morexGenes - Barley RNA-seq Database

Contig contig_49331
Source Contig contig_49331
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49331 (8028 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_49331

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64799	1	2311 bp	MLOC_64799.1	Available	Available	LOC_Os12g05900.1, FRAME:+1, EVALUE:0.0, 13112.m00599 protein rhoGAP domain containing protein, expressed
MLOC_64800	1	1280 bp	MLOC_64800.1	Available	Available	LOC_Os12g05890.1, FRAME:+3, EVALUE:3e-23, 13112.m00597 protein expressed protein
CDS Structure of MLOC_64799

CDS Structure of MLOC_64800

Contig Sequence (8028 bp)

>contig_49331 8028 assembly3_WGSMorex_rbca.fasta
CCTGTTCGACGGAATGCCGACCGGCGGCGGCGGGGACTATATGCAGAACTTGATCTTCGA
GGGTGGTACGCCGGCCGCTGGCTATGATCCCGTCGAGACACAAAGCTAGGACGGCCGAGG
GGCGTTCACGCCGTCCACCTTTGATCAAGATCAGGCGACCTTCATGCGTGATCAAGATCA
GGCGGCCTTCATGCAGGTGACATGCTCAAGTTCGACTATGAGTGATCTATGGTGGCGAGC
GCCGTCCTTTTTTTGTATGCCGACAGGTGTGCTGGCATGACCACGGGGCCGCGATGACGT
GGTCTAACTCAAGTCCCACCCCTTTTTTATGTGCTGACATGTGCGCCTGCCGCTGGCGAG
TGCGCCAACATGAACTGTGTGGTGATATTTTTTAAAACCGGCATTGTGTGCCGGCGCTGG
CATGATGATGACATGAGACATGGCCGCTGACATGATCTATGGCCGCGGGTCTTCTTCAAA
AATTATGTGCGGACGTGAAGTGGGTCGGCGCGTTGGACGCACCGCTGACCCAAATCTAAA
ACAGGACGGACGCCGGGCGAATGGCCGACCCAAACGAACAAAAACGCCGTCAATTTGGGT
CGGTCCGTTGGAGTTGCTATGATGGCTAAAAGAAATGACTTATTTTTACATACACAATTT
GTTGTACAGTCGGCCCTTCAATTCAACACGTGAATACCAAACCTGCCAAAAGGCAGCATC
CAGTCGTAAAAGTGCTGCCAACAAAAAGCGTAGTCATTGTCGAAAAGGGAGCACGGTACT
ACCAAACTCTCCGTCCGTCAGTCGAATGAATCAAGTACGTACACACGAGGTAGTTAGTTA
ATTTGCTCATGGGCGCATCACATCACCCGTTAATTTAGCTATTTATCACCTCTCGACGCT
AAAAATGAAGAAGCTATTATCACCTCTCTCTTGGATGGCACGCTTAATAAATATACTCCC
TCCGTCCCAAAATAACTGTCTTTGTACTAACTCTAGTACAAAATCACATCTATTTTGGTC
ACATCTAAATTTTATATAAGTTAAATTTTATATAAGTTAGCACTCCAACGGACAGTTTCT
TTTATATAAGTTAAATTGATGACCTAGATACACGCGCGTGTCTTGTAAAACACAGTTGTA
AATTGAAAGAAGAGCACCGCACGCGTGAGCGCAGGAGGAGACCAAAGGATGATGATGATC
GTCACACCACCATCACCATCATCATCACCATCGTCTTCGTCGTCGACCCAGGCGGCCTGA
CCCTCCCTTCAATCCAACTCCAGCTCCAGCTCCACCTCCACCTCCACACAAATCCTATCC
ACCATTACCCACCCAACGCACCACCACATCAAGAAACCCCCGCTAATCAGAGATCCACTT
GGATTCCTTTCCTTACTTTTTTGTCCCCAGCGCGACCCAGATTAGAATACAAGCCCCGCT
CCGCTGTGGATTTGGACCACGCGGCCGCATGCAGCGCCCAAATCACCTCCCCTCCCCGTC
CCAGCAATCTCCAATGGCGAGCCAGCAGAGCAGAAATCAATCCTAAATTAGCGTCCCGCC
ACCAAGAACTCCACTACCAGGATCCAATCATCCCAGGCATTTGGCCCACTCCACCACCAC
CACCCAGGAAATCCCAAGAAAGCTCGCACCGCCGGGCCAAATCGGCCCTACGCCGCACCA
GATTACTGGCCGCACCGTAATAATTCCCTGAGAAGAAGAAGGGGAGCTCGGGCGGAAAAG
CAATGACGGAGGTGGCGCTGTTCCGGGGCCCGACCAACCTCGCTTCGCCCGCAAGCCGCG
GCTCCTCCTCCTCCTCCTCCACCTCCCTGCGCTATTTAGCCGATAGCGACGTGCTCCAGA
GAGGCACCACCAGCAGCGCCCAGGGCCCTGCAGGATCCGCGGAGCGACAGGTGGAAGGAT
CGGAGGAGGAGGAGGAGCGCTGGTCCTTCTTGGCGCTGCTTCTCGAGCTGCTAAGGAAGT
CGCTGCTCCGGTGTAGGGCGGAGGACGGCGGCGAAGGCCACGGCCAGGGCGGGATGGAGA
TTGGGCTGCCCACGGATGTGCAGCACGTGGCGCACGTCACGTTCGACAGGTTCCATGGAT
TCCTCGGGCTTCCCGTCGAGTTCGAGCCCGAGGTGCCCCGCCGCGCTCCCAGTGCCAGGT
CCGTCACTCTCTCTGTCTCTTCTCACGTTTCTTCACCACAAGCTCCGAAAACATTCTTCT
ATTTTTAAACTCAAAATGTTTCTGCATATTCAGTATCATCCAGTTCCCACTGTTATTTTT
TGAAGTAGTTGTCACTTTACAACATTTTGATTAGATGCTAGTAGTAATGTTTGCCTATTT
TGGTTGTGGTTTTAATCGGGATAAAGAGATGGTACTTTGGCTGGAATTGCAACCTCTGTT
TGCTTTGGTCTGAGGCTTGCTAGACAGATAAATTCAGGTGGAATTTATATTTCACTTCAG
TTATGTGTATATTAATATGATGCCAACAAACACACACAACCGGGTTAGGTGCCCTCCGTA
GACTTCTTCCCCCTTTGCTGGTACTTGGCTGCCTGAGCTGGAGTTGATGTATGGTAGATA
AACTGTTTATGAATTATGATGATGGGCACGCTTTGGACCACCACTCTGTCCACAAATAGT
TTGTGCAGAGTTTCCCCCCTGTTTCATAGATAATTGGCCAATCACGGCTCTCGATGCCTG
TTATGGATAGAGTTGCATGGTTTTTCTGTAACTGGTTACTAATAAAATCAAGAAAGATGA
AATCGATACCTACAACTTTAATGAGGCTCAAAATGGAACAGAACACCTGCAACGGAATCT
TCGTTAATAAGTAAAGAAATAAACAGACAGTGTTAAATTTGAAATTTACAGAGCTTCTGC
ATTTAGTTATGGCAGTCATTCTGTCTACTTTAATGTTCTCGTCAACTCAAATCATGTTTT
GGCTTGTAAGCAAACCAACCAAATAAACATTTTCTGCCCAACATCCATGTGTTATAAAGT
GTATGGTTATTTTAATGAAAATCAAAAGGTAGTAGTACTTAGTTGGCACACTCATGCCAT
TTATTAAGTCCAACCTCTTGTTGGATCAGCTCAGCTGTATCACCTCTTGCTTTGTTTGGT
AAAAGTGCTTATGCTTGCTATACAAATATTAAACTACTAACGTATTTTTCATTCAGTGCA
AGACGTACTCGATGGCGCCTGTATTACTGCATCCCCGTTCTTTAATTTCTGTAGCACAGT
TGCACGCGCATTACCTGGCATGCTAATGACCCCTTTTAAGGAACACTGGATACCTGTTGG
AATTCAGTTGATTGAACTAGGAATATCAAGAAGTAGATTATTGCACTCTAAGTCATGGTG
TTAGATCAAAACAAGAACTGCTGGGAATTTCATGATTCACTATGGACATGTTTTTTCGTG
ATTAGATGATTCCATCACCTTGCATATTATCATTTGTCTGCATCTGTTTATTGTGTTTTG
CCAACTTTAGTGACTTGAGTAACTTTAGTGGTCCTCTCAAGGTTATACTAGAAAAGCAGA
AAGAATAAGGAACACACATAGGTATTATATTTATTGTTTGATCTTGGGCATTCCAGGATG
TGGTTATTATTTCTAGGCAATCTAAAAAGAATAGGCTAAATGGTTCTCTGTACAAGGATG
GAATCATTTTGCCTCGAAAAAAGATAAAGTGGCGCAAACACCTAGAACCCATCTTCATAG
TTCAAACTGGATTGCAATCAACAAAACTGGAGCATAGGAGTTGTGCTCATTAAATAGTTG
GGAAACTTCTGGAATGTGCAAAGATTTTGAAAGAAAATGGAAAACTGTTTCCTGGATGGT
TTGCGCACTTGAGTTAGTAAACCAGCACCTAATGATGATGTGAACTGTGCTCACATCTTT
ATGGTCATGCCAATTTTGTAAGCATGCAACAATATGTAGAGGTCCCGCATAACTTGGGTG
AATTCGATGTTCTTGCAGACCGTCTTAATTGCTGAAATACGGTCCGCCGAAAATGCCTTG
ACTTGTCTTCAAAATAAAAAAAAACTGAAATATGCCTTGACCTAAGTGGCTATGTGCTCT
TTACTTTTGTAAGTAAGGTGTATTTTGGAGCATTGTGTATGATTGGGTCCAGTTCATGTT
TCCTTGTGTTGTTGGTGTTCTTCAGCTGATTCAAACTTCAAATGCAGTGCTAGTGTCTTT
GGCGTTTCAACACAATCAATGCAGTGTTCATATGATTCCAGAGGAAACAGTGTTCCAACG
ATTCTCTTGATGATGCAAAGACGTCTTTATGAACAAGGCGGTCTTCGGGTATGAAGTTTT
ATCATTTTAATCGACTCTAAGTTGCTTAAGCATCCTGTAGCTTTTCCTGAGTGCTGACCA
CATTCATGTTGTTTTGTTTTTTTACTTTGCAGGCAGAAGGTATTTTTCGTATAAATGCGG
AGAATAGCCAGGAAGAGTTTGTGCGAGATCACTTAAATAGTGGATCTGTGCCGGATGGCA
TTGATGTTCACTGTTTGGCGGGTCTAATCAAAGTAAGCTTCCTTCTGTCATGTAGATTTA
TGCCATTCCGTTGACAGAAGCACTCACATATTTATTATTGATTATGCTTATCTTCAATAG
TCGGATTCTATCACAACACCTGTCAGTCCAGATTTTCTTTCTAGTGGAAACAAGTCTTCT
TTTTCAAAGGGATACAAAAGCTATTACTCTTCTGTGCAACAAATTTATGTTGCAGAATCT
AATACTGCTTTCCAGTGCAGTTATGTGGTGTTATTAACTGATTTGACACCACAATTTTGT
GTCCCTGAGTTAGTCAGCTTTGTTTTGCTAAATAGCACTCTTGGTGACAAAAATTATACT
CATTGCATATATTTTCAATTGTTTAGGCCTGGTTTAGGGAACTGCCGAGTGGGGTGCTGG
ATTCTATCCCACCTGAACAGGTGATGCAGTGCCAATCTGAAGAGGACTGTGCTCGGGTTG
CCAAATGCCTTCCACCAACTGAATCAGCCTTACTTGACTGGGCTGTTAATTTGATGGCTG
ATGTTGTCCAAGAAGAACAGATAAACAAGATGAGCGATCGCAATGTTGCTATGGTTTTCG
CACCAAATATGACCCAGGTAACGCGTTGTCCTAACAGCAAAGTAGCAACAATCATTTAGG
TGGATACTAACTCTTGCGCACATGTAACACAGATGGCAGACCCTTTGACTGCACTCATGT
ATGCGGTGCAAGTGATGAATTTCCTCAAGATGCTAATACAGAAGACCCTCAAGGATAGAG
AGGAGTCCAACCTGGAAGAAGCCTCTTTGCCACAGAAGGACCCATCTGACGAAAACGGCC
ATCAGAACCCCAGTCTCCCCGTTAATCCTCAACCTGAAGAAATATCCAGGCGCCCCTCTT
TCGTCAGCGAGGAGCCCCTTGTGTACAGTCCTACACACAGTGCTGAAGACAAGCCTCCTG
CGGAAGGCGATTCCATAGCTTCCATTGTCCAGACAAGCAATATTCGGTCAAGCGTGGAGG
GCTCCCCTAGTTGCTCGCAGGCCGCTATTGCCGCTTCGTCGGCCATTGCTGATGCTTCCT
GTGCTACAGCAGCCAACTTACTTCCAAGCAGAGGGAACCGAAGCATGAATAGCAGGAGGA
CTAGAAAGGGCAAGCGGCAGTGCGGAACGCCCACCGCTCCTCCAGCTGAGAAATCGAGGG
GCGCGAGCATCGTGAGCCGGATAAACTCCAAGGTCGAACGGATCGAAGCGTGGAGGTAGA
AACCCCGGTGCCACTGCCGTTGTTGTTGTGTAATAGATGACTGACCCAGTGTTGTTTCCT
TGCACATTTTGAATTTTCGACGCGCTTATCATTTTGTGTTTGGATCATCATCATGTTTAT
TTGAGCCTGCCTTCACTAACTTATATGTATCTTGATTATGAGTAAATTTGGGGCCTTTCC
TTCCTTTGTAAGTACATGCATTGCTCCAGTCCCTGGACTGAGAAGTTTCTGGACGTCCTC
AACATGTGTTATTCTCATCCTGACCTTTCTGAAGTGAGGTCTCAGCCATGGTATGCTGTA
TGCATGATGTTCCCTCATCGCATCAGATAGCTTTATTCTGCCTCCCGGCCTTCATTCTTT
CCGTTTGCTGAATCTGTCCTGAGATTTTCAAGAAAAGAAGTTATTCTAACTTTTTCTCCT
TCTTAGAATCCACCATCAACTCTTTTCCAGTTTTCATGGAGAAAATGAAATTTCTTAAAC
AGAAACTCACCGCAAGAGGAATTGCAATGCATCACCTCGCTTTCTGCGTGTTGAGAACAG
ATTCCTGTCTCCAGGCGCACTTGACACCAGTGCGATGCTCAGTGACAAGTGCATCACTGG
TCGGGAGAAAATCATCCCATTTTCTCCAGGGTTTTAAATTTTAACCATCTCGGAATGTGC
GAATTCGAGCCGTTCCTGCGCCAGTTGTAACCGGAATCCATTCGCCACAAGAGGAATGCC
AACCTTATCGGAAATTCGGTGATGCCAGAGCAAGATCACCATCAAATTTGTGCGAGCTGC
AAATGCAAATGCAATGCTGCATTGGCTCTACCTGCAGATTTCCATTTCTCTGACATGTTG
AGCAGGCCAGTGCTGAAGAACAGTGAGCATTTCCATTTTCCTCCCAAGTTGCAGCTAGGA
GTATATACCGGCTCCACTTGTGAAACGAAAAGCCCAGAAAACAAGAAACAATTTTCCTAA
TTCCGATTCGACAGCCACATAAATGCCTCCGCCTTTCTTGGCCTCTCCTTTTCTCTTCCT
ATATATACCTCTCTTCCTCGGAGATTATTTGAGCCAAAATTCGACAGTCACAAAAAATAC
TGCAGCCGTTTACTACATCTGACTGAGGAGCCCTTGTTGGATTGGATGGCGCACATGGCG
ACGGCTGTTGGGGACGGCGCGCTGCGGCGGCTGTTCGAGAAGCCGTTGCCGGAGAACCCG
ACGCTGCTGGAGGTGCTGTCGGCCTGCACCAACCACGCCCACCACAAGAAGCAGCTGCCG
GCCGTGGACCCGGCGTCTTTCACGGAGATCTTCGGTGAGCTCCACTTCCACGAGAAGCCC
GACGGCGCCGCCGCCCGGCCCGTCCTGCCGCGGGTGCCACTCCCAGACGCACGCGCTACG
GCGGCGTCGTGGCTCGACGCCGCTGATCAGCAGTCCGAGAAGAGCAAGGACGACTCCTCG
CTGGACGCGCTCCTCAGGCCGAAGCCCGCGGGCGCCGCGGCCTCCCCCGGCGGCGTCAGG
AGGAGCGCGAGCTTCTGCCTGAAGAAGAGCTCGGCGTCGCTGCTGCTGTGCACGGAGGGG
CTCGGGTCCGAGAGCACGGTGGACTCGGACGACATGGTCAGGGACGACGGCGCCGACGCG
GCCGCCGCCCTCCGCGGGAGGGAGAGGGAGGAGGCAACGCTGAGGGACGCCGCCGCCGCG
GCGGAGCCGGGGCTGGGGGAGTCCCCGCCGTCGTTCCCACCGCCGATACGGTCGATCGGG
CGCGGCGGGAAGCCGTGCGTGTGCTTCCGGACGTTCCGCGCGGAGGGGCGGTTCGTGCTG
ACGCAGGTGGTGATTCCTGGGAAGGAGCTGCTGCACGCGTCCCGTGAGGGCGGCCGGCTC
AGGCTCCGGTTCGCCAACCCTGCCTCCGCCGACGAGGAGCTGGAGCTGGGAGATCAACAA
GATGACGAGCGCGAAGCCGGCGGGGCATGCATCGACGCCTGCGCTTAGCTAATTACTCCA
TGCAAGTGTGCTTCAACCTATTGGGTTTATATTACACGCATAATCCGAAGCTGATGACGA
GCTGCAGCAACTGCTACTAGATGATGCACAGCGCCTTATTTCTAAATATAAGTCTTTGAA
GGGGTTTGATTAAAGGGCTACGTACGAAGCAAAATAAGTGAATCTATAGTCTAAAATATG
TCTATATACAGCCGTATGTATTTTCCCTAATGAAATATCTTAAAAGACTTATATTTCGAA
ACGGAGGGAGTAGATGATGCCCTGCTACGGAACTCAAGCCAATAAAAT