morexGenes - Barley RNA-seq Database

Contig contig_49330
Source Contig contig_49330
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49330 (6865 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_49330

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64798	5	1846 bp	MLOC_64798.2	Available	Available	LOC_Os08g35190.1, FRAME:-3, EVALUE:8e-31, 13108.m03688 protein auxin-repressed protein, putative, expressed
CDS Structure of MLOC_64798

Contig Sequence (6865 bp)

>contig_49330 6865 assembly3_WGSMorex_rbca.fasta
GGCCCAGTCGGAGTAGTTCGTGCGCGTGAGCATCATCGGGGGCGCACCACCCCCGCCTCC
GTGCACGACGCGCTCGATGACGCGCACCCCCGACCCCTCCTCTGTTGAGAGGCGAGCCAT
GGATCTCTCCACTCCCGGTGTCACTTCGCCGGCCTCGTCCTTGTCCTCCCACTTCTTGTT
CTTCTCGTCGTCGCTGGGGGTCATCTCTCCGGCGGATCGGACACCGCCGGTGCCTAGGCT
GGATCGAACACCACCTAGCTCTGATGCCACTTGTAGTTGCCACCCGCCTGCGATCGGACG
TGAGAGGGAGGAAGAACCGAGAGGTAGACGATGAAAGACACTTTCAGAGACGAGGGTTTT
GCGCTGCGTTAACTGTGTGCAGATTTTCTCTGATTTATGTTATTCATAGGCTCCTCCAAC
GGCAGCCGAAAGAACAGGTAAAACCAGCCGATTCTCTTGCCGACCTACTGGTCATGCCAT
CCCACGACGTCGGACAGAGATCGAGCCACTACTTTGCCCGCAAGTGTCGTCGAGATCATG
CCATCCCATGACCAGAAACTTGAGAGCGAATCTAGCTAACTAACTAACTGAAACTAGATA
CTGCCTACTGAAACTACTGACCGAACGTGCACACAATACATGCTGTCGGCTCTTATTCAG
AAAGCAAACACTTGCAGATAATCTTCGTGCAAATGATTAGCTAACATTTCCCCTTAAATT
TAGAGTTTTGTAACTCAACAGGCGAAACATACGGTTTGGGGGAGGCTTGGGCTCCTAGCC
GCGCTCCCAGCCAGCCGATCACATGAGAAGAAGATAGAGAGAGATATAAGATTTCCTTTT
TTGCATACACATGGTGTGCCTAGTAGAAAAGGATAGAAAAGAGAAAAAGGACAGAGATTG
ATCGGTAGGGTTTGTGCATGTAAAAATAGCGTCGGTCGCTCCAAGAGCCCTTCGGGGGGC
AGGGTTTAGCCTGGGTCACCGCCGTTGCTGCATCTGGAGCTCCCGCTGCCGAGGAGGAGG
ACGAGAAAGGAGGAGTACTTTCGGAGCTTGCCGAGGTCGCGGTCCGGCCGCAGGCCGGCG
ACCGTGTCGTCCGAGAGCTGGTCGAGGAGGCCCATCAGCCCATGCGATGCGACTGGTTCC
GCGTACCTATGCGTGTCGCCGTCGTCTTTCTTTCTTGGCTGGGAGCTTCCGGCCTTCGGA
GCTGCCAGTGGCCGCGGCCGAGAGGTTCTTTATGGAGCGGAGCTGGACTGCGCTGATTCG
CTCGGCAGGACTCGGCGGTATCTTTGCCGACGTCGTGGAGTGCTGCGGCTCTGCATTTGA
TGGGGGTTTTGTGTCGACCATCGCCGGCTACCATGGTCATCAGCCATCTGCGTCGTACTG
TCTCGAGCAGGTGGGGTCTACGCCTTCATGGCTGGCCTGGTTTGGTTTTCGCTGAGGGAA
AACGAAAGGCTCTTTTAGGTTCCGGGAATGAAACTCTGCATCTCGGTGATGTGGATTTCA
TTTTTTATTGCTGGAGCTTTTAACCTGACAAGCAGGTCATATAATAAGAACAAACCAGAT
ACAGTAAGTGGCGCATCTTTTTTAGCTGAATTATTGCTATTGCTTTGGGTGCCTTGGTGG
AAACCTCTCTTAGTGGTATGAAATGTACCTGGTTATCATACAACCAGCAAGTTCCCACTT
TTTAGTAGTTGGATAGAGTATTGATTTTCCCATTATTGCCATGATCGAGTATTTTAAAAA
TGTTAAACATGTAATTCAAAAATATTGAATAAGTATTAAAATGTTGAACTAGTAGTTAAA
TGTTTAATAAGCGATCGGACAATGTTGACCGTGTTTACAAAAAATGTTGATCATTTATTA
ATTTTTTGACATATACAAAAATGTAGAGCAAAAACAAAAACAAACATAAGAAAATTAAAA
AATGGAGAACAATTAAGAAAACAAAACAGAACATGGAGAAGAAAAAGAAAAGCAAACAAA
AAATGAATTATGTAGAGAAGGAACATAATAACCAAATAAAAATAACATGCGTATGGAAGG
AAAAAGAAAAAAATCCCGAGAAAATTGGCTGGAGTAGAGTCAAGTATTTGGTCACCTAGC
TCTTAGCATGAAAAGAACTTGAGTGGAGTGCTTAGCGCGGCTTATGAGGCGAGGGGAAAA
AACACTTCAGCAATAGTTATTACTCTAAATCGCTTAAAGCGATAAATAGTGATGATGATT
TAGTATTTAGATACATCCGCATCTGGACAAAGCTAAGACAAGTAATGTGAATCGAAGGGA
GTAATGATTTAGAAAACCCAATACTTTTATAAAAATAAGAATTTTTGAAATGCAGATAAA
TAATAAAAAACATGAATTAAAAAAAGAGAACATCAAAAGGAATAATTAAAAAATTGTTCA
GAAACCAGAAGAAAAGGAAATAAAATTGAAAATATTACCAGAAGAAAAATGTCTGACACG
GCAAAACTAGTAAATATAACATGTCCTGAGGAAAATTACAACAATATAGGTAGAAAAATT
GCTCAATGCCAAGCGAAGGAAAGCAACTTTCGCCAAGGCCCAGAGGATTTGATGAGTTTA
GTTGAATATAAGTGAAGAATACCAGTGTGTATGATTTGTACGAAAAGACTACACTTCTTC
ACTATAAGTGAAGAATAGGAAGGACCACCTTGCGACTAAATGTCGAGAAATCACACATCC
TTCTGCCTATAATGGTTCGGCCTATTCTTCCAGTTTTTTGTAATCCTCTCGCGGTCGTGC
CCCACCGGTTCACTTGAATTATTCGTCCTATTTTTATTTCCCGATTAGGTTTATATTATT
TTATTTTATTATTGATTTTTTATTGTTTATTTAGTTTTTTAGTTTTCTAATTTTTATTTT
GCCTTTTTAATTCTTTTACAAATGTCCACAAAGTTTTAAGTGTCCATGGTTTCTTAGAAT
ATTCATGAAAGTAGTGAAAATGGTCACAACTCTTAGAAATGTTCAAAAACAATTCAGCTT
TCTTAAAATATACATAACTGTTTTTAATGTTCACACTACAAACTGTTCTTGTGATTAAAA
ATATTTAGATGTTTTCACTGTGAGGAACAACCATATTGCTTTTTGATCTTTCTCAAGCAC
TTTCGTCTGGTCAACCATAAGCTCGGTAGATGACAGCTTATTTTACCGTTCACCGATAAG
CCCCAAAAGTCCTGCCCCTTGACTAGCTAAGGGGATATATTCCATTGGTCGACATAATTT
AGGGTTCAAATTTATGGTGATTTCTACTCAGTTGCAGTACACATGGACAATGATAGTAGG
AAAAGAAATTATGATCGAACACTTGCATTGCATCCTCATTTCAACGCTCATCTCCTCCAC
AAACAAAAAGGCGCCTCCTGAAGGCAACGCATCTCGATCGCGTCCGAGCTTTAAAGCCTA
CTACTGCTGATCACATCATATACTTTGGCATCCCGAAAGGGCGCACAACTACATGATAGA
AGAAGAAAAGACAGTGCACCTAGTTAACACAACGATTACACAATAGCAGGTATGCATATG
ACAGGACGAACACACGGTCTCAAACACGCCTGCTACCTCGTCTTCTTCTTCGATCGATTA
TTTCGCACTCGGGATCGTGCTACTTCACCGGTCCAATGAACTGATCACCACCCTACAAGC
ACATCGATCCAGAGTTAGAACGGAACCACCTACCAAGATGACCCTTCTGCCATATGTTCT
TATCTTGTATTTTTCTGAAGAATGATTGGTCTGACGTAGGTAGTATTTGTGTATGGATCA
TCGTTGGTATGGTGCAAAGCATGGGGTGAGAGTGAAGGTGACGTTTAAACGCACCAGTCG
TACACGGTGGGGCTCCTGGGCCCGACGGTGGCCTCCGCCCGGACGACGTCGACGTTGGCC
ATGTTGGACTTCCGGCGGAACGCCCTCCAGCCCTCCACCCTCGGCGTGCTACTGCTACCT
GCTCCATAAAGTTTCAGACAAAACAGCAAACTAATGAGGAGGAATTTCAGGTTAAACAGC
AGATTCCCCGACATCTCTGCGTCTGCGACAGTGCTCTGCTCACAGATCTGATTCTGTAGC
TAAATCAAACTCGAGCATCGAGGGACAAGCCACGACCGATTGAGCAAAAGGTCCATGTTT
TCTTGCCCCATTTTCATGGAAGAAGGACGACAGATCGCGGATCCAATATATAAAAGCGAC
GAGCTTCGATCAGCGGCTCTGAGCTACACAGAGCCACAGACCGATCCTAACTAAAGACTG
GAATCACAAGGAGAGGCCAAGAAACAGAGGAGGAGGAAGCCCACCTGCTGCGAACGGGGA
CTCCGGCGCGCTGGCCGGAGACGACGGCACGGAGCTTGACTCGCCGGACGGGACCGAGAG
AGACGGCGGCCGGGCGATGGTGATGCTGCGGGTCACCTTGGGCGCGACATCCGCTGCCAC
CGCGGTCGAGGGCGAGAAGGAGGAATACCTGCGGAGCCTGCCGAGGCCGTGGTCCGGCCG
CGGGCCGGCGACCGTCTCGTCCCAGAGCTGGTCGAGGAGCCCCATGCCCCGCACAACAAG
CGACCGGTTCCGTTCCGTCCACCTACGCGTGTCGCCGTCGTCGCTCCTTCTTGGTTGGGA
ACCTTAGGGGGACACAGAGGGAGGCAGGGCGACCTTCGGGGGCTCCGAGAGGCCGCGGCC
GAGAGGTTCTTTATAGAGGTGGGTGAGGGCCGGATGAATAATACAGGCGTGCGCTGATTT
GCTCGCCGGGATTCGGATCTTCGCTGGCGACGCCGGGTGCTGCCGCTCCTGCAGCATGCA
TCTGACGGGTCGGGGACAAGGCTACTACCGTGGCCATCAGCCATCTGTGTCGTCGTCTCC
GGCAGTGGGGTCTAGTTAGTCCTTGATGGCCGGGGCTGGTTTGGTTTGCGGAGGGAAAAC
GAAAGGCGCGCGCTCCTAAACGAGATGCCGAGAGTTGAAATCTCTTGCATCGTGGTGATG
TCGACTCGTTTCTTTGAGGATGTGATCGGCCTTCCTTTCCACGGCTGAAATGGAGGATGC
GGATAACACCGAAGGAAGAAACGACGTTGAGTGGTCTGGTGTTGAGTTGCAATGGTCATC
GATGTTGCTCTAATAATTAATAATCATGCTGGTGCAAAAATAGATCAACGCGGACGGCCC
CGGACCGCCGGCTTCTCAATCATCTTTTCTTTTTTAATGTGATTGAAAAGCAGAATGGTG
AATGTTTTCTTATTAGACTGCTTGTAAACAATGCATTTGATGGGTTTACATGGAATTTGG
TGGTTGTTTAGGGTGATGCCCGGTGCACATCGCGTAGGGAAATCATAATTCTGAGTTGGA
CGCGCGCATCTCATAATTCTCAGAAGATTTTTTTTTCTTCTTCTCAAAAGGGTAAATACC
CTCGGTCTTTTCATCAAAATAATGCATGCGGACATATTATTAAACCAAGGAGTCGGCAAA
TACGTAGTTCGGTACAAGCTTGGAAGATAGCGTGGAAACAAAATAATAATTGCCACAGAT
GACATAAATAGGACAAGATGACTAAACACCTATCATATTATTGGACCTCAATCCAAACCG
ATTGTAACTATCCCGTGCTACCATCTCTCAGCGGTTGCATCCGTAAGTGCCGGTGTCAAA
ACCTGCACATCTCGTGTAGGGGGGTCTCAAGCTATGGATCTTGGATCAATGGAGAACACG
GAACACAAGGATAATATTTTACTCAGGTTCGGGCCCTCTCGAAGAGGTAAAACACTATGT
CCTGCTTAAATATATTGATGTGCGTATGACGATTACAGAGTCGATCTACCGAGAGATCAG
ATGAACTAAACCCTAGATGAGTAGGATGATGGTTCTGTCCTCTATGAACTAAAACCCTCC
AGTTTATATAGACACCGGGGGTACCTAGGGTTACACATGGTCGGTTGCCATGAGGGAGTA
AACTTGCCGATTACGCCATCCTGACTTGGAGGACACATCAAGGCACCGAAGGTTTCCTTT
CTAAACACGGAGGCATCTTATAGCTCGGCCTTCAAGTAATGGTTACACAGCGGCCCACCT
GTCCAACCCATAAAAGATAGGACGGCGGTCCGAGGGCCACTTGATCTCAGACTCCCTGAG
TAGCCCCTGAACTAGGCACCAATGTCGGGGTATTATTCCCTAGTAGCTTCACACGTCCAA
AGTCTCCGGGTTCCGGGGCGAGTTCTTCTATTCTCCTATGTCCGGCTGTAAGTAGTTCGG
CCACCGGTGAATTCTTGATTGACCAAGCATTATGGGGCCGACAATATCAACTTTCTCGCT
TAAGGTTAATGACACCTCTCTATTCCCGCGTGCCGACGGGAGGCAAGCGGTCCAGTAGTC
TTTTACAGAAATGCCCTCTGCGGGTCAAAGGAAAAATGCCCATTAAATTGGCAGGACGTG
CTGTGAGCAACGCATCTTGTTCCCAACCCTTGAGAGAGCAAAAACCAGGAAGCTCGAAGA
CATGTCAAGCTTGTGAGGCTCCTCCTCACGCCCTCATGGCCCCCTCCCAGACGACCGGGC
GAGTTGTTAAGTCTCCTGTCTTCGATTGAGCGACCTCAAAACGCAAGGATATCTCCCTGC
TTCAGATCTAGCTTCTAACCGCCCCTGGTTAACTTTTGCAAATGGGAAGGCTTTTGCAGA
GAACTTCCCTGCTCCGTGCAAGGAAGAGAAAGTATGCTTTGTGCCCTTCCTCTTACGAGG
CTTGGGCTTCCTGATTCACCCCTTCCTGAGTTGCTTGCTAGAGTTTTACGGGATCCAACT
GTTGGAAATATGCCCTANNNNNNNNNNNNNNNNNNNNNNNATCATATTTCCTTGTTCAAG
ATAATAGTCTATTGTTCATGCTATA