Map Locations of contig_49068 (5823 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_49068

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64607 7 2928 bp MLOC_64607.5 Available Available LOC_Os08g23440.1, FRAME:-3, EVALUE:0.0, 13108.m02401 protein amino acid permease family protein, putative, expressed





CDS Structure of MLOC_64607






Contig Sequence (5823 bp)

>contig_49068 5823 assembly3_WGSMorex_rbca.fasta
ATTCTCTCATTTTGTTTCGTATGTAGTCTTCTAGTGGAATCTCTAAAAGGTCTTATATTT
TAGAACGGAGGGAGTAGTATTTATCGGTGGGAATTCTAGAGGAAGTTATTTTTTGTTGTT
TAGTTTATGGTCCTGCCTAGAGAACTAAGAATTGTTGACGATACGGGAGTATGGATAAAA
AAAATGAACGCTTCATCAGCCGTTAAACAACAGGACATGAGCGAACAGTTTTTTCTTGTT
ACATCAATTCCCACTCCCACGCTTAATTACCTGGTCCTTGCAGGGAGGAGATCGAAGGGA
GTTGAACCTCTTAATTCCCCTTCCTCTTCCCATCTCAACTCTCATGTCCCTGAGACAATC
AAAGGAATTTAACTCCCATATACCTTAAACTCCCATTCCCCATCTATAACTCCCCCCAAA
CAAACACGCTGTAACAGACCATAGACCGCAGGATCAAATGTTGAAAAAAAAAACAGAATG
AAGATTAAGTGGCTGGGAAACCGAGCGCCACTCTGATAAGCAATATCAACACTGTCATAA
TGCCTCTTGATCAAGCAATACCAACACTGTCATAATGCCTCTTGATCAAATTAAATAGCA
GAACAACGTATCATCCGAACCATGGCTAAGCCTAGACATTTAGACCAGTAACAACTGTAA
AAAGAGATACCCATGCTGGGATCATATCGCAAAACCACAGAAAATACATGCAATAACGGT
CATTTAGACATATGACGTTTTAGCAGCTCAAATTGAACTGCTAAAACGGCATACATTACG
GTACGGTCATATATATTATGGTACGGAGGGAGTATATCAACATAAGTCATGTTAAAGATC
ACGTAACATATCAGCCGATAATCCACAGATGCATAACATCGGGCGTTAACAGAATATTCT
CTACTTATAGCATTGGTATTGCTCCTTCCAACAACTTGTTGCAGTCTCTCAGCCGTATAC
AAATCACAGAAAATAGCAAAAACAGGGACACTGTTGCTACTGTTTCAGTGGGAAAAAAAA
TGGAAGTTTCTAGAATTGATTTGGAGAACAGGGCTACAAAATTTGTAGTGACCAAGTATT
CATCTGTTGTGTCCTGAAAAGGAATGAAGATCTATGGTTTACGTACCTAATATGGCAGTG
ACAACCCAGTGCATCCCATCTAAGGTAGCCGTCAAGGTGAGGGCTTCCAACTTCAGCAGT
GGAATCTGCACACATCTGTGTATTCATTCTGCTACAATGGCACAACAACTGGATGGAGCT
CAGACTGTACGTATTTGATCAAGTAAAAAATGTGACAACATCTCTTCTGTATCCCCTAAC
TATCAACATGCGTGGGACGTTCTCTACAAGCAGGTCCATGTACTCCATGTAGAAGTATGC
AGGGTGATTCAGCGGTGGCGGAGGGAGGCTCACTAGCACCACAGCTGCCATTCTGGAGTA
CCTGAGTATCGTCGAGTTTAACTTCAACATTGTATAGAGGAATTTATCGACCTTTTGCTC
GTTCACAACAACTTGCTTTCCATCCACCATTTGCGGCCGTCCTTCTCTTTGTGTGGTTTC
CTTCATCTCTGAAAGGTATGTGCTGATCCTGCGCCGTGCACTTGTGTAAGCCTCTTGGGA
ATCATCTGGCTGAGCACCACTGCTGCTGCTCTCCACATGAGATTCCCATGACTTCATAGT
CACAACAATGACCTCGGCATGCATCCTAAGATCATACAAAAACTTTTTGACATCAGTCTT
TAGCTCTTCAGCATCAGTGTCCTCTTCAGCTATGCAGAAGACTTGGATCTTGCAGCTTTC
AAAGGTCGCTTTTGTGAGCAGGAGCTGAGACAGAAGAAGCATCAATCCTCCATCTCTCAC
AATCCAGTAGAGGTCAATAGTACCATACTGTCTCTGGAACTCATTAGGCCACTCATCAAG
ACCCTTCACAATAACAACTGCCTTGTTAGCAATGATGCAATCATTTATTATACTGACAAA
GGTTGATGGTATCTCTGTCAGATTCTCACGGCGCCAAATCTCAGGGTACCGCACCACAAC
AATATTAGGCTTCAAATTACCTAGGCCCATCGTCTGAACAATGCTACGGAAGCCCTCGGA
CATTGAAGGTGCTACAATTATCTCTGCAACACCCTCACAGCGTTTGTACTCAATGTAGGC
CTCCAGCTGATGACAGGCAGTCTTAGCATCCTCAGCCAGTTCATGATAATCACCGTCAAT
TGTCGAGACAAATATTGACATTCCACGGCCCTTCTTCTTCATACAATTGGCAAAATCAGC
AAGTTTTGGATGACAAGGGACATTTTCTGGAAGTTTACCCCAAGGGCGGCATAATATCAG
AGGAATGGGGTACCAATTCTTAGGATGAACTTGGTTTGCTGTGAGAAGAACAGTGGGGTG
AGTGTTAGAATAATGAGTTTGTATAGATTACTAATGACTATTTCTTTGTCATGCAGAAAA
TCATACCTCCTAGCGATCTGAGACTCCGTAGTGCCAACTGAAAATATGCACTCTTGAACC
CATCTCCCCAATCTCCAGCCTTCCCTTTTATACTCACATAATAATAGATGAGGCTTGCAA
GGGCAAGGGAGATAACAGTGAAAGACCAAGAGATCAAAAACATGATGACTGAAATTTGAG
AGAAAGATTATTAAGTGGAAAGCACAACTATAAACACAAGTGAGGGTGCATTTTAACTAG
CTGTGGACCACAAGAAATATGAGGTAAACAAATTGGATTGAAAAATCATACATGTGAACA
GAATTCTTCAATCAAAATTTACAATAATGCCTAAGTCAGTATACATTTTCAAGTACATAA
AATAACATTCAGTAAAAATATTACAGGCAGCTCAGGATGAATGTCATGGATGACGGAATA
AAACAGTGAGAGTCAAAAGGCGTACCAACGCAAAGTAATGCACCAACAAGTGAAAGACTC
CAGTGGTGAAGTTTCCATCGAGGGCGCCAACTAGGAGCATCAAGTAAGTCAAGCAGAAAG
CATGACAAGTTCACACCAGCATAGCACAACAGAAAGAACATAGTGATAGTGGGTGTAATC
AAGTCCAAGTTCCCAATAATCACACATCCAATACAGATTAATGCTGTGAATAAAGTTGCT
GCGTGAGGTTCGGCTCCTTCAGAAGCCTTAAAGTAATTAAGGACTGGAAGGATGTCATCA
TTTGCTATTGCTGCTAGTAACCTTGGAGCCCCTGTTAAACTCTGCAGCGCTGCACCTAAA
GTGGACAGGATAATACCGATGTAAATCACTACTGGAGCAGGCCATGCCACTGTAGCTGTA
AGAAGCCTGCAAGTATTAAGGATATTTATGAGCTAACCACACAATAACTCAGTAGTGTAG
CAGCTTATGGGACTAAGACAAAACTGCAGCCTACACAGCCATGCTATCAGAACGTAGTTG
TTCGATAAAAGAATATAGAGACAAAACAGATTCAACAAATATGTGTGTTATATATAAAGC
ATGAATATTGACCATATAAAGCAGATTAGTCGATAGAACTTTCTTGTTAGCTCAAGATGA
GAAGAAAAACAAACAAGAAAGGTTATGACTGTAAGCATGGGGTATGTGCCCTCAAACAGG
ACCTACCCAAAATAACTTTATGTGCACGATGATGCCCATAACAGCCAGAAGAATAGCTGT
GGTGCAGGATGCCCATAACAGCCAGAAGAATAGCTGTGGTGCACGATGCCCATAACAGCC
AGAAGAATAGCTATGGCAGTGAGATTTTCTCTACCGAGAGAGCAAATAACCATGCTCTGA
CGACATTAGAAATGCAGAACTCAAACATAAAAAATATTCCATGCCCTAGAGAACATATTA
CCTAAATTCTAAAGTGGGATCAATGATAACTTGCAGCATTGAAAAGCTCGCACCTATCAG
TTAGAAGCTCTTCTCGTGTGGACAAGGCTCCAAACAGCAGCACAGAAAACAAGTACATAG
CAGTTGTTGTGAGAGTTGCAGATAATGTTCCAATCGGTATTGAACGTTGTGTGTCTTTCA
GTGAAGCAGATCGATTTGAGCCAGCCATAATTCCAGTGACTGCTGGGAAAAAGAGACCTA
CCAAAGCACTGAAAAATATACAAAAATGTGTCAGCAAGTTGCATTGCATCTGCACAGATA
AAGAAGTCTTGCGGGCCCATAAACTTTGTTTTCAATAATAGAGTTTGATTTATCTCCAGC
CTTCAACCTCGCAAGGCAGGGGGGTGGTTTCATTGTTCCATCAAAGATGGGCGGGGACAC
TGATGCCCTTTCTCTGGCTAGAGACTATCTCATCAAATAGATATGAAATTTGCTGCTTGG
GTTTGTCTGAACTAGGTCAATAATGGTATTACAATCCATGTTAATGCACCCATCAGGTTA
TGTATTTACAGATGGGACAAATTATGTATGTTTACCGTGTGACCCTGTTAACAGAAGTTG
CTGTTGATATCAAGTAATTTGGTCAGTTAGACCAACTTGAAGCCAATCAAACATCCTGGA
GGTTTAATAACTTAAATGAAACATTTATGTGACTAAATCGCACCTTGCACCAGGCAGATT
TCCACTTATTTCAGTTTGCACCAGATTTCGCCAAAAAAATAACAATTTGCACTGGGTCCG
GCACAATAATATCTTTTAACTGAAATCTGTAAGTATATATTTCGTCCCATAATACACATC
CATGAATTTTCATATCAAATTCTACAAAACCTGATGCAAATTGCAACATTATTATGCAGA
TCTGGTGCAAAGTGAAAACTCGTGCAAAACCTGGTGCAAAGTGCAATTTACTCTATAAAC
TTCAGGGCACACTGCAATTCTGACTAAAAGAATGAACATGCATGTGAGGACCCTATTAAA
ATATAATAGGAGTAGGTTGTCGCCATGATTGTACAAGTTCATAGGGTCAAGTGAAAAATT
GTGCAAAATGACTAGAGTGTGCATGAGATTCAACATGGATATACATGGAATGATAGAGAA
TTTTCAAGTTTTAAGAGATGATAGAAACTTACTTGAAATCCCAATATATAGAACCATCTG
GATCAGGAACTCCTGCATTGTTTGTACGTTGATATTCTGAACCCCAGTTGTCTCTGAGTG
AGGTTAGACTCAACCCAGTGATCCCCTCTAAGTAGGAAAGCCAGCATTACAATTGAATGC
ATAAATGCATAATAATGATTATCCAAAATATAGGCCACATGGTACTTACTTGGAGCATTG
TGTCTTGGTGCAATGAAGACACCAAGATAGATGCACAACAGTGAAAAGAGCACTGGTATT
AAGAAGGCAGGTGCAACCTTGTTGATGATTTTGACACCACCGAACACAATAAAACAAAGC
AGTATGGTCACAATAACACCATATACTTGAAGGTCATGCAAGCTGGGTGTCGATATAGTC
GCCGTGCCAGCTGTTGCTGTACCGTTTAATAATGTATTGTTCACCGCTGTTACGCTCTCT
GCATTATTAAAAAAACTGTGAGTTAGTCAAATCTATATCTATATCTATACCTACTATTAA
AGGACGGATCGTTTCTGCCCGTACGTCACGTCATTTTGCAGAAAATCCCCTGTCTTTTCC
AAACCATTTTTTGTATTTTACACAAAACCCCCTGATTTTTACGCTAAATAACCCGCGGTC
CATATTTTAGTCACAGCGGATCGTTTTTTATAATTTTATGTAAACCCCCCTGACATATGC
ATTAATAACCCCGGAGTTTATTCAGAATAAATATAAATTTTCAAATAACAATATCTTTTA
AACCGTAAATCCAAGTTAAACATGTTATATATGAAATTTGATTAGAAAAACGTGTAGAGT
TTG