Map Locations of contig_49120 (9547 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_49120

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64635 2 2591 bp AK250022.1 Available Available None





CDS Structure of MLOC_64635






Contig Sequence (9547 bp)

>contig_49120 9547 assembly3_WGSMorex_rbca.fasta
TAGATGCGCTTCTTTCTAGGACCGCATCTTAGTCATTACAACCGCCGCGAGGGACCTCCG
CGGGATCGCGAGCACCGATGCGAGGAGCCTCGCGGCCTCCATCCCTGGGGCGCCCACGAC
TTCGCCGGTGTCCTCTCAGGCAACGGGGAAGCAGGGGGAAGGATCAACAAGTCATGTGCA
AACCTTCACTCTAGAAATCATTTCATCCGCCTCCGCATCAGTAAAGAGAGCAGTGAGACC
CACCATACAAAATAAGAAAATATAAGAAGATAAGGGATCTCCTTGCTTTAAACATCTCGT
AGACTTGAAACAACAAAATCCTGTATTTTCCTGGATAGACACTGCGTAATAAAATTGACC
CAATTCTCCTAGAAGCCAGGTTTCAACATAATCTTCTTTAAGAAAGACCAGTCAAGCCGA
TGATAACCTTTGTGCATATCAAGTTTAATATCACACATACCATCTTTGCCTTTTCTCTTG
TTTTTTATTGTATGAAAGCACTCGTAAGCCACTAAAAAATTGTCTCGTAATCATTCTTTC
GGGCACAAATGCATTTTGAGCCAGACTGATAATGCGTGGCAGAAAAACTTCCAAATGAGT
AGCCACCATTTTCGTGATAACCGGAATTCCACTTTGAGCCAAGCATTTCGTTCCGCTCTC
TTGGTCGGCGATTCAAACGTTCCACGCGTCGTGTCTGGGTGAAGGACGATCCTCCGGAGC
AGTCCACGGACCAGGCTTGACTCGACTGTTTCGGGGGTTCGGACGACGCGTTTCCTCTGT
GCCTTGATTTAAAGCCGGGGAGGCAGGATCGCAGGACGGCAGCGTTATCAGGCAGCCTTC
CGTCCGTCCGTCCATAATTCGATCGCACACCACCACCCCCGAACCTACCACCTCCTACCA
CCAACGCGACGCATTCATGGCTGCCCTGCTGTTTCCCTCACCCGCCCCGCCACGACAGCG
ATGACTCGCTATGCCTCCGTCCCATGATACATCATTGCCGTTCCGTCCCGTCCCGTCCAC
TCCGTGCTGTGGTCACGCCTCACGCGCCGTAGGGCCGGCCGCGCGCGGGCGGCGGCCGAC
GGCGACGGTTAACCGTGGCCGAGGAGCACAAGCCTGATGCGATGCGATGCGACACTGACC
AATGGCGACAGCGCCTTTCCTGCTTCATTCCCCCACCCCCAACCTCTTCCTGGTATATTA
AGTGGGTCGTAATGCTTAACCCCTAAGGCTCCCTCCGTTTGAGACGCGGCAGAGACAGTT
TCCATGAAAAGCCCTTTCACCATTGATTGTCGGAGAACGGTCATCTTCAGCTACAGTTAT
TACACCAACAAATGAAGATACAATTCCCCCAACAACAAAAATGAAGATCAAAAACTTTGT
CTAATGAACATATTACAGACCGTAACAGCAGGCGTGTTTTGCCATTTAGGTTTTCAGGCG
ATTCCGATTCCTACATCTTTGACAGGAACGGGGAAAGAAAATGTATGGATGTAATGTCGA
TTCTGCATGATCTCCGGTAGAAAGGATCATCATGTCGCCGCTATCTGCAAGATCGTCTCA
GCTGCAAGCAGCTCTCGCCTCATGGGCTTCCGCCATGGAGCCACAGCCGCCCATGTTCAT
CAGGGTGGTGAGGTGGGGGATCTCCTTGGGCACAGACGCCGTCAACACCTGCAAACAACG
GAGGGTGTCATCATCTTCTATTCCGGCTGCTACTAACATTTACCTAGGCGGTACCATATG
AAACGATTAGGGGCGGTACCTCGTGGCCGGACTCGGTGATGAGGACCTCGTCCTCGATCC
TTATTCCTATGCCACGGAACCTGTCCGGGGCCTTCTCATTGAGTATCGGGACCGGGGGAA
TGTAGATCCCCGGTTCAATGGTTATTACCTGTGCACATGAACATGCAGGACCTCTTGTCA
ATGTTAGAACTCGGAATGCCGCGGAAGATGGATGATAATTGGTAGATTTAGGAGATGCAC
TAAATTTGATAGTGTTCATGTAAAATGCACTGCGCAGAGGGCCAGCTGCTGCTGTATTCA
GATGAATGTCAGATTGGAACATCTGCAGATCTACTTACAACGCCTGGCTCCAAGGTTTTG
TCGCTGCTGAGGCTCGTGGAGTCATGAATATCCATTCCCAACGAATGACCTGGATGCCAG
GATGACAAATGCTTATCATGCTGGTCCCAAGATCCAAATCTATTGCATCAAAGGACAAAT
CTAATCAAGAGACAGGTAGATTCTGAGACCTATTGAGGTTGGATTCAAATAATTGTATTG
GATAGATTTGCCCTTTCCTATAATTCCGAGTTCTTGGAATCCACTTATCAACATCTTGAC
CTGTGATTTGGAGATTAGAGTCAGGGATTTTTTTTAAATGTAAGTTTAAATTTCTACTCC
CTCTGTAAACTTTTATAAGACGTTTTAGGTCACTACTTTAGTGGCCTAAAACGTCTTATA
AAAGTTTACAAAGGTAGTATTTACAACAACAAAAAATACTGAACTAGAACATATACTGAG
GATATACCGAATGATGGTGTATCTCTTTAATGCTCGTGCCTGGTTTACAAAGCTTTATGC
ATTCCTTATTCGTCTCCAGTATTAAACTGTACAGTTCTTCCTGTACAATTGAGGATAAAA
GAAGGTACTAGTAAGTCCAAAATTACTGCTTTTTCTGTTGGATACAGGTATATCATATAA
ACAAATGAACACTGAGCATTTACCTGAGCAGCTGAAAATCTACCACAGGGTGGCCATGTC
CGCGTCAGGTCACTAAGGTAGCCATGGTACTCACATCCAACATCCATGAGGACAAGATCA
CCCGAGTTGATCTGTCAAACGGCTAAAATCAACTTTACAAGAAAAGGTATCTGACATGTG
CAACCAGAGAAAAACTCTGTTGTACCTTCTTATCATTTCTTGAGTAATGTACAACACTGC
CATTTGCTCCACCACCAACTACAGGATGGAACCTAAAAATAAGGAAACAAGAAGAAAAGG
GTAAATCATCTTTGCATGGCACCTGGCTCACTCAACAAAAGACAATAGTTCCTCAATTTA
TGGATCTCAACTGATCACTGCAAACTTATTCCACCAGCTATCAGCTAAGAAAAACGGATG
AACACAGGGCCACACAGTCAGTGCCTCAGATGCAATCTACTCCCTCCGTTCCTAANNNNN
AGTCTTTTTAGAGGTTCCACTAGAGAACTACATACGGATGNATATAGACATACTTTAAAG
TGTTGATTCACTCATTTTACTTCGTATGTAGACCCTTAGTGAAATCTCTTAANNNNNNNN
NNTTTAGGAACGGAGGGAGTATATAGTAAAGAGATGGATAAAAACAATATACAGTGACAA
TAAATACTTACGCCATTCTTTGGGCACCTCTCATTTTGCACTCATACTCTATTTTAGCAG
CTAACTGGCTTTCCTCCCTGTGGGTCCTTGAGAGCAACATTGTCTGCAAAAGAGACTGGA
CAGACAGAGAGAATTTAAGTCAGTAAACAGAGAAAGAGAAGCAAGACGATCGTTCTGTCA
TTGTACAGTGTATGAGTTGCAAAATTGAGTCGCTTCGTCTTGTCTTCTATGTTATTGAAT
GCATATTTGCCAACTTGAGGTAAAATTCTATACGTAATAATAAAGGAAAAGCATTGAAAT
CAACCGGTTGATTTTTCTAGCTCGTAAGTCGCATGGGGCGTCGTCGGATCATGGATGATC
AAGCTGTCCAATTTGGCTGACGCGTTTGTGCTACACTAATGTAGTGAACTTGTGGGCTCC
ACCCATGAGAGAAGCAACGTGCCTCTTTACGTGTATGTACACCTCGGACTAGGCTGCACA
TTTGCTTTGCAAAACATGTTTTGACAGCGGTCTTTCAGGTGAACTGTAGTAATTATCTGG
GATAGAAAATGATGGAATCAAGATGTTCACCCATCCATTTTTTTGAGTGGTGATGTTCAC
CCATACATCATCGAGCGAACATATTTTTTTGGTGGAAAAGGCTTCTCCTCAACCGACTAA
ATGTTGACGTGCGTCGACCATCCGATCAGCCTGTACCCGTGTTGGCGCACAACAACTCCC
CACCACACAAGCGTGCTTTTGCAACATGAGCCCTGTCCATGTTGCAAGACAACCAAGCGC
AACATACATCGTGTTGCAGACCAATCAGGTCGAGCGAGAGCAACGGAGGTTGGATTCGCA
TCGATTAGGCAACATAGGTCCAAGTGGGTGAGGACGACAAAATAGTGGTGAAAACATTAC
ACAACACGGGTCATGTTTCAAGCCCACCAAGCATAACAGGGATCATGTTGAAAACCAACC
AAGTGTTTGCATTGTGAGCACCATCTTGTAAACCTACCAAGTGCAACATGGACTATGCTG
TAAACCAACTGATAAGTGTTTGCAACGCGAGCGCACATGGGTCATGTTGTGAACCTACCA
AGTGCAACATGAAATATGTAGCAAATGGTGTGTCGCATTCAACATGGGTCATGTTGCAAC
CTACGGAGCGCAACACGGGTCACGTTGCAGACCCACCAAGTGTTTGCAACGCTAGCGCAA
CATTAGTCATCTTTTAAACTTATCGAGCACAACATGGACTATATATTTTATAAACAAGTC
GAGTGATACCGCCGTGTTGCGAAACCAAGCAGCGTTGCCAGGATGGTCAATGTTAGTGCA
AGCTAGACCCTCGACATTGCAAGAGGTTGCAAGGCCGACCAATTTTTCTTTTTGCTGCTA
CAAAAGTTAGACCGCCATGTTGCAACACCATGTGACGCTGCAAGGCTGGCCGACGCTACT
GCAAGTTGGACACACGATGTTGCAATGTGAACCAGTTTTTTCTTTTCGCAGCAACAAAAG
CCAAACATGCATGCTGCAACACCACGTGACGCTGTAAGACTGACACTGTTGCAAGCCAGA
TGCCCATTGTAAACCGGACACGCAATATTGTGAGGTCAGACAACTTTCTTTTTTAGTGTA
AAAAGATTCATTGTCGGGCTACCTACCAAACCACACGATACTGCAAGACCAACTAATGAC
GTTGCAAAGCCAGGCATTCAACATTGCAAGTGGACATGCAATGTTGCAAGGACGTCCATC
ACTCCTTTTTGTTGATGCAAATTCTGGACCGGATAGAGGGAACATGCTGATGTTACAAAG
GCCGTTGTCGTCGAAGCATGTCATCGCAACATCATCGGAGCAACCTGACCGCAGTCGAAG
CATGCCACCGAAGCATCATTGGAGCAACCTGACCGCCGTCAAAGCATGCTATCGCAACAA
CACACGAATAGCCTTGTCGTCGGTCGTCACATGGCCGCGGCCATCAAAGAACGTCGTCGA
AGCAGCCATGCCACCGTCACAACACCGCGGCAACCATCAAACACACCATCAGAACATTTG
GGCCTCCGTCCCTGTGGTCGTTAGAGCACAATGTCACAACATCGCCATGACCATTTGAAG
CACGGTGTCGCAGCATCACCGCGACTATCAAAGCACATCGTCATAGCATCATCGAAGCGA
CTGCCATCTCAGCACCGCCGCGACCGACAAAGCACGTCACTGCATCATCATCAAAGCAAC
CGGGCGGCCGTCGCAACATTGTCATCGTTGTCGAAGCACGCCGTCACAACATCATTGAAG
CAGCCGATCTGCCATCGCAAGCACACAATGGTCGTTTGAAGCATGCTGCCACGCCATCGC
AATGGTCGTCGAAGCATGTCGTTCGAGCACGCCTTACAGCATCACCATGGTGAAGCAGTC
GGGTTGCTATTGCATAGTCCACTATCCAACATCACAGCACTGCTCGTGGCCTCACATTGA
AGCCCACGGTAGCTGGACCACCGTCACAACATCGTCGTCTCGGCCTTTATTGTGTTCGCC
CTCGTACGCCAGGAGCCACTCCGCGCTTGTCTTTACAGCAGCTCGTGTTGCTGCAATGGC
GTTTGTCATTTTGGTCTCAAAAGTTTGCATGCTGCTGCCATGCACTTGCTGGAAATAGAA
TACTCACTTTTGTTGTCATACCACTACAAGCTATAGACAGGAACTCGCCACACCTAATGC
AAGTGCGGCCGCTACAACGTTGCCGTGAACATAAGCTGCGAGCATGCGAACGCGCGCGTA
CGTCTGGCTGTGATGCGTGGCAGCCTGGCAGGAAATGAATGACTTCGCGTCTCCATCGAA
CAGCTATTAGCAAGTCAATCGGGTGGCTGACGAGGCGGATGATGTCTGGGCGGGATCAGC
CGGCTGATCTGTAGCGCTGGCCAATAATAAATGGTTTTAATTTCAGGGAATCTTGTTGCC
AATCCAAACAATTGTACAATCTGAGTTATGGGCTAGCTAAAGGGGCAGAAAAATAGTTGA
CGGCTGTCTACAACAGACATTCTCAACATCGTTATCTCATTGGCGGTCTAGAAAAAGTTC
TCTCGCTACCAATGGTGTTCTGTCTAATCCTCTGGCAGCACAATGGACCAGTATCAATCC
CCACAATCAGATAATCCACCATAACATTATCCTCAACCCAACTAGCAATTACCCTGTACT
TTTTAAAATATATCATTCACCTACGTATTACAACTAAGAGAGTTTGTGACCTATGTTTTT
TTACTGGAATATACAAAATAATTTCGGTAAATTTTCTATCCAAGGCTAAACTGAGAGAGC
ATCAAACTTAGTATCTTCTAAGAATGTGTGATGAAAACAACACAAGTCCAACCAAAAATA
CCTGAGAAACAATAGATGCTGACTCCCTCATCAACTTGATTTCCGATTTTGACTTGATCC
ACCGCAGTTCATCAGTGTAATGTGCAAGATCTTTTACTTTATTGTTGAGTGATGCCCTGC
GGAAGGCATCAAAGTTCCTATAAGAAGATGTGGATGCCTTTACATTGTGATACACCACTT
TTGATTGCTCAATCATTTCGGGGAGGATCTACATTTTAATAGAAATTATGTCAATTGAGA
AGCATTCAGTGGTCGGCAACTAAGAAAGTACTCTCTCTCTGATCACAAAAGGGGTGCCGT
CTTGGAAATTGCCACGGTCTCCAAAATGCTACCTTGACCACTAATTCTAACGCTAAATAC
AAAATCATTTTTTCAGTCTATATACTAATGTCATTTACATATATTTAATCTCAATATTCA
AATAGATACCGATATATAAGTTCAAAAGTTAGACTATGCGCACCCCCAAATGATAATATC
TCTTGACTGGAGGGAGTGGAGCAGGCATGTAGCAATTAGAAGGTAATAATTAGTGCTCAG
GAGTGACAAATCAAAGCATGCTGAAACAAAACCTGAAACCTAACCTTTTTCATTTCACTA
AGTGGAAATGCTTTATCTGCCTTGAAGAAATCGACAGCTGCTTCAACTCCAGCAGTCGGA
CCTTCCCAAACTACATCCTGGAAACAAACCACATTCGTAAGAATGGTTTGGCTCAGTTAG
CAAAGGTATGAGACTATGAGGTGGCAGGCTAGCAGGTCATCATTACCTCCTTGTGTTTAT
CTGGCATGAACATACATAAACCAGTTTCCTTACTTAAAACTGCTACACCACCAGGTTGCG
TACAACCTGTAATGTACAGGTAATCACCATTCTGTCTGAAGGAGTACGGCACTATATCAG
TCATCATCTGCTGATCTGCAGATGCAATTATGGCCAAGCTCTTATCTGGTAAAGCATCCA
GAAGCTTTTTTCTTCTACATATGTACTCCTCACTTGTGATGCCTGGTGTAATCTCCTCAT
CAGCTAATAACTGGTTCATTGTATTACAATATTTAAGAAAGAGTGAAAAGAATCACTTTG
ACAACCACAAAGGTAAAAAAAGGTAAATGCATCAGAATTAGCACAAGGAATGTGGACTTT
TATGAATGTGAAGGGCATGTTTGGCCTAATAAGGCTTGTTCTGTAGACAGATTTTCAAAG
CTATACTTCTATATCTCTATATCTATATCTATACCTAATAATAAAGGAAGGTGTGTTTCT
CTGAATTTTTGGTCTATTCACGTATATAATTATTTTCAGTATCCGATGTAATACTACAAT
TCCTAGGCCATGTCCACAGCATCCCACCAATTGACCGGCCCAAAAAACGTTTAGATAAAG
AAGAGAACGGTGTCTTCTCCTTCTGCCGCCAGTCCACCGCGTACCCTCTTCTTCCTCCTG
CAAGTCCCCCCGCTACAGAGCTTGCCTCGGCTGACACGTCGTCCTGCTCCAGCGGTTCGA
CCATGAGGATCTGTAGTGTGGTTCCCGCGCCCTGTAAGAGATCAATGGTTCCCCATACTC
CAAGCTGGTAAGCTGCTAGACAGTATCGCCGTATGATATGCTGGATTGTGGGGCTGTGAT
GTTTTTTTTCTGAAGAAGACTAACGATGAACTCAACAGACAAATGGCCTTCGGTATTTGT
GATATACTACCGAAGGGAGTAGAATAAAGTGATTCTGGACTGCTGTAGTTAAAGCGATGG
CTTTCTTCAAATTGTGATGGAACTTCACGATAGTAAGCTGTTTTTGTTCCTTCTGATCTT
CTCCATTGACTTCTATAATGGTAGGTTGCTACTACGGGATTACCTGATGTTGCTTCATCT
CAGATATATCTTCAGATATTTACAAAAACCTCCGAAATTTACACCAGGTCATGGGATTTC
AAGTCGCTCGACTAGTCGATGAGTTGCAACACAAAGGTCAACTCAACTTAGTGTCGACTC
GAAAAGCGAGTCGCGACTAGTCGCAACTGCAGGCTCGACTCTTTCCGAGTCGCTNNNCCT
GAGCGACTCGCATGAGTCGCGACTCTAAAACCGTCATGCAGATGATAACCTTCCAGTCCT
ACTGAATCATAGTTGCTTGAATAGTTCCTCCCAGGGTGTTCTTGAAAGGTGCTCATCACA
TATGTCAATATACACGAATCCAAGTTCTTGATGGTTTACACCGGATTTATAACTTATAAC
ATTCTACTCAATGCTTGGGTTCAGACGGGTGATGTGGAGAGTGCATGGAAGGTGTTTAAT
GGTATACCAAGAGCTGACTTTGACAGAAACTCAGTCTCATTCAATCTTAAGGTGGTATTG
TTCTTGGAGATGAAGGAGAAGGGGTTGAAGTTGAGTGAGAAGTTTGATGTGCTGATGCCG
GGGCTTCGTAACGATAAGGGGAAGGCTCCAAAGGCCCGGAAGGCAGTAAGATATGACATT
ATGAAGTTCATCATCTATAATTACAAGCCGAATGGATGAAGTGGTGCCACGCTTCTGGCA
TTCTTTGTGACAAGAGAGTGCCACAAAAGCTAAAAAGCAAGTTCTATAGGACGGCGGTTC
GACCCATAATTTTTATGGTGCTGAGTGTTGGCCGACTAAAAGGCGACATGTACAACAGTT
AGGTGTGGCAAAGATGTGCATGTTGAGATGGATGTGTGGCCACACAGGGAAGGACCACGC
CCGGAATGATGATATACGAGATAGAGTTGGGGTAGCATCGATTGAAGAGAAGCTTGTCCA
ACATCGCCTGAGATGGTTTGGGCATATTCAACGCAGGCCTCCAGAAGCCCCAGTGCATAG
CGGACGG