Map Locations of contig_49063 (10472 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_49063

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64602 2 2550 bp MLOC_64602.2 Available Available LOC_Os11g08330.1, FRAME:-1, EVALUE:0.0, 13111.m00877 protein POLD1 - Putative DNA polymerase delta catalytic subunit, expressed





CDS Structure of MLOC_64602






Contig Sequence (10472 bp)

>contig_49063 10472 assembly3_WGSMorex_rbca.fasta
TCGCTCGCCGAGGCCTTCCCCATCACACCCGCTGCCTGCTATGCGACCAAGAGCCGGAGA
CCATCCGACACCTGCTGCTCACCTGCCCCTTCGCGTGGCAGGCCTGGCACGAGGCCCTAT
CTTGGCTGCGCCTACTGGCCCCTCCGCCGGAGCATGATGTCTCCATCCAGGACTGGTGGA
TGAGGGCGAGAGATGCCACACCACCATCGCTCCGCAAGGCGCTGAGGTCTGCCGCGCTAC
TGGTGCCCTGGATGATCTGGAAACATAGGAATGTGTGTGTATTCGACCATATTACTCCGT
CGCTCGACGAGCTCTTGGATAGGATCAAAGATGAGATGAGGTGTTGGGCTAGAGCCGGGG
ACAAAGGGCTTAGGGTNNNNNGCCCCCATCCTGGGATGTCCACTAAACCCCTTGTAACCA
TGCTGTAATCGCCTCTTAGGAGGCTGTAATCCCCCTTCTTTTCAATACAAAGAAACGCAA
GGCTCTTTGCGTTTTCTCAAAAAAAAAAATTTATCTACAAATTTAATCAAATTTAAAAGT
TTTGACATTTTAAAAACGTAATACACATTGTATTTTGAAACAAAGTGATTAGGTTTTTTT
AATCTAATGGCGCAGCAAAGCGCGCCCAGTCCTTCTAGTGGGCAGCCATTTCATAAGGAG
GTCATTATACTAGCATCATGAAGCATCTGACTACAAGAAATAGTAACATCTTGAAGAACA
TGGTCCTTTTTTACGGAATCATAAGAACGTCAAGAGTAAACTTCATGATTGTAAGATGGG
GTCCTACTATCTATTTAAAAATAGATAGCTGATGATAGTTCATAGATTTTGTCTTTGTTG
CTTTACTTATGTATGTGGCCACACAAGAAAGGATCAGGTCCGGAATTATGGCATACGTGA
TAAGAGTCGGGGTAGCACCAATTGAAGAGAAGCTNNNNNNNNATCGTCTGAGATGGTTTG
GGCATATACAACGCAGGCCTCCAGAAGCATCGATGCATCGCGGAAGATTAAAGTGTGCTG
ATAATGTCTAGAAAGGTCAGGGTAGACCAAACTTGACATGAGAAGAATCCGTAACTTGAA
GAACTGGAATATCACCAAAGAACTAGCCGCGGATAGCTATCCATGTGCCACAACAATGAC
TAGGTTTCAAGATCTTATGGGTTTCAAATCTAGCCTACCCCAACTTGACAGGGCTTTGTT
GTTGCTGCTGCTTTACTTATGTATCTCCAAACTTCCCTTCTTACTGATATAAACTTATAG
AGTGGGATATTCCCCCCTGTTTTCCCTCAAAACAATGTTACAATACCAAGTGAATGAAAA
TAGTATTTCTGTAGTCACCTTAATAAATGTTCCACTAATATATTCTGCAGCTTCTCTTCC
CAATTTCATTGCGTCCTTGACTGTAGAAACACCAAACTGTACCATCACAGAATCGGTATC
ACCATAAATCACCTGGAATGTCCAAAAGAATTTGCGTCAACCATCAGAACATGAATGAGA
AGTGTGAAAATTCCAACAGATAGACTAACCAAGTGCATATACAGGAAAAAGGAGCTTGCA
TACAGATCGAAAGTGATTATTATGCTGATATCTAGCCTGCAAACTAACTGAATGTGTGGA
AGCAAGATATCACATGAACAAGGTCCTGAGGTTGCTACTTGCATATAAAATTTGGGAAAA
ATAAGAAACATGCCACTGCAAAGTTGTATTTTGGAAAAATGACACCAGCTGTGAGAATAC
CATGTGGGTCCAGGTCCCACATGTCATTTGAGACTAATGACACTTCACAAAACTGCCAGC
TTTGCAGGGACATAACAAATAGTTCTGAGCCAACATTGTGCTAATATCCAGCCAAAATTA
ATGTTATGTAGTTCCGACACTCCTTTATGGGAAGGATCTGCCACCATGTCTCACTGAGAT
GGCCAGATCTACAGGTAGTAAATGCTAAGGAACTGAGTGTGCAAATACAAGTCATCGGTT
CGAATCTGACATAGAATGCCTCATGGATTCATATCTGGTGTATCAGATGGAAATGGGTAA
CTGAAGGCTTGACAACTTGCTAATGTAGAGCAGACAAGTTAACATGGAATATTGCAAGCT
TATACAAACACAGGATACAGTAACTGATAGTACACCTCTGCATTATGCTCATAGCCTCCA
ACTGTTGTGAATTTATCTTCAACAAGCTTCTTTGTATGCTCAATCATCTGTCTACCTGTA
GAATAAAAATGCTTCAGTACCACACAATTCAACATGTTTTTGCATTTTTCAGGTTACTAC
ACAATGTACACGTGAACTATATTAAATGAAGAATTCATGCTCACCATAACTTGTAACACT
AGAAGAAATCTCTAAACAGGGCAATTGACCAACAGTAGCACCAGTAAAACCATAAACTGA
ATTTGCACTTATCTGAAATAGAACCATTAAACAATGTCAAGATCTGAGGAGTCCGTGTTT
TATGTACCACTGTTTGAGGGGGCCAAGAGTGTTAGGAAATAAATATTTAAGTACTTTTAG
GGCAAGCTGGCGACCATCAAGAACCGCCCTTTCGAATGGGTCCTTTGCTTCCTGAAAAGG
TTACTGGTGATTATAATATAGGATTGAAGACATGTAATGCACAATGTTTAGCATTTACAA
ATCTAAAGAGTCTGGACTATAACTTTCCCACAGTAATAACATGGGAGAAATATACCTTCA
AATCTGCTTTTGCTCTTTTTCGAGCAGCCAACAGTTCTTCAAGGATTTCAGGAAGTATAC
CCTGATATTGGATATTGGTTAGGGAACACTGCTTCTGTCACGAAGATTGCTTACCGTGCC
AGGAAACAAAAAAATATAATAGAACATAGAAGTGGTACCCCAGCCCCGGTCCATGCACAT
AACCGTCACTTTTTCCACGGAATTGTTAGAAGAGTCAATTGTCGGGAAAGAAATACCTTT
TGCAACTCTGGTTTCACAAATATTTCACCAGATGGAGTTTTGTAGAGGCTTTCTGGAGGC
AAGTTGTGTTTACGGACATCCTCAGGGGGAACCTTAAAAACCATTTGAATACACATTAAC
CCAATTTCCATACAGTATTGCTTTTTTAGATATTAGCATAGCAATTAAAAGAATTATGTT
TACCAAAGTGCAGTAGCATAGGTTATGGGCCATCATGATGGATGGATACAGAGAAGCAAA
GTCCAAAGTTGCAATGGGCTTCTCATAAAATCCAGCCCTTGCCTCCAAAACCTAAATTGA
AGGGTGACAGATGTCAGAAAACAAGAATCATTGGACAATAAAACAGAAAAAAGAATTGTA
TTTTTCATTGTATGACCAGTTTAGAAAATGGAGAAGTAAACAATATTGTTGAATGCTTCC
TTACTTCCCAGGTGGAAAGAGAGTTGGTATACTCAAATATGTGTTCATGGTAAGCAATGA
AGATGCGTTACACATGCATCCACAGTAGTTTTTTTACATTAGTGGTGATAACTTGACAGT
ATGGAAATTTTACTTAGCTCACATAACAAATATCTATATGGTCACTTCAAGGCAAGCAAT
TCAAAGGGTCGTAATGTGCAATTGATGTTTTCGTGGCATGATAAATAGGAGTATGTAGCA
AGTGTAATAGCTGCTACTGCAGCATGACAAGAAAAACAATGAGGTAGGAAAATGCAGATC
ATGTCCATCGACTTACAGTTGCACCCTCAAAGGTATCTTGCCCAGAACTTTGGCCCTTTA
TGTTTGGTATAACAAGGTTTCTCTGTTTTGCTTTCCTCAGTAACTGTGAGAGGACCTGAA
GACCAAATTGAAATTCCTGTTAGAATGCTGAAGTGGAATATATCTATTGGCAGAATTTGA
TGTTGTTGTCACCTTAATGCTCTGTCCCCTCGAGAGCAGGAAAGAAATGGGAACTCCTGT
GACCCTCGCCATCTCTACGTAGTTGTAGATGTACATCAATTTATCTAACAGTCGTTGTGG
AAGATAAGCATCCTGTGTGTACAGAAATGGAAAAGAGCATGTTGGAAACATACTTCGAGG
AAAGGGCAAAAGGCTAGTGATCAACTCAAAGATAGGAGTACAAAATTTACAGGTCATTTT
GCACAACTATCATCCTAGCTGACAACTAAGACACCGGCAGACCTACTGACCAGAGATAAG
GAGCAAATGTTTCCATGTACTGCAACTGTTTTTCAAAAGAATTGTTGCTCATTCATCAGA
CGATAACATAATTTTGGGGAAAGTATACATAATGCAAGTTGCAAGGTAAGTCTTCAAGTG
AAAGAGATTATTAGACAAATAAATATTAATATGTATGTTGTCCCGATTCAAAATTATCTT
TTATCATTCTAGACATCTAGATCAATGGTAATCTTGCCTCCCAAACGACTACTGTGTTTA
GAAAATGACATCGGTGAATCATAAAATTGCAATCTCGGACTAATGATGGTGTTGAAAGCA
TGAACCACAGTCCACTAGGTACAAATCTTATGATAAGTGTGAGAGCAATATATATGTTTT
AAGCTGGCCCAAATTAGTCTGAATCCTTCTGAGAACCTACAAGGACATCATTTGAAAAGA
AAAGAAAAAAAGGAAATAAACTCAAAGCCCGATCAGATATGTAGAACAAAATGCCCATAA
CTAAGCCAGCTACTTCATAAGCACATTTCAGCAGTTTATTAGCAGATGACAAAGAACAAT
TAAGCTGACCTTCAAGCAATAAACCGCAAGCCGCCTTCGTGTCTCTGAGTTTCCATTTTG
AAGATCAGATATGATTGAATGATGGACATCCTCTTTCTGCGCATAAAAATCTAGTATCAG
AACAATAAAAAGAAAGAGTATTAAATCAATATACTCAGTCTGTCTCGAAATGTAAGACGT
TTTTTGACACGTTTCGAGACAGGGGGGTACTATAGAGCCATTTGCATCAAATTAGGCAAA
TTAGCACAGTTTCAAGTTATTTTAGTGAAGTCAAACTGAGTTCCAGTCCGACGTGTTCTG
GACCATGGTTCACAACGGAATAATTTGGTAGGTTAAGAGTCAAAGGTTAGAAATAGTGCA
CTTGTCCTCGACAACTGGTAGGGCTCATCCTTGATGTGTTAGAAAGACTCTGAGACTGAG
GGAACTTCTAATTATTTCATTGTTTAATTCAAATAATTACATGATAGAACTTTATATAAG
CAACTTAGCTTGTCCCACAGGAGTAAGATCTTCACTTTCTAATAAACTTTTATCTTGATT
CCCCTAACTAAACCAATCTCCTTTTCTAAGAGCATAACTCTTCCCCAAATTCTAATTTGT
TTGATTCCATCAGTACTAATGAACAGATGGGACTTAAGGCATGCGCCCTTGTATAGGCAT
AGATACCATTTTAGCTCACAACACAACAAGAGTTTGAATAATAACTGCATGAATATGAGT
GAGTAGAATACTTGGGATGCGCTGACAGCAACTAAGGCCACTTAAAATGGTTGGACTTAC
TTGCTCCCCTAGAAAATGTGCAGATACAGAGTTCAATGAATAAGAACTGAGCTTGTAATC
CCTTTGCATAGCCTGCCCACATGCAGAAAGTAAAGGGAAGATGAGATACTGTCATGTAAC
TAAAAGTAATAAAAACTACTGGTCTAGTTGTTGTGCAAAACAGTAGATCACAACCTGCAG
AAGATCAAATTGTACCCTTCCCTCCACTGTTACATCTTTACTTTCACGCATACCATATTG
CCTGGATAAGAGTAATGAATACGCAATTAATAATTCGTTCATGTTCTACTAGTAAATTCT
TGAGTTTTATTTGCTCAATGCTATGTACAGTATATGCCATTGCACCTTGCAGGGTCATAA
AATCTTGTAGCATTAGCATGTAACAATTAAGGCAGGGTGCAAAATTGCAAAGCATAGTGA
AGTCCATAATATCATATGGTATTTCCCTAATTATCCTTCATTGCAAAGAATGACATATAA
ACAGCAAACCTGGTGTTTACTCAAAGATTGCATTGTACAAAGCCCATTATAGACCACAGA
AAAAATACAGGGGATATCTATGGATGACCATGTAAACATGAATGCAGAAAACTTGTGGAT
AAAATATCTGAGAATGGCAATGCTAAAACTTACTAGAGGACACTGAAACAAGGATTAATC
AGTCATCATTTGTATCAAATTAGCATGATCAGCATATTTTCAGCTAAATCTGAAATCAGA
AATTATACATCAATGGAACCAATCAAACATGGACTGCATATGTAAGCACGCAAGTTTATG
AAAAAAGGGAAGCAGCAACATAGTGGCTTGCTGGAAGGAACCAAACAGAACTTGAAGAAT
TGCACAGCTATTTAAACATAAATGGGCAAACACAAATGATACTGAATACTTGTTGTCTAC
AATGCAATAGGGGCAAACTAACATGGACCAGAGCAAACAAATATAAAATGCACAAAGACT
AGCACTTAAAACAGGTAACCTTGAGTTGAAGGTGGTATCACGGACACGGACACGGCTATT
TCTGATTCGACCAAGTAGCGGAAACTCCACTATCTTGAGAACTTCAGCTCTCTGTAAATA
TGCAAAACCATATTGTACTAAGAGATAGAAAATTGCCAGGTTGGGCAAAGAGTAAGAGTG
TTGCGAACTTTACAAAGTTGGTGTACCTCAATAAGATATGGCAGGTCAAATTTGCAGATA
TTGTATCCAATTATAATATCAGGATCTGCCTCACGTATTAAATCCTGCAAAATACCAAAG
CAGAACCAGGTTGGTATCAATAAAGTTACTTGTCAGCCATCAGATATGTATTTAACTTTG
GAAGAGTGTAATACTGGAAAAAGAAAGCAAACTGTATATACAAAGAAACTATCAAACAAA
AACATGTTTATTAACCATGGATACAGGTTATATCTGTATACAATCATAGATCACAAAAAG
AACTGACACTGTGAACTTAGAATGAGGCAACACTCACCCTCCAAGCAAGTAGAATATCTC
GCTCTGTGTCAAATGACATTACATCCACTCCGACAATGGGAGAACATGATTTAAGAGTCA
TGACATTCCGTACAAAAGGCTGGGCTTCGCCTTGAAGCGTGAGTAAATTAGCAATCTATT
TCAATCCAAGGAAGCAAGTCAAGATAATATGCACATAAAGGCATTCACATCGGAAATTAA
ATGTGGTAGCTTATCAAAACACAAATGTAATGAAATAAACCTGAATAACCGGATCATGAG
TTGGTTCTGGGAAGTGTCCTTTGCGACCAGCACATTCGATGTCAAAACTTAATATGCGAA
AGGGGGCCATCTTAGAGTATTCCCCTTCAGGAGCATGGCTTACCAAATCTGAATATCTGT
TGGTCGACTTAAGGAATGACCAAATGAACAATATCACGATTTAGAAATAAGGATGGAGGC
ATTAAATTCAGTTTGGATACAGGCAATCCAACTCTAGCTGGCAATAGGACATGACTCGAG
TTGCTTTGCTATACTTCCCAGCAGGAAGTTCAATCCAATTGCCACCAACAATGTTGCAGT
CAATCATAAAGCGAAGGGCAAAGAGAATGTTGCTTTCATATGTCAGGAAACTCTTTGAAC
CAAGATTGCCAATCGATATGCCCCTTTCAAGGATACCTATAATGCACACAAAAAATATGC
CAATTGTGGTAAGCCGTAAAAATACGATGATGCTGCTAGCCGCAGATAAAGATTCACACA
ATAAGTAGCAGACAAGCAACTGAATATCTTCTTTAGGCTATAAAGGTTATTCATTGAAAA
TAGAGGTAACGAAGTTAATTGACAACAAAGGAAAATAAGTGTACTGTTCTTAAACTACCA
CTGACCACGACAGCTAGCAACCATTGTAGGTAGGGCAACTACTATCTTGAGGAAGGACTG
AGATTTATTTGGCTGGTAGTGCATAATTGTCTGCTTCTGCAGAAGCTCAACACTCTTCAC
AAATCTTTGCACACTGCTATTCCTATTTGATTCCTTCATCCTCGCCTGTAGTACATTGTG
AAGAATGTATAAGGAAAGAATGAACTTCCAAAGTACCTTCATTGAGCAGAAGGGTCAACT
TAAAATAGAAGTAAAAAACCTCTAGTGTTTGTTTGAAGCCTGAAATATCATCAGGGCTCA
TTCCTGGCGGGCAGCTGATGTAGAAATATGGTTCAAACCCGTGCACCTGACAGCACACAC
TGTGACCTGAGAACATAATAAGATAGTATTACACGTCAGCAGAAGCCACATGATAAAGAA
TAATCATTTGAAGACAGAAACGTATAACCTTCTCTGGTGACACCAAAAATCCTGATGATA
GCTGCAGGACCAGAAGAGTTGGGCAGAAACTCTTTGTGGCTCTCACCAATAACATAATCT
ATATCCAGCTGCTGAAAAGCTATAAAAATCAAACAGAATAGAACAGCATCAATAATAAGA
TTAAGCTGTGTAGGTAACATATAGATTTATCCAATTTACATTAACAAAACTACTAGCAAC
TATTAGTACTATGACAAGTAGTCCTTCCAAAGCACAGCCTGAAACTTCTATTTCATTTTG
CCATCGGAGGATGCGTCATCTCCTCTTTGTGTCCCGATGTAATTAACATATTATAAAATC
ATACAAAGTGTGCAGACTGTATGGAGGTTCATGGACCCTTATAAGGGAGAGGGACACTTC
AGAGCCCAGTTCATGAGCTTTAAACTTTATATAATCTGTAGAAACTAGAAAGCAAATCAA
CAATTATACACGCATGCAGTTATGTGTATCAATCCAAAATGATAATTATTTGAGACCCAA
TGACACAACCCAGATCGCGAGCAGAAATGTGAGAAGCAATGTGAGAAGCGCATCCAAAAC
AGGGGAGGATTTTATGCCTCTTTGAATATCAAAGCTTTGCTAATTCCAGACCAGAAATAA
CTCCATTTGACTTTTGAATATAATCTCACAACCCACAATTCATCAGTTATAGGTTTACAT
TCAATCACCTCCCACGCATCCAGTGTAAAACCATTTATTTTTTAGTATAAAGCACACCTT
CAAAAGGTCCATATCCAACAGCAACAAAAATAAAGTTATTAGTGCTCATTAATCCAATCG
ACACATCAACCAAAATGTGGAACTTAACTAAACCTAAACTGCGCTGAATCGCCAGGCTGT
ATGCGCAAAATCCCAGGGCTCCCGACTCCAGGCATCAACGAGATGACTTCGGTTAAAGCG
GCATTGTGGACAAAAGAACACCAAACCCCTAGCCAATTGGCAGTTACTTAAGAGCAAAAT
ACTCGATCCGCCCCAAGTTACACCTTCCACGCAGACCTGAACTAGCCAGGCTCGGGATGG
AAGACGAGCGGGTGGAGGGAATGGGGCCGTACCGACGGAGCGGGAGCAGCCAGAGACGAG
GTCGGCGGGGAGGGCGGGGCGCTTCCACCTGGAAAGACGGGAGGCGAGGGCCTCGTCGCG
GTCGAGCAGTAGCAGCGCCGCCTCGTCCTCCGCGAGGATAGTCTCGTCCAGGAAAACGTC
CTCGTCCATCATATCCTCCTCCTCCGCCGCGGCGGCGGCCGGCGGAGGCGGCTGTGGGGC
GCCAGGCGGCATGGGTTGGGCCCGCTTCGCCGCCAGCGGGGATGGCGCTGCGGGAGGCCC
CGCCCGTCGTTTGCCACCGCGCCCGACTGAGCTCATCGCCGGAGAGGGCGGAAGGAGAGA
GGGGGTGGGGACTGGAGGAGCGGAAAGGCGGGGAACGGGGGGAAGTGGAATTGGGGGTTC
CCGCCATTGCTGGAGATGTAGGGTTTATACGGGAGGCGGCACCGAAATACACCAACCCTA
TAGCGTTTACGTAAACCGGTCTGGCGTGAACGTTTGGGCGCGGTTAGTAGGGGTTGTTTG
ATAGTTGTTCTCGTTCTAGCATAGTTGTTCCCTTTTAACACATGTTAAGTTGGGACATAT
TGTATGCATGCATGTGTGATTGTTTTGTAGTGATGTATTTGTTGAAACATGTTGACTTTA
GACTGTGTTTGGTAGCCACTGCGGCGGGGTTGAAACATGTTGACTTTAGACTGTGTTTGA
TAGCCACTGCGGCGGGGTTGAAACATGTTGAGTTCAGGTGGCGGGTAGATCGACGGTGAC
GGCGGGGTAGACCCTGCTACTCCACCACCGTGACCTCGTCGGATCCGCAGCCTCACACCG
CCTAGCGACGGAATCCGCCCGAATTCACCGAACCACCAGCCTCACCTAACTTGCACCTGC
ACCAGATCCAGGCGCCGCTGATGGCCACCGGACAACGAAGAGAAGGAAGGCGAGGTGGAG
GGGCTGGCGTTCTGGAGGATCAGCGACCCGGTGGCACGAGACAGAAGAGGAGGAGGATGA
GCGGCGGCGGCCATGCGGTGGAGATCGAGGAGGAGGAGAGAGGGTGAGGACCGTCGGGGC
TCGGGAAGGGCGCGGCGGGGCTCGGGCGATGCGCGACAGGGCTCGGGCGAGGCTGTCGGA
GCTCGCGCGAGGCCACCGGGGCTCGGGAGGGG