGGCTAAAAGAACGTCTCGCCGT
CGCTTCATCTGGGTAGTGTGTAGGGGTACGTACGGCGTGCATTTCGCCACCCCCTAACAT
CCCGATTTCGCACCAAAACATTCGAATTGTGAATCTAAGAGCAACTCCAACCGCGTGACC
TAAACGGAAGCATGTTTTATCTATTCTTGTCTGTTTGGGTCGACATGATCATCCCATTTT
TAAAAAGAATTGATCGTACGTCCAACAAGATGACCCAAATCTCGTCTTTCTAGTCCATGG
CAAGCGCAATCCGTCGGCAGCGGATTCGCCAAATCATAAAATTTCATTGCCGTCGCCGCA
GATCCACCACTAGGCCTCCTGCACCAGGACGAAAGATGCACCCCGTCGATAGATTTGCTG
CTAGAGAGCTAGGGTGGCCGGGGAAAAATGGGATCGTCAGCCTAGGGTTTGTGTGCTTAC
GGGCAAAGGGTGGGGGAAGGGGATAAGAAGCAGAGACCGTGACGCACACTGACGGGCCAC
GAAAAGGAGCACGTGGGCGAGGCGCGTGTCCGCTCCGTGTGTGTTGCAACGCAAATGACG
TTCAAATTTAAACCTAACAGGAATCATGGACGAACGAAAAACGGAAGCACGTCTGTTTGG
GTTAACGCTTTGGATTAATCTTTTTGTCCTTGATGACAAAAACGAGCACGAATGAATGAA
ATAAATCGCGCGATTAAAGCTACTCTAATGGCTCATGAACGGATCAACTTTCTTGTGTCA
GGAGCCATTTTTCCGTCCCTGGATCCATGTCGCAGCTCACGGAGTGTGTATGTGAGCCAT
GCCATTATATAATTTTGTTTTTTACTAAATGACCCTTCTATAAGCTTAATCCTTTTACTA
TCCATCTATAAAATTAATATATCATCTTGTTAAGCTTAAGTACTAGTCAACGCAATCAAA
AGTTTAAACTGATGATGACGCGGGAATAAATTACGAAAGGCAGAACTTAAACTCAAGACC
TTAGCCTTGATATCATGTTAAGCTTCAAGCACTAGCCAACACAGTTCAAAATCCAAACTG
ATAAAAAAGATTATATAATCCATATATATACTTCAACACATCTGTGTGCCGATAAAATTG
TCAAATTGTTTGTCATTTTTAAATACGTGGTGACTCCATATGATTCATTACTTACCTATA
ATTCATGCAGCAGCCCGTCCTGTGTGCCAAAAAAGTCAAACAATTTGACCTTTTTATCGA
GGAGAAATTTTGAAAATAAGATTTTGAGGGTCAATGAGAGGGTTTAGTTTCCCCTAAATA
AATGACCCTCCAAACTAGCGAACGTTCGCGAGGTGAGGTGTGCGAATGATTCGATGGGGT
TTTAGTTATGATGAAATGGAAAGCAATAATGCTATACTTACAAGATGTTTCAGAAGACAT
TATTGAATGGAAAGAGGTGGTAGTTTTTTCAGAAGACATGGCAGTTTCTTCCTGTGAAGG
TAATATTTTCTTAAGATATGCCATGTCATTTTAAACAAATTGGCACACAACACATAACTA
AAAATGCCATCAAAATCATTTGAAATGCCAACTTTTCCAGTGAACGTTCGTCAGACGACA
TTACCGAGAAAAAAAAGGAGAGGATTTAGTTTCGAGAAGGGTCATTTAGTACGAATGTCG
AACGGTACCCGTGCCGGGCGTATGTATGTATGGTGTAGGGTGTAGCTGTCCCCATACGGC
CATAAACAATGGCCCGGCGCATGCACTGCATCTGCTTCCATACCCCCCATTGGCTCCTCA
CCAACTCGTCGCGGTCTCACTCGCTCGTCTCCTCCTCCTCTTGTGAGCCTGAGATGCAGG
GGAAGGAGGGCAGCGCGGCGTCGGATAAAAGCAAGGGAACAAGGGATGGTCCAAAGAAAG
CTTGGCCCGCGCTGCCATCTCGCCTAAATAAAACTCTCCCCCACTCCACCACACACCCCC
GCCACCAGCCGAACGCCCCTCCCCCTCCCTCCTCACTCGCTCGCCTGTAAAGACTGAGCT
GAGCCCGAGAGCTCGAGGATCCATTCCTCCATTGGCGAGCGAGAGAGGTCGAGAGGAGCA
AGGAAACACAGGGCAAGATGATCACGGGCACGGACTTCTACCACGTGATGACTGCGGTGG
TGCCGCTGTACGTGGCCATGATCCTCGCCTACGGCTCCGTCAAGTGGTGGGGCATCTTCA
CGCCGGACCAGTGCTCCGGGATCAACCGCTTCGTCGCGCTCTTCGCCGTCCCGCTCCTCT
CCTTCCACTTCATCTCCACCAACAACCCCTACACCATGAACCTCCGCTTCATCGCCGCCG
ACACGCTGCAGAAGCTCATGATGCTCGCCATGCTCACCGCCTGGAGCCACCTCTCCCGCC
GCGGCAGCCTCAACTGGACCATCACCCTCTTCTCCCTCTCCACGCTCCCCAACACGCTCG
TCATGGGCATCCCGCTGCTCAAGGGCATGTACGGCGACTTCTCCGGCAGCCTCATGGTGC
AGATCGTCGTGCTCCAGTGCATCATCTGGTACACCCTCATGCTCTTCATGTTCGAGTACC
GCGGCGCCCGCATGCTCATCACCGAGCAGTTCCCCGACACGGCTGGCGCCATCGCCTCCA
TCGTCGTCGACCCGGACGTCGTCTCGCTCGACGGCCGCAGCAACGCCATCGAGACCGAGG
CCGAGGTCAAGGAGGACGGCAAGATTCACGTCACTGTCCGCCGCTCCAGCGCGTCGCGCT
CCGACATCTACTCGCGCCGCTCCATGGGATTCTCCAGCACCACGCCGCGCCCCAGCAACC
TCACCAACGCCGAGATCTACTCGCTGCAGTCGTCGCGGAACCCCACGCCCAGGGGCTCCA
GCTTCAACCACACCGACTTCTACTCCATGGTCGGCCGGAGCTCCAACTTCGGCGCCGCCG
ACGCGTACGGCATCCGGACCGGCGCCACGCCGCGCCCGTCCAACTACGAGGAGGACGCGC
CCAAGCCCAAGCACCCGGCGCCCGGGGCGGGGCACTACCCCGCGCCGAACCCGGCGGTGG
CCGCGGCGCCCAAGGGGCCCAAGAAGCCGGCCGCGAACGGGCAGGCCAAGGGCGAGGACC
TCCACATGTTCGTCTGGAGCTCCAGCGCATCGCCGGTGTCGGACGTCTTCGGCGGCGGCG
CACCGGACTACAACGACGCCGCGGCCGCTAAGTCCCCCCGCAAAAGTAAGTAGCGGCAAT
CTCTCTCGCCGCCACGCACTTCGCTCGATTTGTTGTTGATTTCGTAGGCTGAGGCTCAAT
TCTTGCTTTCTTTATTGCTACTATTGCAGTGGACGGAGCCAAGGAGAGGGAAGACTACAA
CGTGGAGCGAGACGACTTCAGCTTCGGGAACAGGGGCGCGCTGGACAGGGACGCGGAGGC
CGGCGACGAGAAGGCCATGACGGCGGACCCGAACAATGCGATGAGCGCGGGGCCGACGGC
GATGCCGCCGACGAGCGTGATGACGCGGCTGATCCTGATCATGGTGTGGCGCAAGCTCAT
CCGCAACCCAAACACCTACTCCAGCCTCATCGGCCTCATCTGGTCGCTCGTCTGCTTCAG
GTCCGTACGCCCCTCCCTCCATCCCTCCCTAACTAATCCAGCAACGTAGCGATCGACATT
AACCACGACTCTGACGCGCTTGTCTCTGCATTCACTGGCGCCGCGCAGGTGGAACTTCAC
GATGCCGGCAATCGTCCTGGGATCCATCTCCATCCTGTCGGATGCGGGGCTAGGAATGGC
CATGTTCAGCCTCGGTCGGTGTCCATGCTTCCTGCAATCCTGCTGCTACTGCTATTTCGT
CCTATGCAACAGTGGGCTGGGTTCTTCTTGCTGATGAGTCGACCTGGTGGTGGGCGTTGC
AGGTCTGTTCATGGCGCTGCAGCCGCGGATCATCGCGTGCGGGAACAAGGTGGCGACGTA
CGCCATGGCGGTGCGGTTCCTCGCCGGCCCGGCCGTCATGACCGCCGCCTCCTTCGCCGT
GGGCCTCCGCGGCACGCTCCTGCACGTCGCCATCGTCCAGGTACTTGCTTGCCTCGCTTT
GGTCTCAACCATCGAGCCGAGGGGGGTGAAAACTGAAAAGCAGGGGGGGATAAACAAAGA
GCGAAAAGGCTCGGTGTGCCCGTGTCCCTTCTTTTCCCCAGTCGCCAGTCCCCTCGTGCT
CCTGCTTTCGCGCCCCACTTTCTTTGGCCCCCCCTTCCTCTAACCTTTTCCTCTCCGGCT
CCGGCCGCACGACAGGCCGCGCTGCCGCAGGGCATTGTCCCCTTCGTCTTCGCCAAGGAG
TACAGCGTGCACCCTGACATCCTCAGCACGGCGTAAGTACTTATTACAGTAGTACTACCG
TTCTTGCTGTGCTGTTCCCGGTCCGGCGAGATGCGACGCTCCCGAACTCACCGTTTTTTC
CGCTTGGCTTTGCAGGGTCATATTCGGCATGCTCATCGCCCTGCCCATCACGCTCGTCTA
CTACATCCTGCTCGGCCTGTGAGCCCGACTCCCTTGTAAAGGTCCATGGCTTCGCTGCTG
CGGGCTCAGGAGCAGCATGCTTGGAGTGACCACCAGGGGGCTCTTCATTTTTCCTCCCCT
CTCTCTCTCTCTCAGGGTCTCTCTAGAGCAGCAAGATAATGGTGGCGCTCCTAGCTAGGT
AGGACAATGGCGAGAGTCAGTCAACAACAGTCAGAAGGGCAGGGGAAGAAGCAAGTGCAA
GTACAGAGCTTGGGCGGGGGGACTGGGGTCGCAGAATTGGTTCGGTTCTGAAAGGGGCTT
GCGAGTTTTGGTTGGCTACGCCGACCCCTGTAAAATGGATGCCGTTCTGGTATAACTGAC
CTTGATTGTCTTGTTCATTAATTCCATGGCACTCCTGACCCGAGAGATCGAAGATGCTCC
GGCTTCGTTTCTCTGATGATTGTGACGGAATTCATCTCACTGTCGTGCTGTGACGTTCCA
TGTATGCTTTCGTTTCTTACAAGTGTGCATCACGGAAGTACGCACAGCGCCAAATCGTTG
TAACAGTGATGAGCGGCTGGCATGGCTGCGCTTGATTAAGTCGAGCTGTTCGAGGCCACA
GAAACGCATGGGCGAGGCCGGCCGTTCAAATCAGTGATCGCTGGTTTGATATGACGTGCC
GGCTACAGTTGTGTGCGGCCAATTAGTATCCGGACGACTTAAGCCGCATGCGTGGAGACG
CCACCATGAAAACAGGTACTACTGGTCCCATTTGTAATGAAGAAGCCTTTCCTCCGATGA
ATGTATTAGAGCATCCCTAACAGAGTCGCCGTAATCCGTAATCATCATAATCGTTTGTTT
GGCAATTTTGGTTGCAAATGACAGCCGAGAAGAAACGACATCCGCGCACGATCTGCATAT
TTGAAACGTACTCCGTCCTGAAAACGGTTTTGCGCGATCGACATTTCCCTTTCCCTATAG
TCTTCCTTCATGCATTGCCGCCTTCCCCCTCGTCGTACTATCGCATATGACCGTTTTCGG
TCGTCCCAAGTCCACGACGATGATGCCATTGACGTCTCATCCAGCTCCACAACCTGGTCC
GTTGATGTGGAGTCGAATCCCTTGACTTTGATGACGGTTGCGCCTCCTGCCCCTCCGACG
GCCGCCTCACACCATCTTGCCCACCGTGAAGGCGCAACTTAAGCGCAGAGGTGACACACC
TTATGCCCCAGTCGCAAGCGTCAGCCTAATCCTGTCGGTGCCGGAACGCCCCGCAAGAAA
GAGACAAAAGAAGTAGGTGGGCTATCCGCTTGCCCCTACACCCTTCGTACAAGCGGCGAG
CAAAATTCGAACGCCTTCCTAGCCCGACATGGGACAAGAAACACGACGAGGTAAAGAACC
ATTCATGTCCCTTGTATTTGTATTGGTTCCATTGAATGCGAGGTGACAATGGAAAAATGT
TGCAATACAACCTTTGTGATGTTGTGAGGATTTTGTGTATTTGCTAGGACAGATGGTCAA
TGGAGAATTGTTTCTCAATAATATGATGGGTGAATTAGTCAAGAGAAACGATTTCGATCT
GGACGGTGCATTGTTATTGCATTTTGAGATAGAAAATTGGATCAATTCCATCCACCTGGT
TCATCGAGGAAGAAAGCATTTTAGGCCTCAAACTACACCCAAGATGTGAATATTGCTCAT
GTAAGCCCTTTTTCATGGTGTTCAATACGCCATCTAGTTGCTCGGATGGCGTACATATCA
TTCTGTACATCGCAGGGTCCTCCTCTCTAATTAGGACTCGAGACTAACCGACGACGCTCT
ACACATATACGATAAATGTCTTCTTGTGTGTCTGGGTGCTGTCGTAGGAATGATCTTGAC
AATAATACCAGGGGTACGAATGAGGAGCGGAGCCTAGCTATGGCGCAGTGGATACACTCG
GATATACGAGTTCGGACCCCACTCGGGAGTGGTAACAACCCTACGTCTCGAGCCCTGAGG
GTGATGTTTGCTTATGGCGTGTGTGATAGTAGAGGATGATGAACCCTTGGTCAGGAGCTC
GGGGGTGGCTTATATAGAGTGCGCCACGACCGGTCAAGCCTCATTACAAGAGCGAATTAA
TGCTAATAACTACGGAAGTTACTAGAAATGGCAGCTCTAAATCCAACGTTACTCGTAACG
CACGTCTTCACTTCACTCCATGTGATAGTCTAAGTCTGTAGTCGTTGCACTCCCTTCGTT
GCCCATGCCTTGCTGCAGTCCGAGTGTCGGGGTACATCCGACTGACACGAGACGATCCGA
GTGACCTTGTGCGGGCCGAGTGAAGATATACTCACCCGAGTGAGGTCATGACTGCACCGG
TGGCTTTTGGCACACTAATGTCCATGTAGGGTCTTAGACAGGCCTAGGGATGCATGTCCG
TAGGACTACCCCTAATGTACAACCGCGTTAGTAGCCCCCAAATTAGTTCAGGTTTTACTG
ATCGAGTGGAAGGCACACTTTTGTGCCCCCGGTGTCTCAGGGGCGCCGAGGTTGTAGCTC
GGGGCTACATCACGCGGGCTTTCAGTAAACCACTGTGGATTCAAGAGCGAAAGATTCCGA
GTGCTGGAGCATGCCGGCACGCTTCCAAACGGTAATAATTGAAAACCTTTCGGGAAGATA
AATTCAATGATTCGGACGATCGCAAGCTCGGGGCTGCGATTGTCCAGTCGGCGAAGTAGG
ACGGGTCCCACTCGTGCTACGGTACGTGTGATATGGTTGCCTTCTTTGTTGGAAATATGC
CCTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTGTTTCAAGATAATCGTTTATT
GTCNNNNNNATAATTGTATTGAATGCAAACATAAATGCAT