morexGenes - Barley RNA-seq Database

Contig contig_49414
Source Contig contig_49414
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49414 (9671 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_49414

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64858	1	922 bp	None	Available	Available	None
MLOC_64857	3	2159 bp	MLOC_64857.1	Available	Available	LOC_Os03g04000.1, FRAME:+3, EVALUE:0.0, 13103.m00406 protein AMP-binding domain containing protein, expressed
CDS Structure of MLOC_64858

CDS Structure of MLOC_64857

Contig Sequence (9671 bp)

>contig_49414 9671 assembly3_WGSMorex_rbca.fasta
ATCATCACCATGGATTGGTATTGCGTGTGCATCGGAAATTTTTTGTTTCCCATGCTACGT
TCCCCAGTAGGGTTTACTACAAATACTATGTCAGCTACATGATCATGCAAATCAATATGA
TGATGAAAATACAAGTCATGAGAAGGAATGATGAAAGTTGCATGATAATCGGAATGGCTA
TGAAAAGGCCATGNNNNNNNNNNNNNNNNNNNNNNNNNAGGAAGATATAAGGTGTCTTAT
GTGTGATAGAGCATATCATATCATGGGATCTGGATGCACTGGCGAAGATTGCATCGATCC
TCGATGTGAGAATGGGCAATGCAAGGTATCGAAAAGGCCAACAAATATGAAAAGGTGAGA
GTGCGCATAACCATGGATTCACATTAGTCATAAAGAACTCATATACTATTTGCAAAGCCT
TATTAGCTCTCTCGAAGCAAAGTACTATTGTATGCCTGTAGGAAGAAGGTTAGTAGGATT
TAACCATCGCGCGCCTCCGACCCCAACAACACATAGGATTTCATTCAAATCTAAGAACGC
CCACACATCATCATCATGCCATAACTAATATTTAGATGAGTAATTAATATCCGTCTTTAA
TACTGATATTTTTACTAACAAACAATCATGTATTCATGTCCTTTCATGTTACTAAATCAA
TATAATTAACCCACGGTTCTCTTTTAGTGCGTTCATGGAAGTTTTTATTATATCCTCCTT
GAATACCTATCCTTTTTAGACTAGTCTTATAACCCGTACATATTGTCACTGCTCCCTTTT
TAGACTCTCAAAAATATTCAAGTGCATCATGAGAGTACAATTGTTTCTATAAAATTTGCA
TGCCGTCGTGCACTAAAAGATATAAGTGAAACACTAGAGCAACTGTCTAGCTAAAAAGGT
AAGTGAAACACATAGAGTATTCTAAAAAATTATGATGAATATGTGTCTCTCTCAAACAGG
TGTGTCCACAAAACAATGGTTGTGACAAACTAAAATAAAAGCAAACTATAATACACGCCG
CTCCAAACAAAATACATATCATGTGCTCCAAGTGACATGTCGATAAAATAGAGACGAAAG
AGGGGGTGCCTTCTAGGGCATCTTCAAAGCTTAGAGGTTGGGTCTTCCTTGAATATTACC
TNNNNNNNNNNNNGGCATCCCCAAGCTTAGGGTCTTGCTGCTCCTTATTCCTTCATCCAT
CATTTTCTCATTCAAAACATGAAAACTTCAGCACACAAAACTCAATAGAAACCTCGTGCG
ATCCGTTAGTATAATAGGCAAATCATAAACTTTATGTACTTTTACAAATAGATTCATATT
TAATTATTGCATAATGTATTGTATTCTAACTTCTTCATGACTTATAGTCCCATGATATAA
TCCATAGCATCATCAANNCAAGCAAACTATGCAAGCAAAAACGAGAATATGTCTAAAACA
GAACAGAATGTAGTGATCAGCAGTAAAACCATACTTATATAGCTCCGAAAATTCTAAAAA
AATTAGGAAAACTTGGGCAATTTGTATATAATTATTTTTAGGGAACCCATATCAAAAAGA
CGTTTCACTAAAATCAGAGAAATTCCACACTCGACGTAAAAGTTTCTATTTTTGCATAGA
AACAAATTAAGCATAAAAACACAAACATAAAAGTAGCAATAATCATGTCAACACAAAATA
ACATAAGGTAGAACAAAAAAAGTTAAGATAAATATTGGATGATATGCCAATCCAGTCTTT
TGAAGGTGTTCATAGAGGCCGAATGTGCATGTCTACGTTTATAGAGATGAATGTATGTGT
GTTTATATGAACGATGATGTCTTTACTGTGTTAAAAACGCTCATGGTGAAATTTTCGTGT
TTGCATTTGGGAAAAGATTACACTCAACTGGCTGATTTTCCAGCTCCCGTGTGTCCCCTT
GCTTGCACAACAAGTGTCCTACATCACATGTTGTTGGCGCCTGATAACGGTTTTCCAACC
TTTTCAACACCAGCAGTGTTGCAGGAGTATCTCCCGGAACATCAACTATGTTGCAAAAAA
GATGAGGATGAAAAAAATGCAACAAGGCCTCTATAGTGAAAAAAATCTGCAATAAAACCT
CGGGTGTAAAACAGTACTACAACAAAATTGAAGTTGCAATAAATCCTGCAACAAAATTTT
CATTACAGAATATTTATGCAGCAAGACCTCTATTGCAGAAAACTTCTGCAACAAGGTCTA
TGTTGCAATGGTGGAGGGCGCTAATATGCAAGATCTAACGGTCCACGAGCCGACCGATCT
TTTAGAAAGAGAAAAGATAATATCCACATGTGTGGGCATTTGCATCTCGCCCACACGCAT
GGATCGGCGTCCGTTTGTGGTTGCACGAGTCTTCGGAAGTTTTGCAAGATTTTCTATGCC
ATGTAGGACTCGGCTAGTGTGTGGGCATTTAACCACTTTGCCCACACACCCGTTTCTCTC
TAAGCAAGAATCTTTTTTGGTTTTCGGCTTAAAAATGTTTTATCTCCTAATTAAAAAATC
CAATTAAAAATCCGTTTTCATCATTAAATCCGTCTCGACGAGATCTTNNNAACTAGATCC
CATGTTGATATGTTTCAATGTTTTTTTTTTACAACAGTTGCCATGATGTTACACTCTAGG
TGCCATAGTGTTTATGCTACACTTGTCATGGCATGTTCTATCTATTATTTTCTTCTAGAT
TTAAAGCTAGCGTTATATTTTCAACTATTTTTCACAACAATTTTTATTAATCGCCCATGG
TAATTTTTAGTAATTAACCACGGCAAATTTAATGCATGGATCATGACAATTTTTAGTAAT
CCATCATGGCAAATTTAGTTTATGGATCATGGCAATTTAGAATTTTAACCATGATCGATG
AAAAAAAATTGACCAAAAGTTACCATAATGTTTACAATGTAGTTGTCATAGTGTTTACAC
TAAAGTTGATGTGACGTTCTATCTCTTCTAGATTTAAAGCTATCACTATATTTTCAACTA
CTTTTTACGGCAATTTTTATTAATTGACCATGACAATTTTTTAACCATGACAATTTTAGT
TTATGGTTCATGACAAGTCTAGTTTCTTAATTCTCCGTTTTATAATATGTCAAAATTTAG
TTTTAAAGATAGAAGAAAAAATAGCTGAAACATATCATGGCAACTTCGGTGTAAACACCA
TGGCAATTCATGTGCAATAGACATGGCAACTTTTAACCATAGTTAAAAAAACCGAACCGG
AAATTAAACCGAAAAGGTTGTCGGTTTAGGTTTTTATCGGTCGGACCGCCGGTTCACCGA
TTCGATTGTCGGTTTTTTAAGCAAAAAATAATAAATGTTGAGTAAAATATGTGATAATAT
GGTGTGAAACAATTGTCAAATAAAATTATTTTCATGTAATGGACAACAAAGTAGCATAGC
CGAGTTGGTTATAGGGTCCTGAGTAGGCCTCGCGTAATGCTCACACGACCTCGGGTCGAA
TCCCACTTATTCCAATTTCTATTAAAATATTTTCCTGGTTTTTCTCGGTTTAGTGACCCG
GTTTTTGACTGATTTTCCAGAAAACCGACCGGCTCGATCGGTTTTCTCCGGTTGGATTGC
AGAACGGTCTTATTAGCTTAAGAACCCGCTGAGGCTGCCGGTTCCGGGTTTTTTCGGTCC
GACCGCTGGTCCGTTCCCGTTTTTTAAACTAGGCTTTTAACCCAAAAAAGTCATCGAAAC
ATATTGATATGAGGTCTGATTTTGAAGATCTCGTCGCGATGGATTTAATGGTGAAAACGG
ATCTTCAATCGGATTTTTCTTTTAAGAGATAAAACATTTTAAAAACTGAAAATCCAAATA
GATTTCTACATGCATGCATGCGATGACGTAAGGCACGAAACTGAACATGTGAGTGTTAGC
TATTTTACCCACACGTATATGTACGGACTGTTTGTTTTTGTATACCACACGAGATATATG
ACAAGATCTCTTAACATCCAAATGCATGGCGTTATCATAACCCTTTATAAAAGGTCAACG
GGCGGGAGCGTAGCACGCCCCTTCGTATTTAAAAGATTTCACAAATCATTGAGTTTTGTT
CTTTGGACTGCTTACCGGGCACACCGCGCGCATGCACGTTTAGCCCGTTGATCACAGAGC
AATCACATACCCCTGCATGGGCCCACCGGGTTTTTTCCCGGTTATCCATCCATTTGCGCA
CATGGGCGCACGAGGCACGCTTTGCAGCTGACCACCCTGTAAAGTTTGACGAGTGTCGAC
GGAGACCACCCGCCCGCCACCGCCACCGCAGGCAGAGGGAGAAAGCAGTTACTACTCCTG
CAACTGGTGAGACGACCCACACAACGCACACCCGCGCGCACGAAAGACGCACGCACAGCG
ACAGCCAACCGAGAGAGAGAGACCGACCAGCCGGCGCGGCGATCCGATCGCGATGGCCAC
GGCGACGGCGGACCCGCGGAGCGGCTACTGCGCCGCGACGGGCGCGTTCCGGAGCAAGCG
CGCGGTGGTGCCGCTCCCGGCGGACCGTGACCTGGACGTGGTCACCTTCCTGGCCTCCCG
CCGCCACTCGGGCGTCGTCGCGCTCGTCGACGCCTCCACGGGCCGCCGCACCACCTTCGC
CGACCTCTGGCGCGCCGTGGCCGGGGCCGCCACCGCGCTCGCCGCGCCGCCCTTCGGCCT
CCGCAAGGGCCACGTCGCGCTCATCCTCTCCCCCAACTCGGTCCACTTCCCCGTCGCCGC
GCTCGCCGCCATGTCGCTCGGCGCCGTCGTCACCACCGCCAACCCGCTCAACACCGCCGC
CGAGGTCGCCAAGCAGGTCGCCGACGCCCGCCCCGTCCTCGCCTTCACCACCCGCGACCT
CCTCCCCAAGCTGCCCCGCGGCCTCCGCGTCGTGCTCCTCGAGCCTCCCTCCCCCGCCGA
CGACCCGCGGATCGTCGCCACCATCGACGAGATCTCCGCCACCACGCCCGACCCCGCGCG
CCGACGGGACCGCGTCACGCAGGACGACCAGGCCACGCTGCTCTACTCCTCCGGCACCAC
GGGGCCCAGCAAGGGCGTCGTCGCCACGCACCGCAACCTCATCTCCATGGTCCAGATCGT
CATGAACCGCTTCCGCCTCGAGGACTCGGACACCACGGAGACCTTCCTCTGCACGGTGCC
CATGTTCCACGTCTACGGCCTCGTCGCCTTCGCCACCGGCCTGCTCGGCTGCGGCGCCAC
CATCGTCGTGCTCTCCAAGTTCGAGCTCCCCGAGATGCTGCGCTGCATCACCGCCTACGG
GGTCACCTACCTGCCGCTCGTGCCGCCCATCCTCGTCGCCATGGTCGCGCACCCCAAGCC
GCTGCCGCTCGGCAACCTGCGCAAGGTGCTCTCCGGCGGCGCGCCGCTAAGCAAGGAGCT
CATCGAAGGCTTCAGGGACAAGTACCCGCAGGTGGAGATCCTGCAGGGGTACGGGCTGAC
CGAGAGCACGGCCATCGGCGCGTCCACGGACTCGGCCGAGGAGAGCCGCCGGTACGGGAC
GGCCGGGCTCCTGTCGCCCAACACCGAGGCCAAGATCGTCGACCCGGAGACAGGCGAGGC
GCTGCCGGTGAACCGCACCGGCGAGCTCTGGATCAGGGGACCCTACGTCATGAAAGGTAC
TACGTATATTACACAAAAATTAAACTTCATGAAGCATCACCCTTATACGTTATTCCGCCG
TTTTCATGTTTCTTAGACGATCCGGCATTCTCTTTGATTAACGTGCTGCCCGCTGGGAAT
TTAGAATGTCTCTGGATCACTGCGAATCATCAAGGATGATTGCACACAGCATACTGAACG
TGTTCTGAGTTAATCAACACACCGATTCCGTTTAGGAGTAGTTATAATTGTATTTTTCAA
GATGAACATTCTACTGAATTGCGTTTCCATTTGTAGTTAGAGATGATGTGTCATTTTGTT
CGATTAGCAAGCTACAGGCTGGAATTTAGAATGCTAAAATGCCGATTCGGTTTTAATTCT
AACTGTGTCCTCGTTTTGTTTAGGCCACGCGGCATTTTGTTCGATTAGCGAGCTGCAAGC
TGTAATTTAAAATGTCTCTCTCGATCACTGCGCATCCTCAATATACTACACTAAACATGT
CCAACATCAATAGAAGAATTTTGTTCTTATCGGGAGTACAGACGCATGTTGGCAGGTCTC
GCGAATCTTGATAGGCAACATATGGTAATTCGTACGTGACCATCATGTGCATCATGTGTG
AGTAGTTCAGGATGTGTTTGAATGATGCCGGCTTGACCTAATTTGGATGGTGAAAATGCC
TGATAGCTAGCTACTCTTCTCTCTAATGCTTCTCTGTTGTGGTAGGGGAGTAGTGTCAAC
GTAGAGCCAAAGCTATGTTCGTCTTTCCTTTTGCCGGTTGTAGGTGCCACCTTCAGTTAC
TGGCTGTTCTGCTGTGGCTGATGATGGTGTTATTTGTTTTCCGTTATCATACTATTTGAA
GCTTAGTGGAATATTAGTACTCATAAAGGGATTTTTCAGACAGATACTTATAGGAGGCAC
TACCCAACCAACCCAGGTCTGAGTCATCTTTGCTGCATGTTTCGGTATCCATCCCTCTAA
ATAATAGTGGTGTCAACAGATTGAGTCGCATGCTTAAATTCCAGAATAAGTATGCCTGGC
TTGGAATTATTTGTGCGTTGAGAACCAAACGCCCATCAGTTGGTGGATGAGTTCATTGAA
CTCCCATCCGCCTTGTTGATACTTTGGAAAATGTTAATTGCATTGAGTGCAATGTGTCTT
TTTTTCCCTGGAATTCACTACATGAACTGTTTTACGACGGTGCATCTGGGTGTGTTTCTG
TGTTATCTGAGAGGTTAACTCGAGACGATGTTTGCATAACATGAACATGTACACTAGTTA
AGTAAGCATTGCAAATACTACCTCGGTCCCATATTAGTTGTCGCTCCAATGGCTAGCACT
AAAGTATCCTCTAGATACATCCGTTTCAGCAACAATTAATATGGAACAGAGGGAGTAGTT
AGTAATTAACTTTCAGAAGTGCCGAGGATAGTTAGTACTCCCTCCGTCCCAAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGCTTAAGACAGTTATTTTGGG
ATGGAGGGAGTACTAAGGGGAAATTTCAGGTGATACCGACGGTTAGGTGATACTGTGATA
CGGGCTTCTGGCCGTTGGCATCTGAGAGGTTGTTGTACCTGTGCGCAATTCCTAAACTTT
TGAGGGTCTTCTTTGCAAAATGTTTCGGAGCCACAGGGCCGGATCCAACGGCTTCCACGA
GCTCGTGTCATCGTAGCACCCTAGTTAGTAAATACTACTCCCTCCGTTCCTAAATATTAG
TCTTTGTAGAGGTTAATAGTGAACTACATACGGATGTATATAAACATATTTTAGAGCGTA
GATTTAATCATTTTGCTCTGCATGTAGACCCTTAATAAAATCGTTTAAAAGACTTATATT
TAGAAACGGAGGGAGTACCACTGTAACTAAATATAAGACTTTTTTGACACTTTTGGTACA
GAGGGAGTACACTAGTTAACTTTCAGAAACAATTAGTTGAGTACGCTAGTTAATGCAGAA
GTTGTACCATGACATCATTGTAAAAAAGACCAAAATTCAGTTTGAAAAGAAAACAGAAGA
AATTAAGACTAAACTGAGTACTGGTTTTAATATGCACACATCCACATGGAGAATTTTTCA
AGGATTGCAGGATCTCTTGCTTCGTAAGTGAAGAATGTTTTCTCATTGCTTACTGTGTAC
CAGCCAGAGCTCATGAGATAAACCTTAGATGGATTCATTTTCACGGCATCGTATAAGCAT
CAGTAGGGTTGTGAGGGATGTGGTCCGACGACAAGCGATGGTCCAATCGAAATAGTTATT
TCATTTTCAAGACTTCACACTGTCCAGCTGCTAACGTATTGTGAAACTGAGAGTTAGGAT
CATCAACATTCAGAGTGAATATCCATCGGTTCAGTCCCTCTAGAATATGGTACCTCCTGC
ATTTCAGCACCCTATAAGAAATGATGTGTTTCAAGAAGTTATCGCTCTGTTGTAATCCCT
TGGCAGGATGAAACTTGCAGTCCAAAGTAGAAGTGTTCATACTCCTCCATAGACATATAA
TGCTAGTAGGAAAAAAGAATCTCAAGTTGCAATATTGGTCTCCCCAGGATACTTCAAGAA
CACAGAGGCAACACAGTCGACGGTGACGCCCGACGGATGGCTCAAGACCGGTGACCTATG
CTACATAGACGAGGATGGGTATCTCTTCGTGGTGGACCGTCTGAAAGAGTTGATCAAATA
CAAAGGCTATCAGGTAAAAAGACCACTAAATGGCACAGGCCGGTATCTCTTCCGAAAAAC
AGGCTCCTGAACTTCTTACTGTACCTTGGATTTTGAATTCAACCTTTGTGTAAAATAGGT
GCCTCCAGCAGAGTTGGAAGCTCTTCTGCTGACCCATCCAGAGGTTTCCGATGTCGCTGT
TATTCCGTAAGTGTTTACCGAGATATCAGTAATCACTTAGTGAACTTCTATCCATATAGT
TGTGCCAGATTTCTCAAGTGGTTTGGTTCTTCTGCAGGTTCCCAGACAGGGAGGTCGGTC
AGTTCCCGATGGCCTATGTCGTGAGGAAGAAAGGGAGCAATTTGTCAGCGCAGGAGGTGA
TGGAGTTTGTGGCGAAACAGGTGAGCAGAGCAAGACTCATGAAAGATAAAATCCAACAAA
ATGAACCTTCTTCTTCACCATTGATACATTGACAGATTTGGCTAGCTGATCCATGCAATC
TCTCTGACCTTCTGCTGTGATATGTTGTACAGGTAGCACCTTACAAGAAGGTGAGGAAGG
TGGCGTTCGTGACAGACATCCCCAAGAATGCGTCTGGCAAGATACTGAGGAAGGATCTTA
TCAAGCTCGCGACCTCCAAGCTGTGAAATGTGGACCGTTATCCTGCTCTGTGTATTATCC
CTTGAAGTGTCAATTGGTTCATCCTTGGATCTTCATCATTGTACAACTATTGTTTTCTTT
TTGCCCTTCGTCCCAATAGCCCTCTGACTATCTGTAACTGAAGGATCTCAGCGGCTGTGT
ACTAGTACATGAGGTCTCTGTGTAAATTGGTTCTATATACAAGCTCTGTTGTACCTAGAC
TTGAACAACCAAATCCAAAATAATTTCCGAGTTTGAGGTGCAAGTACTGCAAATGCAAGG
CATTATAATTAGTGTGTATATTTATACAGGAAGATTAACATTGCTCACCTTTTTCGAAAA
AAGCGGGAGTTTATTATCCAGTATATTCACGTGATTTCTTCTTTCTTGGTTACGGTGGCA
TGTACATCAAATTGTATGTATGTTCCTAATGCAAGGAAAACCTTCACTTAATGTTCTAAA
AATATTTTAATAAAAAGACATAAAGACTCAATTTCAAACTCAATTCACATATGGAGAAAC
AAAGATGAGAAATCATACTGTGAATAGCAGTTTTTTTAGTTGGTAAACAGCTGTTGATTC
ATACTGGGCCATCTTGGCCTGTTAAAAAACTGGGCCATGAATCGGGCTCATTAAAAACTG
GGCAATGAATTGGGCTAATTGACTCAACAAGTGCTTCTTAGGGGAGGAGGGGGGGGGGGG
GGGTGACGGGG