Map Locations of contig_49221 (9928 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_49221

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64710 3 2788 bp MLOC_64710.1 Available Available LOC_Os02g39720.6, FRAME:+2, EVALUE:7e-49, 13102.m04411 protein splicing factor, arginine/serine-rich 7, putative, expressed





CDS Structure of MLOC_64710






Contig Sequence (9928 bp)

>contig_49221 9928 assembly3_WGSMorex_rbca.fasta
CGCCACACCGGTGGCCGCTGGCTCGTAAGCCGGAGGCGCGAGGAAACGCGCGCGGGAGAC
GCGAGCCGACCAACATTGTATGCCGGCGCTGGCATGGTGCTGGCATATGAAACATGGTCG
CTGGCATGATCGGCCGCAGACCTTTTTTTTAATATGTTGATTGCGGACATGAAATGGGTC
GGCTCGTTGGGCGCACTGTCGTCCCAAATCTAAAATAAGGCGGACGCCGCGCGGGTGGCC
TATCCAAACGGACAAAAAGTGGACAAATTTACCGTCCGTTTGGATCGGTCCGTTGGAGTT
GCTCTTATACCCTACCGCCAAGGACATCAGCGGTAGCAAAATGATGAGATCCAATTTTTT
TTAACCAAAGTTAGATTCGACTTAACTTTCAGCAAAAAATCAAAACAACGAATTTTACGA
CCGGAGGTAAGTAGTAGTAGCTAAAAAGGACGCCCCAGGGGTCAATCCAGAGGGGCAAAC
AGTGGTCCGGACGATCTTGAACCAGCAGCTCATCCGCCACCGTAGAAACCACGAGGCAAC
TCATGAGTCCTCTTCCGCAATCCCCATCCCATCCCATCCCATCCCAATAAACGAGAATTC
CGTAAATACCCCTGGCCCCGAGGCGTCAGCCCTTCGCTCCCTACCCTCCCCCCCTCTCTT
CCGCCCGCGGCGGCTCAGACTTAAACCCTAGAGCCGCTCCCCTCCTCGCCTCCGAAGCGC
TCGCCGCCCGATTCGCCAATCCCCAATCCCCCCTTGGAGGCGCTCCCCCGAAGGTAAGTA
CGCCCCACAGACCCCCCGGTATCTTCGAGTTCCAGGCCCGCGTGCCTAGCCTTTGCGCTT
CATCCTGTTCCCAAAACGCGAGAATTTTTCTGGGGCGTTTCTCTTTTTATCTGCGGGTGG
ATGTTAGCAGCTGCTTCGTGCTGGATTCGGCAGCATTTCTTAAAGATTTTTTTCGTTTTT
CCTCTTGCAGGGCCTGCTGCTGCCTGTCATGGCTCGCGTCTACGTGGGGAATCTGGATCC
GCGCGCCACTGCGCGCGAGATCGAGGACGAGTTCCGCGTGTTTGGGGTTCTCAAGAGGTG
AGATGCCTGTGATTTGTTTAACAGTTCTGAAGCTAGTACTACGGTACATACCTTTTCACG
AGTTCGGTGTGATATAACTACTGTGCTTGCCTGTAGACATGCTAAGTTGTAGTTTCACAT
TTCATGTTCAGTTGGTGACTTGCTCGTCTGCTAAAAGTATACGAGCCAAGTATATCGGTA
TGCTGGCTATTTAGTACGCCTGATTTTAGTGCATGATGCGTGTGAAATTGAGAGTTGAGA
CTATCTCTTGGTGAACATGATGCAGCTTTCTGTTTGATAAATAGAAGCTTTTATGCATAA
TTATATCTTAGCTGCATTGCTTGGTCACTTCTATTCCTTTCAATCCGTTTCTTTGTTCAT
ATGGTGAAGTTTCCCTGATAATAACAGTTTATGTCACTGCATTTTGTGATTTTTTTAATT
TAAGTTCAACGGGGCATGCATGTGCAGATCTTCTGTATCTTACTGTTATGACTGTTGTGC
ATTATAGCCGGCGGAGGCCCACGGGCGCGGGCAGTTAGGCCCAAAGGCGCGGGCAGTTAA
GCCCAATGGCGCAGGCAGTTACGGGCTTGGCCCAACTTATTGTTATTTTTATTAGCACCT
AAGGGATTATATAAACCCATGTAAAGACTCGTTTTGATATTAAGAAGTAGCAATCATTAT
TGCTCGGCTTTTGCCGAGACTCCAAAACCCTAGCCGCCCCAACGGCCTCCTTCTCCCGAC
GCGACCTCAGCGCCGTTGCCGGTGCCTCCAGCCTCGCCAACCCTCCTTCGACCACTACAA
CCTAAGATCTTGTCTTGGTAGGAGCCTTGCTCCTATCAATCTGGTATCAGCTGTCTCGGG
TGCGATCATGTCCACTAATCAGCCCACCGCCACCCTTCTGCTGCCAGTCACCACCACACC
GTCGGCCTTGTCGGGGCCGATCGCATCTGCCGCAGGGATGCCGCCGGGCTCCGCCCCCTT
CGCCTTCACACCAGAGGAGATGACGGCTGTGCTCCGGGAGCTCGGGCAGGCGGTTGCGGG
CATCCGCACCTTCCTCTCGGGACCCTATGCCCCGCAGGCCGCAGCAGCCAGCCTCTTTCG
CCTCCACCATGGCGCCCAGCAGCAGCCACCGCCATCGCCTTTGCCATCCTTCCCTGTCGC
TCCACACTCCCATGGGTCACTAGCCGCCGGCTTGGGGGCGTCCTCGGGCCCAGGGGTGCC
CATCCACCAGGTCCGGTTTCCCCCGTCGCCATCCCCGTTGCCGGCTTGGCTCGCGGGTCC
GGGCCGGTCTACACGACGGCCTCGGGCCAGCCACACTTGTTGCCGCTCGCGCCGTCGCAC
CCGGCCATGCCGTACGGCGTCCCCTCCAGTGCCATCGGCCCATACGATGGCGTGGACAGA
CCCCGCCCGGTCCCCTCACCCGGTTCCCCGGCCGCCACCCCCCGCAATGGCACGTCCTTC
CCAGGCCTTTGTGGCACCCAACGTCGCGGTCGTGGCGCGCCTATTCCGTCGGCTCACACC
GGCCGAGCAACTCGAGCGCCGTCGTCAGGGGCTGTGCTACAACTGTGACGAGCCCTACGT
TTTGGGCCATGTCTGCCCGCGACTCTTCTACCCGTAGGCTGCAGACTACATTGAGGTGGC
CGCCACCGCTGCCGGGCTCGGCAACTTGGCCGCTCCACTTTATGCGGAGGTCGCCTGGGG
GGCCGCTCAGGCGAACGCCTTCCTGGTTGCCCTCCATGCTCTCGCGGTATATGGACGGAG
AAGACGATGTTGCTGTCGGTGACGATCAATGGCGAGCGCCTCCTAGCCCCTACTGGATAC
ATGCTCCACCCGTAACTTCCTGTCGGGGTCCACCATGCCCCGCCTGGCACTCCAACCGAC
TGACAGGGAGTAGATTCGGATTACCGTGGCAAACGGTGATCGCCTCCACTGCCAAGGCAT
TGCCCAACATGTTCCCCTCATCATCGGCGACGAGCACTTCGCCGTCAAGTGCGTCGGCAT
CAACTTGGGCCGCTTTGACGTCATCCTTGTCGTTGGTTTTTTGCGGACCTTGGGTCCCAT
TCTTTGGGATTTCAACGCCCTGACGATGATATTCTGGAGCATGGGTCGCCGCGTTCGGTG
GGAGAGCGTGGGTGGCGCTGCCCCAGCGAGCCCCCAGCCCCAGCTGATGGCGACCTCCAT
TGACCCCGTGCAACCCCTGTTGGATCGCCTGTTGCAGCAGCATAGTGACCTCTTCGGCGA
GCCACATGGACTTCCACTAGTCCGGGCCTACGACCATTGCATTCACCTGCTGCCGGGCAC
ACCACCCGTGGCCGTGCGACCGTACCGCTACCCTCAGCTTCGAAGGACGAGCTGGAGCGG
CAGTGCGCGGCCGTGCTCGCCCAGGGCATCATAAGGCCTACCACCTCGCCGTTCTTGGCG
CCGGTGCTCCTCGTTCGCAAGATTGATGGCTTGTGGTGATTCTGCATTGACTACCGTGCT
CTTAACATCAAGACGACCAAGGACAAATTTCCAATACCTGTCGTCGAGGAACTCCTGGAC
GAGCTACATGGGGACTGCTTCTTCACCAAGCTCGACCTTCGCTCCGGTTACCACCAGGTG
CGGATGCACCCGGACGACGTCGCGGAGACGGCCTGTCGCACCCATTATGGCCACTTCGAG
TTCTTGGTGATGCCCTTTGGCCTCGCCAATGCCCAGGCGAGATTTTAGGCCCTGATGAAC
GAAGTCCTCCGCCCCTACTTGCGGCGGTTTATGCTCGTTTTCTTCAAGGACATCCTTATC
AACAGCTCGCCCTGGGCGGAGCACTTGCAACACGTTGCCATCGTCCTCAATGAGCTTCGG
GTGCACCATTTGTACCTCAAGCGTTTGAAGTGCTCGTTCGGCATGCTGTCCGTCGCGTAT
CTCGGACATCTCATCTCAGCGGAGGGCGTTGCCATGGATGCTGACAAGGTCGCAACTGTC
GCGACCTAGTCGATGCCGCACTCGCGACGGGCCCTTCACGGGTTCCTGGGACTCGCGGGC
TACTACTGGAAGTTCATCCGGGAGTTTGGGCTCATCGCGGCACTGCGCACGCTAGTGTTG
CGCTGCGACCCCTTCGCCAGGGACACAGACGCGGCCGAGGCCTTCCAGACACTTAAGCAG
ACGCTCACTACGGGGTCGGTCCTCCAGATGCTTGACTTCGACAAGCTGTTCACGGTGGAC
TGCGACGCCTCGGGCGTGGGGTTTGGCGTCGTCCTTCATCAGGGTGAGGGACCTCTCGCG
TTCTTCAGCCGGCCTTTCGTCGCGCGCCATCACAAACTCGCGGCCTACGAGAGGGAGCTC
ATCTGCTTAGTGCAGGCGGTGCGCCACTGTGGGGACGGCCGTTCTTGATTCGCACAGATC
ACTACAGCCTCAAGTTCCTATTGGACTAGTGCCTTTCCACCGTTCCGCATCACCAGTGGA
TCAGCAAGCTCTTCGGGTTCGACTTCACCGTCGAGTACCGGCAGGGTTGCCTCGACACCA
TGGCGGACGCGCTGTCCCGCCGCGATGCTGACCACGACATGGGCACTGTCGACACCGAGG
GTGCTGCCTTCTGCACCCGCTCGGGGCCCTCATTCGCCTTCATCGACGGCATCCGCTGCG
CCACGGCGACCGCTATGGATGCGCAACATTTCTGTCAGTGGCTCGAAGAGGGTGAGTCGG
TGCATGGACGACGGCTTACTCCTCCATGGGCGGCGCCTCTTTGTGCCGGATCACGATGAT
CTGCGCCACCAAACCATTCTCCTGGCACACTCGGCCGGATACGAGGGGGTGCAGAAGACC
CTTCACCGCCTCCGAGCTGATTTTTACATACCCGGCGATCGTGTGCTGGTGCGAGATTGG
GTGCGGTCCTGCCTGACTTGCCAGCGCAACAAGACGGAGACACTTTAGTCGACGGGGCTG
CTACAGCCTCTTGAGGTGCCCTCTCAGGTCTGGACTGACATATCCATGGATTTTATCGAG
TGTCTTCCCAAGGTGGCAGTTAGGCCCAATGGCGCAGGCAGTTACGGTCTTGGCCCAACT
TATCATTTTTTTTATTAGCACCTAAGGGATTATATAAACCCATGTAAAGACTCGTTTTGA
CATTAAGAAGTAGCAATCATTATTGCTCGGCTTCTGCCGAGACTCCAAAACCATAGCCGC
CCCAGCGTCCTCCTTCTCCCGGCACGATCGCAGCGCCGTCGCCCCGCCTCCAGCCTCGCC
AGCCCCTCCTTCCACCCCTACAACCTAAAGATCCCGTCCTGGTAGGAGTCCTGCTCCTAT
CACTTACTCCCTCCGTCCGGAATTACTTGTAACCAAAATGGAAAGAACTGAATGTATCTA
GAACTAAAATATATCTAGTTACATCCATTCCCATGACAAGTAATTCTGGACGGAGGGAGT
ATTTTGGATTGCCATATGCTAAAGAAATATAATGTGGTACAAGTTAATAGGCTTATATGA
AAATAGCGAAGGTTAGAAAAGTAAGAAACTAATATAAGAGATGTAGAGGCAACATTAAGT
GAAGTTATGTGTGGGTGCAGATGATGGCATCATCGTAGTAATTCTTTAATTATGTTGGGC
TGCCAGTGTATGCCTTTTCACTGGAAGTACCAACAGTTAATGTGAGAACTAATGCATGGC
TCAGTTGTACCTTTTTGAACTCAACAGTCATGCGTATCTCATTATTTTGAACTTCTTGTC
TATTGGTTAAAGGGTTATATGTTTCATCTTTTTCCCCAAGCTACTGGTGTATTTCTGAAT
GTATCAAGCTGGTGGGTCTTGTATTTGCGTGGCAAAGAGTTATGTTGTTTCTGCTTTCTC
GTTAGTTGCTGGCTTGCTGTTGATTAGGATGATTTTAACTTAACTGTGGTAACAAGGATG
TTCCACTGGTTGCTTGATGTGAAGTATGAAATTGATCTCCATACAATAATTACTTAGATG
TTTTTGTGCGTGTGGAAATTGGATCGATTGGTTTTGAATTGACTTGTTTTCATTGCAGTG
TGTGGGTTGCTAGAAAGCCACCAGGATTTGCTTTCATCGACTTCGATGAGACCAGGGACG
CAAAGGATGCAATTCGTGAATTGGATGGTAATATGATAATCATTTTTTTCATGACGATTC
TGTCTCACTATCTCCATAAGTTAGTAGATTCATGAGTCTAGTTGAGAAAATATTAACGGG
GATCATTTCGTGGTTGCTCATTGATCCTTAACCTCATCCCAATAAGTTCACTAATCACTA
GTCTAGATTTTCATACGACTGACAAGTAAAAAATTTGTAGTCTATTTGGCTTAGCTAGCT
CATCTTTTAGCTGGTGATGCTAGTGAATTCAGGCCTGTTCTTGTGGGATTTATATTGAAT
GGTCTGATGTATAATGCTTTGTATTGTCTTTTCATCAAAGGAAAAAGCCAAAAAAAAAGG
AACTGTATTTGCACAGAAACATGCAAATATATTAGCCCTGTATTTGAAAACTGTGAACTG
CGGCCATGACCAGAAACTAATAACTAATCAGTATCTATAATCCAGTAGCAATGTGTATTA
ATATGTCCTATCCAGTCAGCAGGCACACTCACATATAGGCTATAACATGATCGCGGATGG
CTAAGATAATTATGCTGCACTACACGATAACTGCTTTTGTTTACTGAGACTGGCAAGCAT
TATCATGTGCATTTCCTTCGAAATAAAGAAACTTGGATGACCTTGGTATACCGCCAACTT
ATAAATCATAAAATGTTCAACTCTGTTTGAACTTAAAACTGATAAGACTTAAGAGATCTA
CCTTTTGTTTTAAGGTCTCCTAGATTTGAGCAAGTTCCAATGTCATCGTATGACGACTAC
TTGATCAGCAACAAATTAGACATTTTCATTATTGGAGATTGGACTTCTGTTTGCTTTAGC
TGTTATGGAGTCATCTGTTTGTCTGAACATTCATCAATTTGCGATTATGACAATCGTGCT
AAATATGCTGTGCTAATAGGTAAGAATGGGTGGAGAGTTGAGCTGTCAACCAAATCTGGC
AGTGGCCGTGGCCGAGAACGTGAACGCTCTGGAGGTTCTGATATGAAGTGCTATGAGTGT
GGTGAAAGTGGTCACTTTGCACGAGAATGTCGCCTACGGATTGGTTCTGGGGGCCTGGGT
AGCGGAAGACGCCGCAGCCGAAGCCCGAGGCACCGCAGCCGCAGCCGTAGCCGTAGCCCA
AGATACCGCAGGAGCCCAAGCTATGGTAGAAGGTATGCCCTCCTTTCACAGACAAATGAT
GTTTTAGGCATGGACACATATATAGGGCCTGAATATCCAGCAAATGTCATATTTTTAGGC
ATGGCAAGTCAAACGTTTTTCATGGCAAATTATGTTTCTCGAAGATGGCAAGTTTAGTTA
ATGAGCATGGCAAATCCGTCTCAGTTTATTTTTTTGCTTGAAAATTGTCGTGCTTGCAAA
CTAAATTTGCCATCCTCGTGCTAACATAAATTCCCATGAAAACTATCGATTTGCCATGCC
TAAAAATCTGAGGTTAGATTTTTAGCATTTCCTTAACTATATAGGCTTGAAGAACAAAGG
AAGTGTTTGTGAAAGTTCTTCAATTTCTGATTCTTACTTTCTTGCCCAAGTCCTATGTCA
TTTGCTCCGTGTTGGTAAAGTGGTTTAATGTTTCCCTTTTTGTTTTGTCTGCTACAATTT
TCATTTGCTTTGTCAATAGATCAGAAACATAAATTGTGAAGAACCATTTATGTACATCAA
CAGATACAACAAATTACTGACAATTGCCTTGCCATTCTAGTAAGATCTCTTATGAATACT
TTAGCAGCTGTATGCTCAATGCTTTTATCTTTACCTGATTCAGGAGCTACAGCCCACGGG
ATCGGTCTCCCAGGAAGCGAAGTTACAGCAGATCACCACCGCCTCCCCGCGCGCGGAGCA
TCACCAGGTCTCCGCCGCCTGCCCGCGCACGAAGCATCAGCAGGTCACCACCGCCTGCCC
GTGGGCGAAGCATCAACAGGTCACCACCGCCTACCCGTGCACGAAGCATCAGCAGGTCAC
CTCCGCCTCCTCGCGCCAGAAGCATCAGCAGGTCACCACCGCCTCCTCGTGCCAGAAGCA
TCAGCAGGTCACCACCACCTCCTCGTGCCAGAAGCATGAGCAAGTCACCACCACCTGCTC
GTGAACAGAGCTATAGCAGGTCCCCTGCACAGCCACCCCAGCGTGAGGAGTCCCCTTATG
CTAATAACGCGTGAGCACTTAGTTCCACAATGCTGGAAGTGTTGTGGGGTGGGGGCCTCC
GCTTGTTTCCCTGAATGTTTTGGTATGACTATTGAATTGCCAGGCGACCGAGTATGTTCT
TCGTTGGCATTTTTTTTTGCTGCTGATACAATTGCGGAAGCAGGATTTCTCTTGACTGGA
TGACTCTAGCGTATGTAGTTGGTCTTAAGACAAGATGTGTTTTTCTTCTGTAACATTTGT
ACTGATGGATTATTTGGATGCGGTGCATGGATATTTATGTGCTGAAACCGTTTCTTGAAT
CCTGATGTGCCACCGAAGGCAGTCTGTTAGTTTTCTGTGCTTTAGAGACGTGTAGCCCTA
GTTTAAAAAACCGGACCAGACCAGCGGTCGAACTGGAAAAAATCAGAACTGATGACCTTA
TTGGTGTTTTAAGCTAATAAGACCGTTCTGCAATTAGACCGGAGGAAACTGGTTAAACCG
GCTAGTTTTTTTGGAAAACAGGTGAAACCTTTCATGATATTGATGCCTATTTAGTCAGGT
AGTACGAAACGAAAATTCAAGAGATTCTGCAGCATGATGTGCAGCTAAAAAAGGCTTCAG
TGCAGCTGCTGCTGTTTAAGGGCATCTCGAACGGGATCACGGAATGACCATAACAAACCA
AATGTTTTGACCCTCTTGCACTTGTGGTCCAGTTACCTGGCTTAGTTGGGCAGCTTTTGC
CATCCTTAAACCGTCTGCATATGTAAATCCAACGTGGTTCTTTATAGGTTTGTTTGTCAG
TCGGCCCTGGACCGCTGTCGTGTTCGCCCCTCACTGCCCTGGGCTATCGAACAACCCCAT
CCGTCTCTTTCGAACTTCAATTCCGATGCACACCTAGCTTTCCGAGCCACATCAATGCCT
ACTTAGAGCATGGAACAAACGACATTGATGCCGTTTGGTCGGACCGGACAGGAGGGGCGG
CGGTGACCGACCTGACCTCTCATTTGCTGCCACTTCAATGCGACGTAGCTTTTCAGGAAC
AAACTCTAAACGCTATGCCACATTGAAGCGGTTGACCGCCTCGCCGAGGTTTTATAAGCT
GTGTATAGGCACCATCCACGTCGCATCATCATATCGCTCCACATGTCATCCTCTCTTCCC
CTGCAACTCCGGTGATGAGCAAGTCGTGGGCCTCGGCGCCGGTAGGCGGCGCCTCCAGAA
CGGGCTCCGGAGGATTACAGCGACACCCCTCTCAAACTCTGGGGCCGTCGTCCTCATCGG
CAGACGGCTCCTCGAAGAATGTGGAGATCGTCATCTCCTCCTACAACAAGGAGGACCAGA
CGCTGCAACACCAGTCGGCATCGGGGCAGGGCACGTTGTACGCCGCCACAAACGAGGAGT
ACAGGCATGAGATGAACGACATGGTGGCACCACCGAGGACGCCCTCCCCGTCAAGCCGAA
GCCCGTGTCCCCTCCATGCTCTCCCAGCGCAACCGTGTAGGATCCGAAGTATGTCTAGAG
GGGGGGATGATTAGACTACCTGACCATATAAAAATTTAGCCCTTTCCTAATTTTAGCTGT
GGGCCAGTTTTAGCAATTATGNNNNNNNNNNNNNNNNCTACACATGCACATCTAAGAATA
TATCAACGGAAAGTAAAGACATGCAAAT