morexGenes - Barley RNA-seq Database

Contig contig_49033
Source Contig contig_49033
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_49033 (9422 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_49033

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64588	3	3260 bp	MLOC_64588.1	Available	Available	LOC_Os03g51230.2, FRAME:-1, EVALUE:0.0, 13103.m05570 protein SNF2 family N-terminal domain containing protein, expressed
CDS Structure of MLOC_64588

Contig Sequence (9422 bp)

>contig_49033 9422 assembly3_WGSMorex_rbca.fasta
TACCACGTACCATCAGCTTCGTTTTTTNNNNNNNNTCACGTAGATATTTTTTTGCTACAA
ATTTTGTTTTTTATTGCAACCGTAAAAAAATTGCTGCATCGCATCGAAATTTTGTTGCAT
AGGAAAAAAAATGTTGCATGCGAATCCAACGGTGCAGACGCGCGGGGGTCGATGGATCCT
GCGGCCCGCGCACGGCCGGCCGAAAGTTTGGGCCGACGGGCCGGCAGCACAGATCACTTC
CCATTAATTAAGGAATGGAGAGCTGTCTTGTCTTTTGTAACGCGCTAAGGGACCCACTTC
CATATCTCCTCGGCCCTTTACTTGCTGCTGCTGCTGATGGTAGGGCCCAATACTTTCTTT
GTGGGGGTCCAACGTTTCTTAACAGTCAAGTGTTCGCCAACACTTTCTTTGCCTTTTTCT
GCCACGGTCCACCAAACACAACGCGCTAAACGTACGAGAAATAAGAAGAAAATGGGAAAG
GTGATGTTATTGTGATGGGGTGCCTTCAGAAAGCATGACAAAACACAAGTCATTTGTGGT
AATTTTATATTTCCACGAAGACGACGGGTTTAGTTCGCAAGCAAGGCAAATCTTGACAAA
AAGGACTGAAATGATCCATACTGTATGTCATCCTCGGCCAGCATAAAATGCCACGCAAGT
CGATCACAATTGTCATGCTTTCATGAAAGTTCGCTGGTTAATCTGGTCCAAAGGAAAATG
CTCATACTCACTTGGCTAGGCACGCCTTCGCAACCGTCCGATCAGCTTTTGATCATGCGG
CTCACAGCAACCTACCATGCACTCATTTGCAAAGCAGCTTTTGTTGCAAGATCCAGGCTT
TGTTGCAGATCGACCAAGGCGAGGCTGCTCACATCAACCCTATGTCCCAATCCCATAGAC
TTTGTTGCAAGACACGCGAGTGCAATACATGGTCTGGTTTAGATCTACCATAGCCAGAGG
CTGTTTATTGCGGACACACATAGATCTGAAAGTAAAAAACCGCTTTCGACCAAGCACACA
ACATGACTAAGAGCGTGGGCAAATTTTTCACTCGTTGTGTCCCCAGAACCCGTGTTCGTG
CATGCATGAAGGAAGAGACAGAGCGCCTGCATTCCGGCTATTTTAGTCGGCCCAGATGCT
CCCCCAGCTAACTGGGTTTGCCTTGGGGCCGCCGACGCATTTTTTGTTTCAAACGACTTG
GCGGCTAAGCACCTGTTCGGAAATGCTTCAGCTCCCAACTCTACAGTGAAACTAAGCAGC
GCGCAGTTCATTTTTTCAGTGCAACGATTCTGGGGCTCCTCAATGCAAGCGCCGACAATG
CCCCAAGTCACCGCCAAGAAAAGACACAGCATTGCATACTGGAGTAACAGTCTCATTTCC
AGACTCCTTCAGCAGACTACTACTACCATAACAGTCTTAACATAGCTACTAGGGTGGTTG
CCTTGGATGAAGGCACGAGCTCGAGTTACATCGCAACACAGCTCGCCAAAGGATCGATCA
GCTCCTAATCTAGGGGGTGCGGTATACACTGCAACGCCCTGTCGTCCATAATTACTTAGG
GGGGATAGGCCTTTGACATGTCCACATCATGTCACAAAAACACAGGCGGCGAACACAAAA
ACACTGGAGGGTGTCGGTGTGGTCGTCAGGCGCCAGGCCTGCCGCCCGCACGAGGTTGGC
TCAGCTGGTGAGCGTCGAGAGCATGCCGCCGCCAGCAGCCAACACGACCTCCCAGCCAGG
CCCTTTCAGGGGGAAGTGCGGGACGGCATCAGCAGCCGCACGCGCACCGGTGAGGTCCCT
CCGGTCCATCACCTTCAGGAGGTCCTCGTCGCTGATGTCTGTCTGGATCATCCTGTCTTC
CTCGTCCTGCTCGTCCCTCAGAAGCGCCAGCAGCTCTCCCTCCTGCATTTTCAACAAAAG
AAAAACATATAAGTATTTGTTAGACCACAAGTAGAAGGCTGGGCAGAAATGTTTACTTAC
ATCTAAGGCATTAGGCTTCGCGGCATCTTGCTGGAACTGTCCCTTCCCAATCACGACGTG
CTCTAGCTTCAACTTTCCAAAAGCTTTCTTGATAATCCGTCCCTGCAACAATGAGAAGAT
GACCATCGGTACCACAAAATGTGGCCAAGCAGGGGTCCAGAGGTCATCGATCCAATGGCA
TCAATCCATAACATTGAGAAGTTGAGCATCACCCATACCTCAACAGAATTGGATGTCGCC
AACCGATAAACATGAACTGGCTGTGTTTGGCCAATACGGTGGCATCGATCCATAGCCTGC
AAATCCATCTGAGGATTCTGCACAACAAACCAAAAATGTTCAGCTTATAACAGCAATGAA
AGCTATCTGACAGCAAGCATTGTACCAAGGAGCAAAGCTACCAAAAAAAAACTGAAGGAG
AGATGAAATATTCAAACAAGGCATTCTAATGTACTACACTTCATAACACCATAAGAGTAA
TTCATCTGGACTACTAAAAACTACAAACTCTCCAGATAGATAGAAACTTACCCAGTCACT
ATCATACAGGATACAAGTATCAGCAGAAGTAAGGTTGATACCAAGCCCGCCAGCACGTGT
GCTGAGAATGAATACATTCATACCACTGTTTAAGTCATTAAACGCTGCTATCTGCCAAAG
GAAAAAAAGAAACCAAATATAGAGTGAGATAGCAAGACCCGTGGAGAGGCATCAATTATC
CAACAGAAAAGGGTAACATGTAACAGAAAAAAAAGCAATATAAAGGAACGTGCTATGGTT
CAGAACACAATTGGTTCCACAACAATAGCCATTTTGCCTTCATTAAAGTATACATATATC
AGGGCACCGCATAGGCAAAATGGAAGCAACTTGGGTGCTGAACTGCTGATCCTTTTAAAA
TTATGTAGCAAACAATATTTTGCTGAACCGGTGTGGAACAGGGTAAAGAATGGCTATCCA
TTCTTATAACTAGCTAACAAATTAGTCAGTTGTTTCCCTTGCAGTGAGATACTTAGCACA
GATTTTTTTTAACTAGTTCTAGCCAACAAATTTGCTAATTGCAGTTCTCTACATATATTC
AGGAAACAACCAGGCAAAATGGCAGTGCCTGGGAACCAACTCAGGTGGACGTGTTGAATT
AACATGATCCTGGTATTACATATTTGTGCCCAGAATCTAGACTGGCATTTGCGCGCATAG
CACAAGTCAACTGAATAGGGATATCGGCTCTATATGGACAAGGGCCGTATTGTTGGGAAA
GTAAGTTGAAATAGAGATATGGTTTGTCAGCTATGTTTCTTACCTATGCAAAGGGTATTG
TGCACTGTAATCATGACATGAATCAACTTAACATTACCATCAATTAGTAATCTCAGAGCA
CACTTAGTCTTGATTCTAAGCGCAGTTAGTAGTCAAGCTAGATGCTAAATTAATCATGAC
ATCTAATGTTTAGTTAGTAGTAGTAGTTATCTCAGAGCACACAAGCATACATATGATAAA
TAGGGCCTACCACATTACCTGGTTCCTCCTGTCTTCCAACTTAACACTACCATCAATCCG
GCAAACCTTCAGGCCTTTCTCAGACAAATAATAGTCAAGGATGTCCAAGATCTTTGTCCA
TTGCGAAAATATTAGGACCTACAAATATATCAATTGAACTATATTTCAGATATGAAAAAT
AGACGTCATGAAACATGTGCCACAGACATATCTATTGAAATGCATATGAAAACTATGGAA
CAAGAAGATAACCCCCAACCTTGTGATTTCGTTTGATTAAAGCATCCAGCAACCTGTCCA
ACAGCTGAAATTTGCCACACTGTTCCATAAGCTTATCAACAGGTGGATAGAGACCTGCAA
AGAGAGAAAATTAATGACAGTGTAGATAAAGGTATAAAACAATCAAATAGAGCATGCAAA
TAGGACATGTCCAATGAGACGACGTACTGTTTGAGTCAAAAGCAGAATGGAAAAGATCAG
GGTGGCCACAATTTTTTCTCAGCTGAATGAGTAGATTATTTAGCTTTGTTTTGATGCCGG
GCCTTCGCAAAACTACAATAAAGCAGAAACGTGTCAGATTAGAATATTATTTTCTTCTGC
ACAGATTGGACTATACAAGTATGCAGGAAGACATGCATGAGACATGCATACCAATATCTG
CACTCTCATGCAAGTAGTCGTCAAATGTCTCCTCAATCAAGTGACTCTGGATTTGCTTCT
GATGTTCAGTCATGTTAGCATATATGATTATCTCTTTCTTTCGTGGAAGCATGTGTTCTA
CATTCTCCTTCATCCGCCTTAAAAGGAAAGGGCGCAAAATAGCATGAAGCTTTGAGACAA
TAAGGACTCTCTTCTTCTCATCAGTTTCTTCCTCTAGTCCCTCATCAGCCTTCGCAGAAA
AATCAAACCTGTAAAACAATTACCATCAGCGGATGGCAATATTAATACAATTATACATAA
AGTACTCAAGAAGAAAATTCACTATCTGTATAACAAAAACATCACATGTTTAGGGACCAT
CTGAATAGTTATAAATAATTAATCCATATTAATTTATCCATCGCTATACATCCGAGCAAA
CGGAACATATTAACAGACAACATAAAAATAGAACAATATAAAATTCAACCAAAATTTAAA
TACACAAATTAACAGACATGGCATTTCTGTGTCAGGTACTCAACATAAATCAGGAAGATG
AAATGTCATAACATGTGTCTGCCATTGCAGATGCTCATCAAATAAAGCTCCTTAGGATCT
ACAAAACCGTATACAGAGCTGGATAACAAGAAATGGCTGCTCTGGAGCATGAGGGAATCA
GCCAGAGCCCTGGTGGTGCCCACTGTGGCCTATGGTAATCCCTCGTTTTTGGGAGTAATC
CGTGAGGGTTGTAATTGTCCTGGCCCACAATGCCACCATTGTGCCCAGCAATTTATATAT
TCTTCTTAATAAATGGGTGGTGCCCCTGCCAGATTACTACAGTTTAGCTTGTACTGGGAA
ATTGATATCTCGACTAATTAAATTTAACAGCTTCGTTTGCATTGAACCATTATATGTAAG
GATCAAACATTGATACTTCCAAGAATCCTGACAAATGCCATATATGTTCAGTTAGATACA
TATATTTATTGACTATCAGTACATCATTCAGGCAGTTAGAAAGCTAAACCTTTTGAAAGC
TAGACAAATGTTACATTGGGTAATCCAGTAACTTATATAATTACAACAATATAACTATAA
AAGGCAAACAAAAGACCATGGGACAGAAATTAGTTAACTGGAAATAAAAGTAATTCAAGG
ATACAAAGACTAATGAACAAAAATGGCAGTAAATGGTAGGCAATGGTTCATACCATGACT
CAAATTCCTCATGGGATGAGAATATATCTGGCAAAATGAAGTTCAATAGCGACCACAGCT
CTGCTAGATTATTCTGAAGAGGTGTTCCAGTCAAAAGGAGCTTGTTATCCATTGGAATGC
GCCTCAACTCCCTCAGTAATTTGCACTTCGTATTTTTCAACCGATGCCCCTGCAACAAAA
ATAATCCGGCCAACATATAAATACATGTGGAAGAGAGAGAAATATAAAAGGACAATAATT
CAGATCATGTGATATTCAATTACCTCATCTACAACAACATACTTCCACTTATAATTAGCA
AGAAACTTTGCATCAAACATGGCCATCTCATATGAAGTGATTATTATCGGAAAATCAGGA
CCAACAGTTTTGGGCATGTATTTTCTCCTTAGCTCTGTCCGAGCAGCTTTATCTCCATGA
TAAATCAGACCATTTAGAGATGGAGTGAACCTGAAATCAAGTATTCCACATAAGCTACCA
AACAAACTAAACACAGTGGATCACAACTATGGATGCTTTACCTCATTAACTCGTTCAACC
AGTTTGACAGGGTGGAAAGGGGAGCAATAACCATGTATGGACCATGCAGACCATTCCCTT
TAAGATGAGCAAGAAATGCAATTGTCTGGATTGTTTTCCCAAGGCCCATTTGATCAGCAA
GTATCCCATTCAGCCCATTTTGCCACAGTGATATTAGCCACTTAACACCCTTTATCTGGT
AAGATTTCAACTTTCCCCCAGTCAACAATGGAACAAGATTGGCTTGCTCTCTTTCCCACT
TTTCTTCTTCCGTGAGAGTACCATCATCAGCAGAACGATCTTCACGAGATCTTGTAAGCA
TGGCTGCCACTGCAGTTTTAGCCTTCTTCTGAACAACATTTCATCATCAGTAGTCAGACA
CAACATAAGGTCTAATCGATGAACATGAATTGTTTTTCCTATATATTTTTCTAACTAACG
ATAGAACAAATTATCCACTCAGAATGATGTGTCATCTCCAGGAAAATAATAAAATGAATG
GTATTCAACTGAAATCAACAAGTCCATGTCAAAGTAATTTAAACCGTGGAACAGTATTCC
AATGTGTAAACAACTCTAGCTATGCTGCAACAAATCTTGAACAACCCTTTTAAATAAGAG
ATTTGCGTGCTTTCAGTAAGAAGGATGCTACTGATGAAAAGGAAGCCAGGAAACGTTGAT
GAGTGGACATTATGATATCAAGCACCCCCATCTAGAATCATTCAAGCAGCAACACGCCTT
TTTCCTAATCTTAAACCCATTGAACAGGTAATCCGGACGGACTAACATATCATACTGCAG
GAAGCGATAGTGTATGACAGACAGGACATTTGCATAATCTAGACGACAACCAAAGCATAC
ATAGTAAAACTGTATTTATGAAGCAGAGGATCTAGAAGTCTGAACTCACGTCATTGTACT
GTGCCTTGGCCGCTTTCCTCTTTTTGCCACGTCCTTTCTTTTGCTCTTCCACGGGTTCCT
CCTCGTCTTTAATTTCAACAGCAGTCGGCTTAACCTACAGGCCACACCACCATTGTTAGC
AAACAAGGGAAAATAACTAGCAAGAGACCAAAAATGGTCATCAAAGAGTAAGGGGGCGCG
TACATCTGTGATCTGCTCCATCTTCTCAAGCAAGAATTCAGAATAGAGCTGTGTCTGTGT
CAGCAGCTCATCCAGCTTGTTGAACTTTGCCTTTGGGTCAAAGGCCTGCCTCGCGGCCTC
CTCTCTCTTTCTGGCCTCCTCTTCCTCCTCTAACTTAATCCGGGCCTGATACATCTCCTC
TTCCTCCTTGGTCATCACCTCTGTGATTAAAGAGGTATCGCCGTTCTTGGCCACGAGCTC
AAACGATGTCTCCTCTTTGACAGAGTTGAGCAGCAGTTCTTCAGCCTTCAGCGCCCCGTC
GATGGGATGCGCCTCGCCACCGTTGGCCTTGAGCTCGCCAGCTTTCCCATCCTTGGATCC
GGACATTTTCTATTTTTGCACAACATAATCAGATTCAGGCCAATGGATCGAGAACCGGAA
CAAGCAAGATACACAAATCGCATCGACGAAACGAAAGGGGATGTTTTTTTTCAATGGGGA
AAAAGGGGGAAATAGGAAACGGAATGCACCTAGACATCTCTATTAAATCGGAAGGTTTTA
ATAGCGGATCACCTCTTCCCCCAGAACGGAGATAGGAGAATCTGGGTCGGCGTCGGCGGC
AGCGGTGGTGTTGGCGGCGGCGGCGGCGGCGGCTGCTTCCCTCTTCGCCCCATTCGCCCT
GGCGACCACCATCTCGGCCGCGGCGGCAACAGGCGGCGACGTCGCCGAGTGTCGGTGGGG
CCGAGGCGTCATGCAGCAGTCCCTGCTGCGGCGGAGTTGGCGGCGAGCGGCGGTGGGGGA
GACCAGAGGGAGTGGCGGCGGCGACGGAGGAAGGAGCGCTTCCGGAGGATGCTGTGCGCG
TTTTTACTGAGGGGGAGTAGGGTGGGGCTCCTCCCTCGCCGAGATACAAGCACGGCGCGC
TGGGCCAGGACCTGCCACTGACGTTCGGGTCCACAACACTCCTGACCCCACACGTCGGTG
AGGAATACTCAAGCACGTCGCGGTGAATCGGGAAGGTGGCCAGGGGAATGGGGGCATGGG
CTCTGGAACCCTGCAGAGTGGGGTGGTACGGACGTTTGTTTTTACATAGACCCGGTTCGG
TGGACACTGGTCACTGAGCGGTGGGCCGAGCCATAGGTCTCGCGCTGGTCCACGGGGGAA
CCGGTCTGCGCAGGTGGGAGGGGTGGGTGGTGGCGCCGATAGCGAGGGTTTCAGGCGGGA
AACCGAGGGAGGGTTTAGGGAAACTCCATGCCCTCGTGGAGAGAGAGATTCACGGGACTG
CCACCCACCAGTGGCATCCCCCCTCTCGTTTGCCCGGCTCTGCCACGAGGGGCATCCTGG
TAAATTCGCGCGCTGCGGGCGGCCGTTCGAAGTTTGAAAATACGGGGAGGCGGCCGGGGC
TTCTCTCTCTCGCTCGCTTGACCGACGGGATCGTGGTCAGCACGCGGCTGACGTCTGGGC
CAGCCTGGGTGCCGGCCCCACCTGTCGGGCTGTAGATCTCGGTGGGTTCGGGAAAGTGGC
CCGGGAAACGGGAGGCGGGCCCCCGCTGCGGACTGCCTCGATCCCTGCGGTTTGCAGAGC
GAGGGGACGGCACGAACCGACCCGTCTTTGTTCGGATGGACACGGTCTGGTGGACCGCGT
GTCACTGCGTGATGGGGCCGGGTGTGAAGGTTGTGCTGGTCTGCGGTGGAACGGGTGTGT
GCGTGGATGGGGGGGGGCGCGGGTTGTGCGGGCCTTGTGCTGCTGCTGCGGTAGCACGGC
ATTGGCTGGGCGTTCGAATTGTTTGATGAAATTTTGTTTTCTTCGGTGGCTGCGCCGGGC
CGGAGTTATGTTTTTGACCGTTGGGAAAGGGCTCGGAAAAGCCAGGATCTATGGCAGGTC
GGCTCGTGGTCGCCACCGTGTGTATGGTCTTGCGGTAAAAAAAACAATCCGATGTACTGT
ACTCTGCTAATGATCCATGGGTTCCCGTGCCGATGTGCCATGCTGCTATCACGTGCGCGT
CTTTTGTTTGAAGCATCAAAACCCTGATCCGCTACCAAATTGACCTTCGAGTAAATTATA
CATGATCAAAATGTACCTCTTTTTACATCACCAGAACCCCACGCTCGTGAACCGTTTTTA
TCGTGAGAGGCGAACCAGAGTAAAGTCTCGAATAAACCGTCACGTTGTAGAAGGTGAGGA
ACCCTCGCCTTTAAATCCCTGAAGTTTGTATCCTGAACTTTCTGATCCTGATCTATTTTA
ACCTTAGTTGTGTTTGACACACCGAAAAAAGCACAGTCCTAAGCGGGAACTCGTTCTCAC
TATTGCACGGGTCATTAGAGCCATCTTCTTCCTCGTTCCCATATCCCTCCTGTAGCTCCC
TTTACTCTTTAGTTCCATCAATGGCAATAGGCAGGCCCGGGCCCACAGTGGTGCCACATG
TGCAGCCCGCACAGGGCCCACGATTTTGGGGGCCCCAAAAAATATATATATATATATGTA
TA