Map Locations of contig_49011 (9064 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_49011

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64575 1 597 bp MLOC_64575.1 Available Available None
MLOC_64574 1 534 bp MLOC_64574.1 Available Available None





CDS Structure of MLOC_64575






CDS Structure of MLOC_64574






Contig Sequence (9064 bp)

>contig_49011 9064 assembly3_WGSMorex_rbca.fasta
TTCATTCAATACAATTATATCATAGATAATAAACAATTATCTTGAAACAAGAAATATAAT
AATAACTGTTTATCATTGCCTCTAGGGCATATTTCCAACACTAGGCCTCTGCCACACCCA
GTCCTGCGGCCTCCCCTTGCCCAGCCCAACCGATGATTCCCTCGTAAAGTTGCAATCACG
GTTGTCGGTACCATGAGACAGCGTCGAGCTCACAACTGCAGGTATTTTAAGTTAATTGCA
GGTATTTTAAGTTAATTGTAAGAAGATATCAGTCTTTAGCACCATGTAATGAATCAGTAA
CACAGTTCATGCATGTCATAGTTCATCCTCTGTTTCCCACTTCATCATTTATCCTCTCTT
GTCTTTTTTAAACCTGTTTCTATAAGTTATTTCTCCCCTACCTCATCATTTATCCTATAT
GAAACTTTTCATCATTTATCCTCTCTTGTCTTTTTTAACTTTTTATAGTTTTCTTTTATT
TATCTCATCATTTATCCTATGTGTAACTCCTAACATAGCATCATTGTAGGTGTCTTACTT
TTTTTTAAACATGGTCCCTCAGGGTTACACATAGCATCATTGTAGGTGTCTTACTTTTTT
TCAAACATGGTCCCTCAGGGTCCGATTCGATAAAAAAGATCACCCGATTAATAAACGAAA
AACCGGATTAAAATCGTCACTATACGCCCGCAAAAACAAGGCACACAAGACAACCTACAC
AAAAAACGCACACACGCCGCCAAAAAGAAAAGCACCGTCGAGGTTGCAATCCGACATCAT
CATCATCACATTGACGACCACCTATGTAGCCTCCACCGCAGAGGCCTGCGTCGGTCAATG
TCAAACAATCCACCACACACACGTCATCGACGACCAGGCAGCTCCGACTCCGTCGACGAG
TATTGTAGGATAAAAAGCACCGGACCGATGCCCTCATATATAATATAATTGCGATTTAGC
AGGTATATATATATATAAAATGTGCTATGTCATGAAAAGCATAACTTTGTCAAGAAAAGC
ATATGGATTCATATGGAAATATACTTTCTAAATATATAAATTTTATTATAAATAATGTAT
ATTTAGCCAGCTAAATAGATGAACGAGAACTACACTCATGCCTCATGCAGGGGGGCGGAG
AGAGACAATCAGCTGGTTTAGGTTAGAGACCTTTCAGAGTACATCTAGTCAATATGTGTT
GTTTATTTTTGTAATTAGATGGCCCAGATTAATATACTACACCTAATATCCGGTAGTATA
TTGAGTGGTCAGGGGTTATTTTGAGTAGTTCCTTGTTTATCAGTCCGCGGGAATATTTCC
TCTTAATACAAGTGGATGGCACCGATTGACGGTGTTCTGGACTGGGGTCGGACCAAGAAC
CCCATGACGATTCATTAATGGGTCATCTTGGATAATACGTGATGCATACAAAAGAGATTT
TATAAGACTTGAAACATAAGATAAAGACTTTTCTCCATCGACGTAGCCAATTAAGACTCT
TGTTATGCTATGTTTCTGGTATATTATGTAAGTTGAGGCTAGGCTAGTTAATAGACGATG
GATACATAGAATCATTATCCGATCTATGTAAGGTTTAGTTCATCTAATCTCGTGATAGAT
CGGCTCTGCAATCGTCGTACACTCATTAATACAATCAAATAGGACGTAGGGTTTTACCTC
TTCGAGAGGACCTAAACCTGGGTAATTATTGTTCCTATGTTTTCCTGTATTTCATTGATT
CAAAGATCCACAACCCGAAACCCTACCTGATATCTGCTGATTGCTCGTCACCATGGGCAT
CTACGTCCATCGTAGTCGCCTTCGCAATGCTGCGGAGCGGCAGAGCGTGCAAGTGTATAG
GCCCCAGGCCGTCGTCGCTCTCACCGTATCCCCGTGGTGCGGCCTCTCATTTCCTCCGTT
CGGCACCGTCGCAGTTGCTCGTCACCATGGGCGGCTACCTCCATCATAGTCGCGCCTCTG
CACCGCTACGGAGCGGCAGAGCATAGTAGTGTACAGGCCCTAGGCTGCTGCCCTCATCCC
GTCCTGCGGCCTCCCCCTGCCTAGCCCGACCGATGATTCCCTCACAAAGTTGCAATCACA
GTTGTCGGTGCAATGAGACAACGACGAGCTCCCAACTGCAAGTTTTTTAAATTAAATGCA
CGAAAATACCACTCTTCAGTACCAAAGTTAAATGCATGAAAGTAATGAATCAGTAACATA
GTTCATGTATGTCACAGTTCATCGTTTATCCTCTCTTCCCCATTTCATCATCTTGTCTTT
TTCAAACTTTTTTTATAAGTTATTTCTCCCCTACCTCATCATTTATTCTATATGAATCTT
TTTTTATAAGTTATTTCTCCTATTTATTCTATATGAAACTTCTCATCATTTGCCCTCTCT
TGTCTTTTTTTAATCTATTTTTATAAGTTTTTTTCCTCTATCTCATCATTTATCCTACAT
GTAACTCTTAAAAAAGATCTTTGTTAGTGTCCTTAGATTTATTTTTTAAATATGGTCCCA
CAGGGTCGGCTTCATTAAAAAGGCCCGACTCATTAAACAAGATTCCTTAGATTTATTTTT
TAAATATGGTCCCACAGGGTCGGATTCATTAAAAAGGCCCGACTCATTAAACAAGATCGT
CCGATTAATAAACCAAAAACCTGACTAAAATCGTCACAAATACGTCCGTCAAAATAAGAC
ACACAGAACGATCTGACAACCTACACAAAAACGCACACATGCCGCCAAGAAGAGCGTCAT
CGAGGTTGCAATCGGACGTCGTCATCATCACATCGACGACTACCGATTAGCCGCCGGCAG
CTTCCATTCTGTCAAACGAGCATTGTAGAATACAAAGCGCTGGCCGGTGCCCTTATAATT
TTGATTTAGCAGGAATGTAAAAAAGCAGGGAAGAGAGAAGGCCAAGATGCCGCACTGGCC
TGGCCAGAGACGCCGCCTTCTTCCCGGCCATTCTCGAGAACCATGCACATCCGACTTGGT
GGACTCGAGATCTTACAAGCTGCATATATTATTCACTGGTAAATCCATGGACATTTTTCA
CTGAAAAGCAGCGCGTTGCATGCATTATGCTACGTACAGCGGCGACGCGCCGGCGGGTGC
GCGCGCGCGCCACGTTTTATTACATTCCCTGACAGGCAGCGAGTGGGTGGGTACATGGTA
ATTAAGATACTAGTACGGCTTGTCGGCGCCATGGACGGGCCGGGGATGGAGCTCGCGCGC
GGGGCGTCTGCCCTAGCATTCCCTCTGGCAGGTGCAGCGCCTGAGGTGGCAGTAGCCGGC
CGTCCAGTGCGCGCCGTGCTCGCTGACGCAATTCCTGGCGCAGCTCTTGTCCGAGAAGCA
CGGGAAATGGTGGTGCTGGCTCTTCCCCGTGCAAATCCGCGCCTCCGCCACGCCGACGCC
GCCGTCGCCGCCGTCGTCTGAAAAAACATGTCCCGGTGGCCGGCCACAAGCGTTAGACCA
TAACAATAAGCAGCAGCAAATCATAATAAGTTTGGGAGCGCCCGTTCGGGCTTAATTACG
TACAGGACGAAAGCAGGAGCAGCACCAGCAGCGCCGCGCACACGGTCGCCTTCGTCTTGA
ACTCCATTGGCTTCTGTGGGTGTAGGTAGTAGATAGGTGGATGGAGCAAAGCTAGAGCTT
CTGATCAAGGCGACCGTGTGTTCTCTGTTGTTGTTGTTGCCAGGAAGAGAAGCTCTCTAC
TTATATAGGGGGTTTGGGCCGGAGGAGGACGCTGCCGTGCTTGCATGCAGGTGCGTTCGT
GGCAGGCATCCTGCATGTAGCGTCGCCACCTGTCGGGCTGGAAGGCCGTGTTGTTCAGCT
GCTTGTTCCAACTCAGCGTGCGTCTGGATGCTTTGGGACGAGAGGAGTCGCCCCTTTGGA
CGCAAGAATTTGAACCGAAGTTCTCTTGTGAGTTGTGACGAAGGGGCGTTGGACTACGAG
ATGATCGATGGTCTCGAAACTGTCAAGTGCCTGGTCGCAAAAAGGGTCTATACGTACATG
GAGGTCTCGGAAGGCTGCGCCGCTCGAGCCGATCGATCCGCCCGTTTCAACTCTATCCAA
TCCAATCCAATCCTTTAAAAGTTAAGAGGATTCAACGAAGTAAAGTTAGTGTAGATTTTT
TTTACTCCTTCAATGATGTCTTTATATGCTCTTATTTAAAAAAGTATCTTTATATTAGTT
GAACAAAATTGAAACTGTGTAAACATTATTTTCTAGCCGCATGAATTTCAAACACTATGC
AATATACTTCCTCCGTTCTTAAATATNNNNNNTTTAAGATATTTCACTAGGAGTCTATAT
ACGAAACAAAATGAGTGAATCTACAAATCTATATACATCCGTATATAGTACACTAGTGAA
ACCTCTTTAAAGACTTATATTTAAGAACGGAGAGAGTATATCATAAAAATATTTGATTTA
AACACGTGGGAGAAGGAGGGGCGCGCGCGGGATGAGCGTATTTAGAAAGCAAAGATTGAA
GTGTGTTTTCGACGATGGAAGATAATTTTACTTGTGTAATATGTTTAGGGGATCGACTAG
ACGTGGTGTAAGGTAAGAAAACCGAATTTATCCTTCCTTACGGTCGAATAGGGGATCGGT
CAAAGTTGTTCTGAAGTGCAACATCGATGCCGCATTGCAAGCCAGACAAAAACTTGCTGA
CAATCTTCAGAAAAAGCAGTCTTACAGATCTGATAACAAGGTAAGCATGCAGTGAACGAA
ATTACATGTGTTCCCACATGAAAATGCATGCATGCCATCTGATCGAAGTATTGGCCCGAC
AGAGGCCGGCCGAGGCGATCTTCCATCGTCTAAACGAGTGCGTGCGTGCACTTGACCCTG
GGATCACTCTCGAAGTCTCGATCGATCCGTGGTCCTACCGGCGGGCAGAGCTTGCCTGGC
GCGCGCTGTCCTGCATGCAAGCCCAGGCCGGCCGTGGACGAGCCACGCGCCCAGGGCAGC
TCGCCGAGATCTACTACCTCGGCGGCCGCCCTACCTGCCCGCCGACTACCAAACGCTCTC
GTGCCCGGTGCCCTGGCAACCTGGCATGCATGCACCGCCGCAGCCAGAGGCGAACACTGT
CTCGTGCGTATATACCTGGGCGCCGCATGCACCGAGGCCGCCACGTGAACGACATCGATC
ACGCGGCACGCCACGCGGCCAGCCTCTCCGCCACGATGCATGCATGCATGCATGCTGCTT
CCAGTCCATGCACGACCGCCTCCGAGCTCATGTGTATATATAAAGCTGCTATCACCAATC
CGCATATAGCTACCCACAGCATACACACGATCGACTCCACCAGCCACTGCCAGAGACGTA
GTACGTAGCTAGCACAAAGTTCAGACCGCTCCCAGCCCGGCCGCTCAGCATGTGGACCAA
GAAGGTGGCGACGCAGGTGGTTTTGGTCCTGCTCCTCCTCCTCATCGCACGTACGTGTTA
ATTCATTTGTTCCCTCGCCATTTTCATCAGATTACACACACAGTTTGTATATATTACTAT
GCCATGTATGTACATGTCGACGTACGTTTGACAAACATGAACGGATCGGATGGATGGATG
CAGAGGAGGCGGCGGTGCCGGGGGCGGAGGCGAGGATCTGCCGGCGGCGCAGCGCGGGGT
TCAAGGGGCCGTGCGTGTCGAACAAGAACTGCGCGCAGGTCTGCATGCAAGAGGGATGGG
GCGGCGGCAACTGCGACGGGCCCCTGCGCCGGTGCAAGTGCATGAGGCGGTGCTGATCGT
AGCTGCAATGGCAGCTGCTCCTCACCGTACGTCAGCTAGCCAGCCCATGGAACCATACGC
TTGTGTACCTACTTGAATCGAATGTGTGCCTGTGTCCCCCTTCTACGTATCATCGTATGT
ACTCCACTAGCCAGCTACTGCATCTCGATCGATGCATCCATGGGCGGGCTACGATATAAT
AATGTATAAGAATAAAAACGTACGGTTCATGTTCCGTTCCTTTGTCACTGTTATAAGTTT
GCAAAGTGTCGATCAATAGTCCGGTCGTCTCGATGTTGGAGTTATGCTTGTGGCCACGTT
GATCGAGGTTTCCTAAGAGCAACTTTAATGGAGGGCGATTTCGTCGGCCTTTTGTTCGTT
TGGATCGACCGCTCCGTCCTATTTTAGACATTGATCGATAGCGCTCCGTTCTATTTTAAA
CATGGGTCTATCCGTTCTATTTTAAACATGAAACATGGGTCGGTAGCGCGTTCAACGCGC
CGATTCATATGTGCCGACGTGACCGGCTAGTCGTTCTAATTTGCATAGAATGAATCAAAT
AACATAATTTGAATCGAATAAAATAGCATAGTTATTACAAGCCAAATAAAAGTAACACTT
TTCACATAGTTTTGCAAACGAATAAAAGAAACAACATGAGTTCACATATGCTCAACCTTA
TCATTTTGCAGGGTTTTTCAATCACGCATGTCTTAAAATTAGGTGAACTGTTTAAACGTT
GTCGTTCCTTCATGCGCAAGTACAACATTCTCACCCTAAAACTGACACCCTATCATACAG
ACGTTCCGAACGCTCGTCTTCTACGATTATATTATGCATGATCATACAAGCAGTCATCAT
CTCTCACCGTTTCTGCGTGCTTCAAGCGCTTGTCTTCTACGATTATATTATGCATGATTA
CGATTATATTATGCATGATCATACAAGCAGTCATCATCTCTTACAGTTTCTGCGTGCTCC
AGGTACAGGATACCTAATGATGCCCCATTGAAATTGTAAAACACCAAAAGGCACGTTCGA
CATCCTTCCTAGCACTCTCTTGTTTTTGAATAAATCTTTTCCTCTTCTCTCCGACAGGGT
TGGGTATTGTCTTGACAATAGTGATGCACTGAGGATAGATACCGTCATCCAGGTAGTATC
CTTTGTCGTAGTTGTGGTCGCTGACAGTAAAGTTCACCGGTGGGTTGTTGCCTTCGGCAA
GCCTATCAAACACCGACGAGCGCTGAAGCACGTTGATATCATTGTGTGATCCGGCCATGT
CAAAGAAAGAATGCCAGATCCAGATATCTACAGATGCCATGGTCTCTAGTATGACAGCGC
AAGCCCTGACATGGTCCTTATACTGTCCTCGTCAAGCAGAAGGGCGGTTCTTTCATTTCC
AGTGCATGCAGTCTATGCTATCAAGCATCTTTGGGAAGCCCTGCTGGTATTCATCGCCAA
CAAACGGGCTGTATCTTCAGCAGTCGTCTCTCTCAAGTACTCAGGGCCAAACACAACAAT
AACATCCTTGCAGAACTTATACAGGGACTTTAGACAAGTAGACTCGTTTATACGGACGTA
CTCGTCAATGAGATCACCGGACACTCCGTATGCAAGCAATCGGATGGCGACAGTGCATTT
CTGAGAAGAGAAAAAAACTATCTTGCCAACGGCATCCTCTTTGCACTCGAAATAGTCATC
ATAACCGAGCATTCCATCTCTAATACGATTGAAAAGATGCCTACTCATACGGAAACGACG
ACGGAATTTCTGATGTTTAAACAACAGGTTTGTTGTATCAAAGTAGTCCTTTCAAAGAAG
GAAATGCCCGCTCTCTCGGTTGCGATTCAACGCCGGAAGGTGGCCCGGAATGGAGCCACG
GAACAACGATTGCTGGTTGTTGAGGTGGTGATGGACCAACAAGACAACCAATATCTCCTC
CTCGTCATCGAACGACGAATCGTCGGAGTCGCAAAGGAAATTATGAAAAAAGAACTCGTC
GGCGGAGTCCATTTTGTACCTTGGAAAACTGTCGAACAGCTTGCGGGCGTCGACGAAGGA
GACGGCCGGCAAAGGGAGTCGCGACACGCACGGACCAGCTAGCTGCCCTGTCGCCGTCTG
ACGAGTGGGCCGGCGTCCGACGAGCGTGTCGGTGAGGACCTGGCCGGGCGGCGAGGCGGC
TTCTTGGTCGGGGCAGGCTGTGTGGTGCGGGCATGGGGTGGGAAGCAGTCGGCTCCCCGA
CGGCAAGACGGCGACGTCGGGCGACGTGGGAGTGGGCGGTGTTGCTCGGCGGATGTGGAG
GCGCCGACAGCTGGCAGAGTCGTCGGCAAAAATGGGCGGCGACGTCGGCGACGAAGGAGG
CACGCGAGGTTGGATGGCGGGAGGCCAATGTGCCACCGACCAGCGGGCCCGGGGGAGGAG
AAGGCGAGCGTGTGCGCGTCCATCGCGTGTTCGCGCCGACGTAAATTTGGCTCAAAAATA
GGCCGGGAATGGATTGTCTGCGGACGAAAACCGAACGCGCGTCCGTTTGGATCGACGAGT
TGGGCCGCCTTTTGTGTCCACGCCGATCCAAACGGACGGCGGCGGACGAAATGGATCGTC
CTATTGAAGTTGCTCTACCAGGCTATCATGTTGGATAGAGAAAAATATGTTTTTATCCTA
AGTATAGACTGGTATACATTTGGTCCTCAAGTCTCAAAACTGGATAAGTTTGGTCTAAAA
CGAGATTAAGCAGGTCGACCGGGTTTAACTGATGAACAGTAAATAAAAAAAACAACAAGT
TTAGTTGATGAACAGTAGATTCTAAAAACAACAAAGTTTAAGTGATGAACAGTAAATAAA
AAAATAGCAAAAGAATTCAGAAAAATCTGAATTTCGGTGGCCATCAAGATGCTTGGGTGC
GTGCGTGAAAATTGGCCTTGGTCTCGTGTTTCAACAACATTTGAGGAGCTCGTGGCGAAA
AATATAATATTGGCTGTCAAAATTTGCTTTTTTGGTTGTCAAAATTTGCTTTTTGTCACA
AAATTTAAGATTTCTTAAAATTTATTTCCTATTGTTTTAATTAACTGTTCACGGTCAAAC
CTCATCAACATGGTCAAACTCGGTCAAAGGCCGGTCAAGTGTATAAAATCTGGTTTTGAG
ACTTGAAGGATCAAATCTTTACCTAATAACAAAGGGGGCTGCTACGCATTCACCGGCGGA
TGTTTTAGTAAACATCTTCCACCTGGAGGGCCGTCCGATCTACGCGCACCCGTCCGATCT
GCTCCGGGCTGGCACCACATAATTCCGGAAACGACGGTTGAGTTGTAGAAACTTTCGCTT
TGTT