morexGenes - Barley RNA-seq Database

Contig contig_49372
Source Contig contig_49372
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49372 (6114 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_49372

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64828	1	1615 bp	MLOC_64828.1	Available	Available	LOC_Os01g08330.1, FRAME:+3, EVALUE:1e-145, 13101.m00870 protein aspartic proteinase nepenthesin-1 precursor, putative
CDS Structure of MLOC_64828

Contig Sequence (6114 bp)

>contig_49372 6114 assembly3_WGSMorex_rbca.fasta
GCAATTGAAAAAAATGTTTGCTAATTCAAAAAAGTTCATGCATTTCAAAAAATGTCTTAA
AATTTAAAGACATAACATGATCAGCATCATTGAAGATTTAATTGTTTTTCTCCCGTTGCA
ACGCGCGAGCTCTTTTGCTAGTTGAAATAAAAGAGATTGCTCAGTAGAAAAGAAAAAAAG
CATGTCGTGCGCAGCCGGTTAGCGCGAGTGAATCTGGCGGTGCAGTCTCTGGTTCAAATC
CCCACTTTCCCAGGAATTTATCCTTCTCTTTATTCTTTTCTCTATTCACTGACAAGTGGA
CCCAGATGGGGTGGGGAGTTAATTTTTTTTTTTGCATCGAATGGGGGTGGGGAGTTGACC
GGTCAACATAGAGAAAATACGAAGCTGTACGTTTAGATGATGACCGTATAATCATCAAGA
TGGATATATAGTGATCATACTGACTAAGTTCTTGAGTACATGAACCAAAGTGAATCAGCG
AGACAAGTAGAGTGACCACGTGTAAATTTTACTCAAAGCTTAAAATAGGAGAAACATAAA
GAGGCATTTTGGCTCTCGGTGCACATGCTCCTGCATAAACAGTAATAAAAAATAGTAAAT
ATTTAAAAATAGTAATATTTTTTATAGATGTTTATGTTATTGTCGCAAGTATGCTTCACA
ATTTTCATGGGAAACGGAGCAGTGCGAGAAAAAAATTAAGGGTGAATTTAGGTGTAACAT
TTGGTGTTTGATTTTCTTTTGCACCGACCAAAATGTGCCTAACCTTTTTACCTAAAAATT
TATAGATAGCATCTGGATGGACTATGAACATATATAATTTTTGTTCGGACTTTTTGACAT
TTCAAAAATCATTTCCATGCACAGAAACACGTGCATCCAGGAGCCAAATTGGATTTCCGA
GAAATTAACCTGTTTAATCCTTACCATTTCACAAAGATTTACCATTCTAGAATTTTTGCC
GGGTGGCCGGTGACGTACTTGCCAATCAATCGATCAGTGCCACTCGAGTGCCCGATCACA
AGCATTGGCAAGATTGGCAAGTAATCACTTGTTATCTTTTATCACGAATTAATAGCAGAA
TCTTCAGTTTCACGCACAAGATGATCTCCCCCTCATCCCCAGCTTTCCAATACGTAGAAC
CTACCCTTAATTCCATGCTTGATGCAGAAGGTAATTAATTGCACATAATTACTGCAGCAA
GCTGGTAATTAATATTCGTCAATAATCAGCACTTCATATCATATCCTGGTTTGCCAATTC
GTCTCACCATTAACTTCGGCAAAATCCCCTATTATATGTATCCACGCATAGCAATTAGCA
GCAGAAGCAGCAGCAGCCAATCCTTGCATTGGGAGTTGAGCTCCACAGTGATAGGTCACA
ATGCCTGCGACGACGACGGCGATATCTCGTGTCCTTCTGCTCGTCGGCGTCGTCCTGACG
GCCCAGCTGTGCGGTTGCACGGCGTACGGCGGCGATGGGTTTAGCGTGGAGTTCATCCAC
CGCGACTCCGTCGGGTCGCCGTTCCACGACCCCTCGCTCACCGCGCACGACCGCGTGCTG
AAGGCGCTCGGGCGCTCCTACGCCCGCGCCGACGCACCGTCGGCCCACGGCGTCGTGTCC
GAGCTCACCTCCACGCCGTTCGAGTACCTGATGGCCGTGAACGTGGGCACGCCGCCCACC
CGTCTGCTCGCCATCGCCGACACCGGCAGCGACCTCGTCTGGCTCAACTGCAGCAAGAAG
GGAGCCCACGGTCCTGGCCCGGTGTTCGCCGGCGACACGCCCACTCCCCCGCCGCCGCCG
CCGCGCGTCGTGTTCGACCCCTCCAAGTCCAAGACGTACCGCCTCGTGGGCTGCGACTCC
GTTGCGTGCCGAGAGCTCCCGGACTCCTCCTGCGCCGCCGGCGACAAGTGCACCTACTAC
TACTACTACGGCGACGGCTCCGCGACGAGCGGCCTCCTCTCCACCGAGACCTTCACCTTC
GCCGACAACGCCCGCGGCAAGCGGACGACGCGCGTGCCCAACGTCAACTTCGGCTGCGGC
ACGACCTTCGTCGGCTCCTTCATCGGGGACGGCCTCGTCGGCCTCGGCAACAGCAACCTG
TCCCTCGTCACGCAGCTCGGCGCGCACGCCTCGGTCGGCCGGAGGTTCTCCTACTGCCTC
GTGCCCTACTCCATCAACGCCTCCTCCGCTCTCAACTTCGGCGCCCGCGCCGCCGTGACG
GAGCCGGGAGCGGCCACGACGCCGCTGGTCCCGTCCAGGGTGAAGACCTACTACACCATC
GACCTCGTGTCCGTCAAGGTCGGCCACGCGACCTACAAGGCGCCGCACCGGTCGTCCCCC
GCCATCGTCGACTCCGGCACAACGCTGACGTTCCTCGACAAGGCGCTGCTAGACCCACTG
GTGAAGGAGCTGGCCGGGCGGATCAAGCTCCCGAAGGCCGCGCCGCGGGCGGACCTCGGC
CTGCCGCTGTGCTACAACGTGAGCGGGCTACGGGAGGGGCAGATCGCGGCGAAGATCCCT
GACGTGAAGCTGGGGCTGGGCGGCGGCGCGGCGGTGACGCTCAAGGCGCTGAACACGTTC
GTGGTGGTGCAGGAGGGGACCCTGTGCTTGGCGATTGCGCCGGCGCCGGAGCGCTTGCGG
ACGTCCATCATCGGGAACATCGCGCAGCAGAACATGCACGTCGGTTACGACCTCGACAAG
CGCACCGTCACCTTCGCCGCAGCCGACTGCGCGAGATCCTACCCCGCCAACGCACACGCA
CCGGCCCATGCCCACGCCCACGCACCCGCCCCCGCCCCGGCACCAGCCCCCTCCGGCTCC
GTGTAGGCGTGTAGCCATAAATCTGTTCACCATTACTCAAATTTTATGAAATGATCACCA
ATACTAGCAGTCCGTATTTTTACGAAGGGGGGAGATTTATTTGCTTGTGCCCGCGTGCGT
CAACATTGTGAAACAAAAAACAAAGGACGTGTGGCTAGCGGCGCTGGAGCATTTTTTTTT
TTACAAAGTACCGACCCAAACGCTTATATGCACGCGGATACACGGGTCCTTATAAAAGCA
CACACGTACATCCTACCCATATAAGCATTTTTGAAAAACTAAGACGGCATACATCTTGAA
ATTTACGAAGTTCGTAGCCACCTCGTCATCGAAGGAAACGTCTCCTTTCACTGAATGTGC
ATCGCCGAAATTGCTGAAATAAATCCAGAAATAAATTAGAGCACCAGGATTTGAACCCTG
TTGGGTTGAGGATACCACAGTCCCTTTAACCATTCAATCATAGATTGGTTCGCGTTGGAA
CGCCCGTTGGTAGGATCAAGCGCACTTACAATATGAAAAGAGCACCCAACCTACGTGTCC
TACACGGTCCATTAAAAAAGAAATCTTGTCCACACGTGCATTTATTTGGGATCCAAAAAG
TTTTAAAAAATGTAACTTTTTATTTATGCGTCAAAAATTCAGTTTCATTTTCACACCTGG
GTTTCTCATGACGAGTTTGATAGATTTCGTCGAACTTTTTTTTGAGACAATTTTGGGTAC
GATGGAGGCAACTTTACTCCTATAGGAAAACAACTTCATTTTTTTGACTAGCAGGTCTAT
GTATTAGGTTGGTTTGTGTAAAAATAAGAAAATCACACAAAGCATGAGGCACCTTTTATG
CTACATATAAGCATCTTCATTGCACCATGTGTATCAATGTATTTTGCTAACATTATCCCA
ATTTGCGTATCGTGTTTCCTCAGTTGCCTGCCGTGGATGTTCAGTTGCCTATCACTGAGG
CCCAGTCACGTACAACCATTGATGCCCAGTTATCTGCTATTGGTAATTCGTTATCTATCA
TTGCTGCTCAGTTGTCTAACTTTACAAATTAGTTACCTAGAATATTGTGAAGTTGCTTAT
CACAAGACAACTCATGTGTACTCTCAGTCTAACTTTGTTTCTAGACAAAAGCAACCACAT
ATGAAAAAGTCTAAGTTCACTATTGATGGCGTTAATGGAGACAAAACAAGGACAATGACT
TTGAGATCGTTATGCACTCGAGTATCACACAAAACCGTTAGCAACTTTTGGGGTGTTTTT
GGTGCAACTCCAGTGCATTAAACAAATAACTCATGTGTTTTTTCATTATTATATCTGGAG
ATTTTAATAAATTTTGTGAGCAACTCGTGCAAGTATTATGAACAACTTGTGTGTGTTTAT
GGGCAACTGTCTGATCAACACCCCTATAGAACTTTCCATCTGCCCCCACTTATGCAACTA
TTCAACACCCATGACCTGGCTCGTCAACATCCATGCGTCGCTCAGTAGTATTGCGGGATA
ATCCCCTAGAAAAGGAAAGCACAAGACAACCATCCATCCCCTTAAAGAGTAGTGAAACAT
CATATCACAGAAAGAGTAAAAAATGGCATGACAAAAAACATTGTTGAGGAAATCGTTAAC
TGGTAGCTGCTCGGTTGGCTAGTGAGTAGGGGATTAATAGGCTAATCGGCAAGTTAATCA
GCCATTTAATTATAGTTAATCGGCCGATTTATCAATTAATTGGCTACTCGGTGACCAAAC
GAGTAGGGATTAATCGGCAAGTTAACTGGTTAACCGGACGAATTCTTGAACAGGGACAAA
AAACACATAGGGTTATCCAACTTTTGTACTATTTTTGCACCCAACTTCATGCGAAAAAAT
ATGATCAACTTGCATAGATTTGTTGGCAAACCGTGTGATATGCCCCCTATGGAACTTGTG
ATCTCCCCCTAGCAACTCGATGTATCACTCTGTGCAACTTCTACTCATCTTGTGTGTATG
CAACTATACACATTTGCATATAGCAATTGTTCTTGCAAACTCTAAGCAATCCCCCCCCCA
AATCCACACAGCTGTTCTAGCAAGATCCAAAAGAAACTATTCATAGCAAAAAATTCAAGC
AATTACCCTAGCAAATCCAAGCAATTGTATTACCACAAGAAAATGCAAAATTGTTTCTAG
GAAAACCAAGCAAGTTCTACCAAACCACAATGCAAAATTGTTCTAGCAAAATGGAGCAAC
TTTCCAACAAAACCAAGCAACTATCCTATCCAATCCAAGCAACTACATTACTAAAAAAAA
ACTATGGTAAAATTGTCCTAGCAAAACCAAGTAATCTCCCCTAGCATTACTACTCGGATT
GTCTAATTTAGGCGGGAAAAAACGTACGGCCAACTTGAATAGCCTTCGTGGACAACTATG
TGACCCTCCCCCCATACAACTTATCTATTCTACCAAAAATCCAAAACAACTCAATTACCA
AGAAAACAAAAAATGAAGAAGTGTTCTAGCAAAAGAATTGAAGTAATTTTCCTAGCAAAA
AAATTGGACAGTTCTAGCAAAAAAAATTGTTCAAAATGAATCCAAGCAACTGCCCCAACA
AATCGAGAGAAATTAAAAATGATAATTAGTAGCCTAACAATGAAGCCCAGGTGCATGTCA
TCGCTAATTAGTTGGCTACGATACTAGGAGAAGTTGCCTATAGGTGTAACCGATGTTGCA
TATACTCTAAAACATAGTGTTAGCATACTTAATAGTGTGATAGACAACTTATGTTATTTT
GATGAACATGATAGTCAAGGCAGGCAACTTATAAGGACTTCCTGTTGATAGGCAATCATA
GTAGGCAAACTAATAAGAAGTTGTTTTCCTATAGTACTAAAGTTGCCTCTTCAGCATTCG
AAGTTGCTCTAAAAAAAATCATTGAAACATATCCATATGGGATCTAGTTTTAAAGAACTC
ACCGCGAGAAACCAACAGTGAAAACAAATCTAAATTCTGATACTCGAACAAAAAGTTATG
GCTTTTCAAATTTTATAAAACTCAAATAAATACACGTCCTTTTCCTTTCTTAGCTGATTT
GTGCAACTTAGAAAACATTCGAGTAGATGAAGACTAGATGTTTTCCTTTTTATAGTGTAA
TGATGACACAAGATGCTAATTTAGGACAGTAAAACTGAACCTAAAGCGAGCCCTCTGAGT
GTTTTGGTTTTTTGGCCGTCCATTTTGACGATCGGGCCGTTTCTAGCCGTCGGATGTGAT
GTATACAGCCACCTCCAACACACTTTTTCATCGTCGGCCCGACTGTCCTAATGG