morexGenes - Barley RNA-seq Database

Contig contig_49243

Source Contig contig_49243

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_49243 (4512 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_49243

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64726	1	348 bp	None	Available	Available	None
MLOC_64724	2	926 bp	AK353634	Available	Available	None
MLOC_64725	1	377 bp	MLOC_64725.1	Available	Available	None

CDS Structure of MLOC_64726

CDS Structure of MLOC_64724

CDS Structure of MLOC_64725

Contig Sequence (4512 bp)

>contig_49243 4512 assembly3_WGSMorex_rbca.fasta
GGCGCCGACGGCGGCCGCGCCGAGGGACTCGTGGGCACCCCCCACTACGTCGCGCCCGAG
GTTGTGTCCGGCGGCGACTACGGCGAGAAGGCGGACGTGTGGAGCGCGGGCGTGGTGATG
TACGTGCTGCTCTCCGGCGGCGCCCTCCCCTTCGGCGGTGAGACGGCGAAGGACGTGCTC
TCGGCCGTGATGCGGGGCAGCGTTCGGTTCCCTCCGAGGCTGTTCTCCGGCGTGTCTCCG
GCCGCCAAGGACCTGATGAGGCGGATGATGTGCCGCGACGAGTGGAGACGCTTCTCCGCC
GAGCAAGTCCTCCGTAAGCACGCGCTAATCCCTGGAAAATTCATCTTGTCTTTGAACCGG
AAAGATCGTGTCCTCCGTCAGTTCTTCATTTGAGGTTAGATCCAGGAACTAACATGTGAT
CGTGTTTGTAATGCAGGCCACCCGTGGATCGTGAGCGGCGGAGGAGCCCGAGCGATGGAG
CAGCCAACCTGATGAACGGCCGCCGGATCCGAGACTTCGCCAGAGCAGATCGAGGCAGAT
TTAGAGCGTGCCGCCCGTGGGACCCCGGCTCTGCAGAGAAGTAGAGAGATAGTCGGCGAT
CGAGACGCACCGGCCGACGGCGTCGATACGGTTTTTGTACAAAAGGCCGGGCGCGCAGAT
ACATACGCTAGTAGTATCGCGCTACGGCGGTAGATCGAGTGAAGAAGCAGTAGCAGCTAG
CTCCATCTTTATCTAGAGGGCGCCTTAATTTGTTTTCTCCTTGTTGTGTGCGGTGCTGCA
TGATGGATGATGATGCAGCAGCAGCAGGTTTTGTACTGTGTATATTCTAGTGTACGTCTT
GTACAAACTAATGGAGTCGGAATAAGATGAGCTATAGCCTAGCTCATGCTTTGCTTACCT
TTTAATAAGTTTATAATTCAATTGAAGCTTTGTCATGTACGTATGTGCCTTTCGGCCCCG
CCGTTTGAACGATATTCTAATACCCCTCGAAACAAAAGAACAATATTCTAATCGCTTTAG
GTAAACACTCCACTCGCCAAGTCGCAAGTTGCACAAAATCTTGAGTCAGCTACAGCTTAT
AGAGAAATAAACAAGGAGAAACGATCAGAGGTGCTACGTACTCCTATGACTTTGACCCGG
GGACGACACATGATGTAGGTAAGAGCAGAGAAAAAGCATGGAAATTGTATAGTCGCCCCT
CTGCAAACTCAAACTCTTTGGATCAAGCTCGAGTGTCTATTTCCCAAGGAGCAATCAACC
CAAAAGGAGGAGTAAAACTGCAACTCTCTCTTGTATCCGGACCTTCGACGGCCCGACGAA
AATGACCGCACATCCTACCTAGTGGCGTTTCTCTTGGCCTTTGCCGTGCCTTTTCTTCCG
TTGCACGACTCTCCACTTTCTCTGCAAGTACGTACAGCGTACAGTACGAGCAGTACAGCG
ACATGCCACGCATTTGGGGAAGCCGCCTCGTCGCCTCCGCCGGATCGTGGGCATATTCGC
CGGCCCTGCCGCGTCCTCGGACAGCTGTCGCCGCCCGCGGTTTCTTCGCCGTGAAACCGC
CTTCATCCGCAAGCGAAGAGAAGAGACCGGAATCCTGCGGAGGTGGATGTGTGGCAGCGA
AGCTCGCGCGGTACGGCGAACGTGGGCGGACGTACGTACGGGCCGGGGCCAACGTGGGCC
GCGCCTCCGCCTCGCACGCCCTTGACCTGTGCTATAAGCGGTTGTGGGGAGACGTGATAG
GCTCTCCCCCTTATTCCATCTCCCCCCTCCTTTCTTTCTGTGATGTGCCTCGCGTGTAAG
GCGGGGATTCGTTTGGCGCTTCCTCCATGTCGCCATCCTACGTCGCTGGAAGCATCAGTT
CTCCATTTGTTATGAGCGACCTTCTAGAATGTGTGCCAAATAATTTAGGTCATCGCAAAT
CATCCCGTGGTTGGATGGTTAGTGGACTTTTTCTGAATTTATTCCAGGTCTTTCGGCGAT
GTGTTTTCAGTGGGAGGAGACGTTCCCGTCAATAACAAAGGTGTTATTGGCGACTTCGTT
AATCCCAAGATGATGTGCCGGCTTAGTCTTTCGAATGTGTTCATAGAAAGAGGATGTGTG
TGCGTGCGTTCAAAGGGTAAGTGTACGTTCGTGTATGTAAACGACTTCGATTATACTATA
CTTAAAAGAAATTAGGTATCGATGCTCTGCTCGCATAGAAATGAAGAGATGACGGACCGG
ATGACCCAACTTGATTGACCGGCAGCGGGCGTGGGAGATACGTTGTGCTCATTGAGCTGA
ACCTGCCTTGACCTAGCCATCTCGATGGTGATTTCAAACTCTTAATTTCGAGAGTGATTA
GATATGCCTGAAAGATTCCCTGCAGTTAATGTAATCGGTTCTATTCTGGGTCTAGTGGCA
TTGCACCGCTAGTTAGGTCAACATGAGAGCATACAAAATTGACCATGGCTTCGCTCATCG
ATACCACTACTACTCCCTCCCATGAGTAGTACAAATGGCTTAATTTAAGAGCAAACGGTG
ATCTTTTAAGTGAAAAAAAGGCTGAATTCATGTGCTTAGTAGTACTCCCTCCCTCACAGT
TTAAAAGTACTCCCTCCCTCACAGTTTAAAAGTCTGACACGTATATCTAGATCATCAATT
TGACCAACTTAATGAGAAGCATATATTATAAAAAATGTATCATTAGAAACTTTAGATGTT
TTATTTTCTAATGATATAATTTTTATGTTAAATAATATATTTTATATAAGTTAAATTAAT
GATACGCGCATGTCTTATAAACTGTGACGGAAGGAGTATAAGAGATTGCATGTTACCCTG
GTCGCGTTGAAATAGGGATTCTTTGGATGACCCTTTTTTCTATTCTTTGAACTTATTCAT
AAGTCTAGAATTATTGACTCATAAATTAATGTATCCATCTCTTTCGCAAAATGGGCAGTT
TTCAAAGTAAGCATTCTCTGTACCAACTGAGGTCTGATAGGTCCAAATTAAAGTTGGACT
CACGTATCAATTCGATATGCATTCTCTAATTATACGTGTGAACAGACATCTACGCAAGCA
CACCAATTATGTACGCCAGGGGGATGAATATGATTGAAGAACAATCCAGCTAGTGGACTA
AGTTAGTGATCAACTTGGTTTCTTCAAGGAGAAGGCATGAAAAAGAGTATGATTGATTTT
TATTCTTTTTTAGTAGAAGAGTATGATTGATTTGATTGAGCAACTTCTCATCAGAAAATA
ATATGCTAGTTTTATACGGTATTTCAGTTAGCTACAAAGCTAGATGACCACAAACATAAT
AATATGCGAGAAATAATTGGACTAGATATACTATGTGCACTACATAAAATACGTCATCTA
CTTTAAACTATCAAAGGGAGCGACTATAGCTCAATCGGCTCGAAGTAATTATCTGTCAAG
TCGACATTCTTAGCCATTTGATTGACATCAATTCGCTGGTCTAATTCATCCAATTTGCAA
ACTATTTGTCTGGACGGCATGGCCCCCTTTAAGTGTAAATTCTTTGCATCTTTACTTCAT
CTTGTTTGTGGGGTGATCTAGAAGAAATGTAATGCACGCGTATTCAAGAACAAGGCAGCA
CCGGTGCCGATGATCGTGTGAACTATCAAAGAGAAGGCGTCTATGTGGATTCTAACGGAC
GCCGAAGATTGTTAATTTGATGTCGCGGAAGTAGGCCTGTGTTATTTTTCCGCTTTTACG
GATATGCATTGTTGAAAACACACTCTTTTACTTATTCAATAAAAATGGTAAATCTTTTGC
TTCATTTTAAAAAATCACACATGAATTAACAAGTTTGTTCGTTTTTCTTTTAAACTTGTG
GTCACGCCAGCATGCCGATGGATGCACAGCTCAAACCTTGTTGTGTACTCCCTTTATTTC
TAAATACAAGTCATTATAGATGTTTTCCTAGAAGATTTTATATAAATGTTTTTTTTGAAA
GAAAGGGGTTTCCCCCCTGCCTCATTTTATTGAAGCAGAGCAAAGCCAGAACAGACATCG
CATCGAAACGATTACGTCTTATCGAACCTGTAGGTCATCTCCCTACAGCCACTTTTCCTA
GGAAAGGAAAACAAGTACTCATCCCAGCTACAATTTAAACCACCGAAACACAACTCTTAT
ATATTACAGCCAGGTGGAGAAAGAAAAGAATCAGCTTTGGTCACTCCACGCGATCCTCAG
CAGCTCCCCCCGGCGCCTGTCCAGCATTGTGACGAAGTTCTTTAGTACAACCATTTGAGC
AGCGTCGCAGAGAGCCGACCATTGTTGCAAAATCCCTTTTAACTTGACAAGGACGCAGCC
TAGACCTCTCCAAGTACGCCCCTGGAAGCAAAATTCATTCCTTAGTGTCCAAACACTCCA
CAAGCAGGCAACAATAATCATATTGAGCATTTTTTTTCCTTCTTATTCAGTTTCCAAAAG
GAAGCTACATCACGAAAACAACGCATTTCATCGCAATGAAAAAATTCAGATATAGCTGTC
CAGATAACACCA