morexGenes - Barley RNA-seq Database

Contig contig_48990
Source Contig contig_48990
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48990 (7620 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_48990

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64555	3	3913 bp	MLOC_64555.1	Available	Available	LOC_Os05g08370.1, FRAME:-3, EVALUE:0.0, 13105.m00920 protein CESA1 - cellulose synthase, expressed
CDS Structure of MLOC_64555

Contig Sequence (7620 bp)

>contig_48990 7620 assembly3_WGSMorex_rbca.fasta
GGAGCAGCCATGCAGCTCCGTCCCTGCGTGAGGGAGAGAGGAGTCGGGAGCTCCTAACCC
ATCTCCGCACTGGTCGGCGAGGCCGTAGGACGTGAGGGAGAGAGGATTCGGAGCTCCCAA
GAGACTCTCGGGAAGGATAAGCGGGATCGAGAAAGGAGGACGGGGAATGGGTTGGTAATC
CACATATGACCCTAGGCTCAGATGCTTGTGATGAATGGCAAATTCAAAGAACAAAATGGC
AGAAATGAAAAATAAATATGAAATTATTTGACATCAGGATGCTGCCCAAAAAAATTCTAA
ACAATGCAGTTTTAAAAGTTTCTTTGAGAGTCAAATTTTGTTTTTTTCGAGCACCTCAAA
TGTCCTAACACCGTGAAAAGGTGCACACCCCTTGCACACTCAAGCATCTTGGATGCAAAA
ATAAAATTCTGATTTCTTTTATTCTTTTTGATGATTTTGACAACTTTTCTATACACGCAC
GAATGGGCCTCTATTTCATAGGATGTACATCTCAGTGCCGAATAGCAGTGTTTCAAACAT
CAAAACAAGCTAATAGCAGCAGTTCAATATACCATTGTGGGTGGAAGGGATGTACTGAAG
CAAGGTTTGATCAAACGTATTGGCAATGGGGAAACTACATACATATGGGAAGATAATTGG
CTTCCGCATGATGAGATGTTGAGACCGTATGGATGCTTGATCTCTGATCCACTAGCCTTG
CTGGCTGAACTCATCGATGCACCAGCGACTGGGGAACAAACAACGTCTGGAAGTAGTTTT
TCTGCCGATGGATGTTCCTATCATCTTAGGAATACCACTGTGCACGAGAAATATGGAAGA
CTTTTGGAACTAGAATTTCGAAAGGAGTGGAGTCTTCTCTGTAAAATCAGCATATAAGAT
GCTTGTGGCAACCAAACAAAGGCATGAGGCATGGCTTGAAGGGGCTGGAGGATCATCAAG
TACGGGTACAGGGGAAAAGGTGTAGAAGCTGCTCTGAAATATTCAAGTCCCGGCAAAAAT
TTGAATGTTCATGTGGCGATTGGCCAAACAGTCCATTCACCAACACAAGATGTCAGAGCC
CATAGACATATGACTACATCCAGCCCCGAGGGATGAAAGACGGCGGAGGTGTTTCCTCAG
TCCTCACCATTCAGAGGAGGCACTTCGGCAGCGGTCTACAGAGGCGAGCACGCTAACTAT
TTGGGTAGCTCGGCGTCTGTCAATGTTGAAGGCTATTGCGTGTAGGGAGACGCTTGCTTT
GGCAGACGACCTACTCTTGCAAAATTTTATCATCACATCAGTATCTATATAAGCAGGTAG
TGGTAGAAGACATACTAAAGGGCAACCAAGAAAAATATTGCACTGTCATTACTGAAATCA
AGCATCGAGCTACTAATTTGTTGAAATTAGTGATGAGCCTTAGGTCCATAAAAGAATTTT
CGAAAAATCTTCAAGGACCCATGTAGGTGATAGTGGGAAGTTTAATCCCACCCCGCAGGT
GGAGGAGAAATTGGACCCCACTAATTTGTTGAAATTAGTGATGAGCCTTAGGCCCATAAA
AGAATTTCCGAAAAATCTTCAAGGGCCCATGTAGGTGATAGTGGGAAGTTTAATCCCACC
CCGTTGGTGGAGGAGAAATTAGACCCCTTTATAAGGGTCTCTCTTCCATATACTATTGGA
GAGTGAGAAGATAAGATGCCTCGCGCACTCCTCCTCCGCCGTCCGCCATCGTGGGCTGTT
ACGGACTCGGACGTGGGTCTCCGCCCAACCGCCTTTATAAGTTTATCCTAGCAGTACTAC
TTGCTTGCATAGATGTATCAACTATATGCGTAGTATGTGCTAAGTTAGTTCATGATCAGC
ATATCATTAGTCTAGTTAATGCCATGCTAGTTATTATCTCGTGGATTAACACACTCAAAA
ATTACCTATTTATTCATCATAATTTTAATTGTAAATTTATTTTTGAAAGTAGGCAGTCGA
ATAAAACAGCTCATAATTTAGCTAAGTTTTCGTATTCATTAGGTCAAGGGCGCCATGTGT
GGCTAGGATATCCCCATGACCCGAGATGTATTTCACAATCTACGGTCTTTGATGAATAAA
ACTTGGCTTTTCCCCTAAAAAAAGCAGTTCAATATACCAAGCATTATTAACTGAAATATC
GCCACACATTCATGCCAAAAAAATTAACCAACACAGAAAACAATCACAATCAAGCTAACA
TCATGCAATCAGGCAAATACATTGTAATTCATATACCATGGCACCTCTCACACCAGGATT
GCAGAAGAGTTGATGCAACAGCTGCCTTATATAAATAGTTGGTGTCATAGTGTGTATAGA
ACTATAGATACGTTCTGACATAATATACTCTAAGAAGAAACAACAGGTATCACAGATGAA
AAGAAAAGGAGAAAAAAATCACAATGTACGCTGCAGGTTTCGTAGGCTTCACGGTTTGTG
CTTCTCAGCACGAAGGGGCAATAATAACTTACATAAAACTCCGTCTTCATCTACAACAAC
AAAATCCCATCCAACCCCCTCCGGTATTTACACGAGGGGGGCAGATACTCTTCGGCGCCG
ATCAGCAGTTGACGCCACACTGCCCCATGGCGACGGCTTTCTGGGTATCGGATATGAAAG
GGTCGATCTTCACCCACAGGAGGGAGAAGATGGAGGCTAGGAGGATGGACCAAACAATGA
CGATGGTTGGCGTGCGGTTCTGCTTCCCCATGAGACCCTTGAGGAAGGGGTAGAGATGGA
GGATCACCCAGATTGAGAAGAAGAGCTTTCCGAAGAGTGGACCCCAAGACTGGTAACCGC
TGTTGATGGCATATGATATGCCTGCCACCATGCCCACCAGGTTAATCACAAGGACGGTGG
TCGGAGGAATGAGGAGACTGGTCCACTTGAACACGTATAACTCAGCAAAATCGCCATCCT
CGTCGTTTGCCTTCGAGGTAACCGTGAAGTTGGTGTCAATCCCGGCCAACACCTTCAGCA
GACCCTGGAACACTGCGAAAAGATGGGCAGATGTGCCACCAATAACCCAGAACTGCTCGT
TTCTCCACCAGTCCTCGATGCCGACACCACTCCATCGCAGCTCCAATATACCCGTGGCAA
AGATGGAGGCAAACATAAGAATAAAGAACATCCCAGCATAGTTACTGATCTGCATATCAG
AAGAACAAAGAAAACATATGAACATCAGAAAATTTTCTGACACAAAGACACACTAGAAGG
ACATAGCTCTGCTGAAATATAAACTATGATCAGCCAAAACATTTTCCGCTCGTGGTCAAT
AACAACATATCAAGTGACATAATGCAGATAACAATCGCGCGAAAGGGTTTCTTGTAACTA
ACCTCGGGAATGATAAATTTGTTGGTGAGGAGACAGATAGCAGGAAGCACACAATAGGCG
ATAAGTGGAAGGGATGTTATTGGATAAACAATGGTGTTGATGTAAGCCATCCTCTCCAGA
AGTTTCAACCGCCCACCGTAATTGTACCAGATAGGACAATGTCTGCTAAACAGAATTTCA
ACTGACCCAAGAGCCCACCGGAGAACTTGATTGAGACGGTCAGAGAGATTGATTGGCGCA
GAACCCTTGAAACAAGGTCGTGGTGGCATGCAGTAGATTGATATCCAACCTCTTGCGTGC
ATTTTAAACCCAGTAAGAATATCTTCAGTAACTGAACCATAGATCCAGCCAATCTAAAAC
AACACAAGAAAATCTCAGTTTCAATTTGGCATCTCCACATAGAGAACAGAATGAGGGAGA
CTATGACTCTCACACTAACCTCTTTTCCCCATTCGGTTTTGTCCTCATATCCACAGCTGA
TGACATGGATGGCTTCCTTTAGTAGGGAAGCTGGGTTCGTTGAAGGTGGTATGCCTCCTT
GAGTCATAAAGGTGGATGCAGTAAATATAGGAGACTGACCAAATCGTTTCTCCAATCTCT
TCTGGGACATAAGCATGGACCTTTCATCCTCATAACCTGATGAGATTCAGAAAGAGTGAT
TAGTTCAAGCAAGTCATAGCTCAGAATCTCAAGAACCAAAGCGAAGACTAAATAGAAGCA
TAATTTTGTAGTGATGCAGTATATACAGCGATTGTTTTCAGATGCCAAGAATAGATGTAA
GGTAAAAATTGCAAGCACATACCTTCTATTCCCTCTTCTATATCATCCATGTTGAAGATG
GGAGCAGAAGACTCAGTTCTCTTCATCATACGGTTTTTGTTATCCATATAGCTCTTGTTC
TTTTTCTTTCTGCCACCACAGCAGCTCTTAACAACAATGTTAGGTTCCAAATCAGCCTCA
GTTAATACAGGATCATAGCCATACAAGGCCTGCCTATTGAAACAGCATCCTGTTCCGACA
TACATTGGACCCTGAATGCCATCTAAACCTTTCATGTTGATCTGCAAATAGGAAAACCAT
GTAAGAGACAAGAAAGTGTTGTCATCCTGATGAACACAGACACCACCAGACTTACATCAA
AGAAAACTATGTTGCGATTAGCATATCGATCGTGCAAATCAATGCCATCAAATCTTTGTG
GAAATTGGACATAGCAAGTCTTCCTTCCTAGAGCGGGATCCATCATGAAGCACATTGCTT
CTCTAAGAGCTTTGCTGCTATTGAAGTAGTGATCACAATCCACATTAAGAAGATAGGCAC
CATTTGTCAACACAGCAGATACGCGAATCTGCCAACCAGCAAAAGATATGCAGTCGTATA
GTTAGCAACGAACCAGATAAAATCCAATGCAATGTACACAAGAAAATTCGTGGAAGAGGA
CACATACCAGTGCATTCATTGCACCAGCCTTCTTGTGATGCTGGAAACCTGGTCTCTTTT
CACGAGAGACATACACAAGCCGTGGCAACTCATTACCATCAGTGTCAAGGCCACCACTGT
GCCCCAAGAACACCTGAATTCCACGAAAAGTAAGTTTAATACATAAGATTCAAATTAAGT
TGACATTATTTTCAAGTGACAGGCGCATTGAAGTAGAAGGTACCTGAATCATGCCAGGAT
GGTCCCTAGGGTTATTCCCAGGCCAAGCGGTGCCATCGGCCATGGTCCACCCCTCTTCGG
GCACTTTTTGGGCTTTGGCAACAAGTGCGTTGATTCGTATTTTAAATTCTTCATACTCTC
TCTGAAACAAAGCATACCCCAAAGTTAATATCCAAGCAGAATTTGGGGAAAGAGAAATCT
AAGCATGTGGCTTGTAGCTTACCTTCATTGCTCGCCTTTCCTTCACAAAAGAAGGCTGAA
TTTTGTCCTTCAGGTAATCTATTTTTTGCTGAAAGTAAAACTCTGGGGCCCTTGGTTCAA
TGTTGTGCTTCTTGCAGAATGGAACCCACTTCCTAGCAAATTCTGCAGTTTCTGAGAGCG
ACTCAAACGTCAACATAGCCGAACCATCATCAGAAACATAGCATGACACTTTGTCGACAG
GGTAATCCACAGCAAGAATGGACAGAACAGTATTTGCTGTGATCAGGGGAGGTTCCTTCA
GTGGATCCACTGTACTGACAAAGATATCAATGGGACACAGCTGTGATGGCTCTCCCTCCC
TATCATACCTGCAACAATAGATTATGCACCTCAGGACACATAATTTTAATGAAATATGTT
ATGGTGCCAAAAATCACGAACAAATGTAGGACCCATTTGTCGTAACTTACCTCAATGCAA
GCCTGTCAAGGTATGTTTCACGGTTGATTGGGTACCATTTTGGAAACTGATCTAGAAGCC
AAGACAAGGCAAACCAAATCTCACAGATAACAGAGACTAGCCATAATCCATAAGCATCAC
GCACTGGATGACTGACACGATACTGGAAGAAGAAGCACAGGATGATAAGTCGGAGGATGA
TCACTATCCGGTAAAGGTTGAGCTGGTTTGCAGGAATAGGCACTATACGGCTCAGAGGCA
GACGTGCATCATCAACCCTGCCAAAGACAAAAGTACAGATATCTCAGTTTCATTGAGTAA
TTTCCAATTGAACATCAAACTGCAACAACACTACAGGTAAAGCATGGTCAAGACAAAAAA
TCATAGATCCTAATCAACTCAGAAACATAAAGCTATCAGAACAGACATTGATTGTAATGG
AGAAAGGTTATTTATACATTTGCATATCTTCGCCATTTGAGCCAGTTCCTTCCATGTCTC
CCCCTCCTCTTGGATCTGGATATTTATTGGTCACCTGCATCATGTTTTTGTCCTGCTTAA
CCCTCCAGCTTTCAACTCTTTCCTTCCAGTCAACACTGTTAAGCCCATAAGAGTTCAAGT
CCTTCGAAGGGTCCACAATCCTCACAGGAACTGATATCATAGTAGAGAAGTGTTAATATT
TGCACAAGATGAGCAGACAAATTCTCCAAAAGAAGCTATTTATGACAGATAAGAATATAC
CTGGGACACTAGGATCGACATAGCTTGATGTTGGGCTGCGGATAGAGTGGCGATCAGGGG
AAGCATCAGGGATTTCCCCGGAGATCTGAAAAAGATTTTCAATGCATCAATGCACAAGAG
CAAGGAATTCTTGCAAAAACAAGCTAAGCTTTCATGAATGCATGAAAAAACTAAGTGCCT
GAATGATAGGTATTTACCTGTTGCCCAGTTGTGAGACGAGGAATACGATGATGGGGCTCA
TGGCGAGAGGATGAAGACAAATCAATGTCTTCTCCTTGCCACTCTGGACCTTTGCCATTC
CCTTGCTTATAGTTGAACTCATTGTCCAGGTCATCAACATCTTCTTCCTCCTCGTCTCCT
GGAACTCGGGGGCTACCTGAATTTTGTCAACAAGTGATGTATACATCAATTAGCATGATT
TATAAACAAAAAGCATAAGAATATGAGGTGGATGGGTTTAATTTTATATGTGGAGCAACA
GGCAACGACCAGTATGCCACGGCTTTGGCTCATAGAAAGCAGGCTTCCACATGCAATTCT
CATACAGATCACATAACAAAATCAACATGTTGTACAGAAACAAACCTTTGAGCCTCTTGT
ATCTGGTCTTGCACTGAGGACAGCATTGGACCCCATCCTTGCGCTCGTACTCGTAGCAAG
GGCGGCAGACTGGGAAGGCGCACTCGTTGCAGGCAACAAAGACATCACCAGTGGCCGAAA
CGCCAACGGTATCACCACATATCTGGCAGGCCTGACCACCCGCGCCTTTCACCTCCTTAC
CCTGCATCAGCAAGGTCAAAACAAGGTCAGCACACGCCCGTTCCCAGGAGACACAGCAAC
CCCCCATGCAACATGACATAATCGGTCATCAACCGATCATCTGCTTGTCTTAAAGTTGAA
ACTATGATCCAGGTGTCGGGAACGGCATGAATTGTGAATTGCGCGATGTTAAGGTAAGGT
GGGCTCATCAGTGAGTGAATACTGAACATGGTACCTCCCAATGTATCTGTGAGGTCTGGA
ACAGATAACCACCCATGTCATGAACGGCATGGCACTGAAAGGAACATCTCCCGACTGCTC
CGCCGCTCGTCGATTATCCCTCGCGTGAACGGGGCCGCCCCGCCGTTAACGGACAGGGGG
AATGCGGCAAATCTATCTACGAATCCAACGCGCGACCACGAGCACCCCCCCCCCCCCCCC