morexGenes - Barley RNA-seq Database

Contig contig_492812

Source Contig contig_492812

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_492812 (1579 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_492812

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64754	1	1280 bp	MLOC_64754.1	Available	Available	LOC_Os03g43890.1, FRAME:+2, EVALUE:4e-67, 13103.m04721 protein WD domain, G-beta repeat domain containing protein, expressed

CDS Structure of MLOC_64754

Contig Sequence (1579 bp)

>contig_492812 1579 assembly3_WGSMorex_rbca.fasta
TTTCATCTCCATAAGAGTGGCTGGGTTTTTCACGTTGGCTTGCCACGCCTATCACAACCC
TCCTCCTNNNNNNNGGCTTGGGACCGGCTATGCTGAGACAACTTATGCCATTGTTAGAAC
AAAATAGATAACCTGAGATATACTTGTATATCTCTAGAACAATTGTTTTGGTGAAGAAGC
TTTTAGTGCATAAAGATAACATGCCATGTACCCTTCTTGCTATTTATTTTGATTTTGATG
GTGCCAAAAATCACATTTGGGAGGGATATTTTTTTGTCTTTTGCAGGTGCAAATAGTTCA
ACAGATAAATCATGATGGAGAAGTTAATCGAGCTCGATATATGCCCCAAAATTCATTTAT
TATCGCTACCAAGACAGTCAGTGCAGAAGTGTATGTCTTTGATTATAGCAAGCACCCATC
AAAGCCTCCACTAGATGGCGCGTGCAATCCTGACTTAAGGCTGAAGGGACACAACTCTGA
AGGATATGGCCTGTCTTGGAGTGTCTTTAAAGAGGGTCATTTGCTGAGCGGATCAGATGA
TGCTCAAATTTGCTTATGGGATATCACAGCAAATGGTAAAAATAAAACTCTTGACGCATA
CCAGATTTTTAAGGTATGGCTCATGATTCTCTCTCCATTTGAGCGCATTAACACAGAGCC
TTGTTTATAACATTGGTTAAAGCTTTCCTCATGACATGCTGTTCTGATGGCATCTTTCTC
CGAATGGGTTTGTGCTAGTCATATCTGGAATGTATCCTTGGTGAAATAGTACGCAGAATA
TATTCCTGATGGTTTACGTGAAGATTATGGTATACATGAGGAAAAACTGCAGCCTAATTA
CAATACAGTTTCATTTACACCCTCCTAATCAAAACTATTCAAATTAGGTCCAAAAGCAGT
TTTAATGGGTGGGTAGGGACATTGCTCTGGCACTAGGTGTAGAGGGTGCAAACTATTTGG
TATTGACATTTGGGGTGCAAATTAAGTCCCTGCAATAGTTAAGGCTAACAATGGTAGACT
TTTTCCCTCTATTATTATCCAGTGTTGACACTTGATCATAGTTATGAGAAGGTTTTCATT
CTCCTTCATAGCACATTGGACAGCTATTTGTTCATGTATTTATACTGAAGAATAGAATGA
TTGTTTGTATTTCACACTCAGACATGGTTCTTTTAGTGTCATGTAATCTAAGAACGTCAA
TTCCATCCTTTTGGTTCTCTAGCTGTTAGTGCCGCATGTCATGGTCAATAGTCAGTTAAG
CATCATAAGTCATGACAATAATACTGTTTAATGCTGGTTGTGTTGAATATTTCAACAAGT
GATATTACTGATCTGGTATTTGTGCTGGTTTTGTTTTGAAGTTTATCGTTGTAAGAAGCT
GAGTTCAACTCTTGCTTGAACTTCTGCTTTGCAGAATTCAGGGCCATGCAAAATTCAGTA
CTACTCCCTCTGTTCCTAAATATAGGTCTTTGTAGAGATTCCACTATGGACTACATTCGG
AGCAAAATAAGTGAATCTACACTCTAAAATATGTCCATATACATCCGTATGTAGTCCGTA
GTGAAATCTTTAGAAAGAC