morexGenes - Barley RNA-seq Database

Contig contig_48973
Source Contig contig_48973
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48973 (8801 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_48973

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64541	2	2296 bp	MLOC_64541.1	Available	Available	LOC_Os03g51080.1, FRAME:+3, EVALUE:0.0, 13103.m05554 protein glutamate decarboxylase, putative, expressed
CDS Structure of MLOC_64541

Contig Sequence (8801 bp)

>contig_48973 8801 assembly3_WGSMorex_rbca.fasta
GGCCGGGCCTTTAGTCTCGGCCCAGAGGCAGGCCGGGACTCAATGGTCCAGGCCAAAGGC
CCGTTTTCTACTAGTGAATAAAGTTCGCCGGTAGTAGCAAAACCAATTACGGTTGCAGCA
AAAATCATCGTCATCGCAAGATTACAGCTTCTGCTTGATGGATGTAGCAAAATACTTGAC
CCGTAATAGCAAAAACACAAATACGGTTGCAGTAAATATCATGGTCATGGGCCCGACGAA
TAACCACATAGGCCGACGAACAGCCATGTCCGGTCGAACGGTTTGGCCACCGCGTCGTTA
ATAAATGTTCCCTTTCTTCAAACATTGTGTGTACATATAAACTAATCAAGATGACGTAAA
GGTTGTCCAGGACGGAACACCACCGAGCACATCATCAAAAATCCCACACACGCTAAGCCG
CCGTCAAGAGGTTTACCAGTGCAAGACTGAGCAAGACCATTGATCGATTTCGCTTAGGAG
AGAACACACTCCACATTTTACGTGTTCGCTGTGCTTTGTGCATAAACTTTCGTCCTACTT
CCTGCCTTTCACGGCAGGAAAAAAGGGAACAAATCCCGTACGTCGATGGCAGGCACGGTA
GGTAGGTACATCCTCACACACGCGGCACTGGTGAGTGGCAACTGGCCTGGCAAGCTTCGT
CTTAGTTCACCAAAACTCGTGGCCACCGACACCACGGGCCATGAATTATTGATCGACGCA
TGTGCGTATGGCCGCATGGCCGATCTCGCAACCACTCCAATCGCAGAGTCGTGATACACG
ACTCGCATTATCCTACGGTTATGGTCTGGCTAGGCGCAGAAAAGGACGGATCGTTGGGCT
ACAAACAAGACTGACAGCTCACGATGAAGTTCCAAAACAGCTTAAATTAGGGAGTAGTGA
TAATAAAATCTTAAAGAGGAGGATCTCACGAATCGGCAATGGCGCCTAGCCGTCCGTCCG
TCGATCCGTGGTGTCCGCCACTAGCCCACTAGTACATTCTTCCTCCGAAGTCCGGATTCA
TGGAATGTCATGGCAACTTTATCGGGACATTTAAAATAGACGTACATTTTATTCGGATTT
TGTTCATATAATCGTTTCAGTATTGTTTTACGTTGGACGTGCGTCCAACGGACAAACGCA
TATTGTCCTGCTCCATATGCCACGCCAGAAGTCATAGTTTCATATGTCACCGAGAGAGCG
AGCGGCTGGCATCGGGTATAACATGACCACCCCCACCCACCCCCTCCACATAGTTTCATG
CCGGCAAACAAATGTCAGCGGCTGACACACATGTCAGCCATAAAAAAATTGTCAGTATTC
ATATCTAGTGGCCCATAGTTCATACTGATGTACACAACCGACATACAAAATAACGTCGTT
CGTGGCCGTGGCTCGGTCATCTAGATCGAGCATCTCATTTTACTTGTTCTCAAACCAAAA
CCGTCTCCTCGGAGACATGTTGGTCAAGTCCAAGGTCATGAAAGTAAATAGGGAAAATCT
AAAGTGCACACAATGCACACTCGCTTTCCCGTGCGGCTGATGCGCACAACTCGGAGAGCT
CGTTTAGCAGCATTGCATTTTAAAAAAGATTTATCTATCCATTTTCACCACTGACTTTAT
CGCGACGAGATCTTCAAAAGTAGATCCCATGCCGACATGTTTCGATAACTTTTGTTTTCG
TCGGTACTTGCCAGATTACTATAACTTACTTGTCACATTATTCGTCACATAGTTCTCACA
TTAAATTAACTTAATTATCAGGTTTATGAATGTTCACTAAAAAACTTGATTCATTGTACG
TGTGCTTGTCACGGCCATGGAGGCGGCCGAAAGAATAGCCGGTAGGTCGGCACAACCCTA
GCATGAGGAGGGCGTTCGTCGTAGCTTGTTGCATGGCCTTGGCGACGAGGGCCTTGTTGT
CCTCAATGGCGGCCTTGTGTTGCACGGTCGCCACCTTGAGGGTGTACTCGGACATGGCCT
TCTTCCGGGTCTGAACGGACTGTTGGGCTCTTCTCTTGGCCAACTCTCGGCCGAGTCTCT
CAAGATCCGCCGGCGTGAGTGGCGGCCTAGGCTTCGAAGCCTCATTCTTCTTTTTGGCGG
CGACCCGGCCGACGGTGGCGTCAGGCTTCGGGGCGCTGACCATGGAGGCGGGGTCGGAAG
AGGGTGGGAGGGTTTTTGAAAAGATAGGGAAATGGAAGGCGTTGTCTCGTCGACGGACGA
CCCAAATGAGAACAAGAGCGTACGTCTCATCCGCGCGCTGTCCGTTTGGACGCAAACACG
ATTCAAATTTGGTTCCAAGACGAACAAAAATTGAACGTCTATCCGTTTGCGCGCGTTAGG
TCATGTTTTGTGTCCGTTTCATCCCAAACAAACGCGGCTGAATCATTTGAGGTCGTCAGT
TGGAGTTGCCCTCACCCTTGAGCTGCCAATTTACGAAAGCAAAGCGCGAAAAAAAGAAGA
GTCAAAAGAGCAATATAACAGAGGGAAAGCGACCCGACGAATGGAAAGAGGGAAGCTTCT
CCTCCACCTTGGGAGGGCCAACACCAGACACCGGAGCGCGCAGCCCCGAACAGGCATCAT
CGACCCCCAAGTGTCGAATAAAGCGTGACCGAACGAAACGGGAACAGAAACATCTTCGTC
CAACCATGAACCAACGGTAAAACTAAAAGACGTAGACGAATGGCGAACGGGATCACGCTG
CGTGACTGCGTCACATGTAGTACTACATGCTTTTTTTTTTGAACGGTGACATGTAAATGT
AGGCTGTACGTAGCTTCCCCCTCCCCTTCGTCAAAATCTTCCCCTTCCCCCACCCCCTCG
ATTTCGATTATAAATATTCCGCCATTTTTGTCTCCCGGCCAGCACGGCGCATACAATAGG
AAACGCTCCCGCTTTCCTTGGTAACGCGCTTGACCCTGACCCTCGTGTTTGTTGATCAAG
CACGAACCCAGCAGCATCAGCGCTAGCCAGTACCGCCGGCCCCCATCTCCGATCGGATCG
GCCGTCCTCGCCGCCGGCGAGCGATCAAGATGGTGCTCTCCCACGCCGCGTCGGGAGGGT
CGTCCGACGACTCGGTGCACTCCACCTTCGCCTCCCGCTACGTCCGCGCCTCCCTGCCAA
GGTGCGTCCTTCCTAGCGCTCTGCTTGTGCGCGCGCGCGCATGGCGGATGGATCATGGAT
CATGGAGATGGATGCTAATTGATTTGGATGGGATGGGATGGGCATGTACGTAGGTACCGG
ATGCCGGAGAACTCGATCCCCAAGGAAGCGGCGTACCAGATCATCAACGACGAGCTGATG
CTGGACGGGAACCCGCGGCTGAACCTGGCGTCCTTCGTCACCACCTGGATGGAGCCCGAG
TGCAACAAGCTCATGATGGACTCCATCAACAAGAACTACGTCGACATGGACGAGTACCCC
GTCACCACCGAGCTCCAGGTATCTATTAATTCCCATCCCATTCCATTACTCATTTACTGC
TTACTTTGGCGTTACTTCGGTCATCTCTTTACTTTAATCCCCGGTATCGCCAACCTGCTG
CGTGCTCGAGTCCCCCTGATTTGCTATCGAGATCTCCTTCTTCTTATGACTGCTCCACTT
GGCCTGATCCAGTGATCCTGCATGGAAGTTTGAAAACTAGGAATGGTAGAAAATGATCGA
GCACCCACGTCATATGCGCGTTCGTATCTTGCCTCTACCCTAGCGACGATTATTATATGT
AGAGTTCAGTTACCTTTCTGCCCACAGTTTCAGATTTTTATTCCTATGTATGTACGCGTG
TAAAAGAGACGAATTATGTAGCAGGAACGGACTCCGGAACTCTTTTCCATTGCTCTCAAG
TTTATCTAGGCGTCCTAGATGTCACCGAGAGAAACAAAAAGGTCGGTCGATTCGCCACTT
GGGCATTCAGTAGTCGTGTCAGGCTAGCAGCAAGTGACAAAACCAGGAGGTATAGTCAGC
CTTCAGCTTTAATTTGGACAGAGTTCATGCCATGCGTGTAGTATCACTATTTCGTGCCGA
CAGAAGATTCTCCTAGAGATGAGGATTCTCCTAATTTGTTTGAAAACCAAGGAGAATAAG
CACTTCTCGAGATCAACAAGGATTAATACTGTCATTTCATAAGAACACGATTTAAAGGTA
ATGCTATTATTGACTTATTTACAGTCTAGCTAGAATCATTTCTTGCTTAGTCGTGACGGC
ACGGCAGCCAGGGCCTAGCACTCGCAGGCCAAACCGCTGCATCATCATCATCATGGCAAT
AGCGAGAAGGGAAAACATTCGAGGCTTGGCACCTGCAAAGGCCCAAAATTGTTGTATTAT
AACTAAAGTATAAGCAATAATCTCCTCAACGGCACGTTCCTGTCCATCCGTCTATCCACT
TGGTGCATGAACCTGATGAATATATGGTGCACTAGAGAACAACGGGGAAGAGAACGTGTG
AAGTGTACCACTGTACAGAACAAGGCGTCTGGCCCCGTCCGTCCCTCTCCTCCAACTCGC
GACGCAACAAACAGGAAAACGTGGTCAAGCAAGGAAGGCGAGCAAGCCATGTTCTCTCTC
TCTGTCTGTCTCTCTCTCTCTCTCTCACNNNNNNNCACACACACACACACACACACGATG
ATAGCTCTGGTTCCATAGTTGTCGTCTTGTCGAGCCACCCAAGGATCGATCGATAGCAAC
CAAGAAGAGTTCTATTAGCATCCCCAAGTTCTCCATGCTATCGTTGTACTGTACTGTACA
CTTGCACTGCTAGGCCGCCGGGCTAGACGCTCGTAGCCATGTGGTGGAGGTTAGGTACTG
TACTGTACAAACCGGAGATGTTTACTGACTTATAAGCATGAAGCAAATGAGTGATGATTC
GATCTGATTGCGCCCTTTCGGCACAGCGGCGCACTATTAGCGCTGCGGTGATCTGATCAT
GTGTAAGCACGCCGGCCATACTGGTAGGCTACTGTACTCACAGGCAAAATCATGGAGTGA
AGGATTTTCTTTAAGAAAAATGCAAGGATGGACCCTCGGTTCCTATTAACAGAAGAAATC
GTCCGAGTCTTGGCTACGACGAGAAAAAGAAAAATGCAGAAACTGAAGCACACCTGCAAT
ATAGAGCAAGCAACCCACGTGCAAGCGAGAAGACATAGGACTTGTTTAGATGGTGCTGGT
TTATCGACAAAACCCTCTATGCCTATAAATAATTGACGGACGATTTTGCTGTCGGCGTAT
CGACAAAAAGTTGATGGGACTTGTGCGCACCAAATACTCACCCCGTTCAGTATCATAAGA
TGTTCTAACTTTAAAAAAAATCAGATGTATATAGAGACATCTTAATATGTTTATTCACTC
ACTTAGTTCATATTAAAATACTCAAAATACCTTATTTTAATATTAGACGAGTGAATTACA
AAAAACATCGACATTGAAGCTTAGGGTTGCAGGAACCACAATTCTACAAATTTGTGCCAG
AACCATTAATTTTAGGCTTTTTTTTGCAAAAAACGCTACTTGTCGCTTTTAGTCAATTTA
ATGATAATTATGACAAATGGAGCCCGCAAAAGCTGGCGTGGCATAACGGAACTGTACAAA
CGGCGTATCTACATTTACATAGACACCCTTCATGCAAAAATAAAAACGTAATCGGGTCCT
ACCCAAGCAAAAACTGCAGCACACCATGACAGCGTTCGTAGGGACTCGACGCCGGCCAGA
TACGAGTCCTCATGACCTTCATCTCCAATGAAGGATGCCAGTAGCCAAACCCTCCCCGTG
CGTCGGCGGCCACAGAAACCCGAAGCCGGAGCAACAGCTCCTTTCTCCGGCGTGAGTGTC
GGGCAGGGGCGGCGGAGGCCAATGTGGGGCACGACATGGGTGGCGACGAAGCTCGGTGAC
GGGAGTGAGCAGCAGTAGTGACGTTGGGCGCTCACGGGAGCAAGTAGTCGCCGCTTCGCT
GACCGCGCATTGGCGCAAGAAGTGGCAGCCGCGCCCCGGCCACGCGTGGGCACAAGCAGC
AACCGCCACCGGCCACGAGCAGCAACAGCCGCGCCGGCCGTGCAGTGGTGCGAGCAGTGG
CACTGACAGCAAGCAGCGGCGCCCCGGACGTGTGTGGGAACGAGCAGCTGCGCCCGCTGC
GAGCAGCATCAACCGCGCCGGCTGTGCGTGGGCGCGAGCAGCGACGGTGGCGGACAGGCT
CAAGGTGAGCTGCTCGGAGTGGAGCACGACAGAGCTCGTGGCCCGGCTGGCGCACGGGAG
CTGCTACTGACTTGCACGCCGGGGAGCTCGAGCTCCACCGGCTGGAGCATGGGAGGCCTG
GCCGAGATAGTGAACGGCGCGGTGGGAGGAGGAGGTGGAACCTTACTCTCCCTTCTTTTA
CAATGTAGTCCCTTAAATTTTATTTTTTTGTGATTCGTTATGTTGTGCCACATCACCTTT
TTCTGCGGGGCCCATCTGTCATAATAATCAGTAAAACGAACGAGACAGATGATCAGTCTT
TTTTGCAAAAAATTAAAACCAAAATTAGTGTTTTTTGACACAAACTGTAGAACCGTGGTT
GTTGTAGCCCTAGCATTCAATATCAATGTTTTTTTGCAATTCACTCAATATTAAACGGAT
GAGTATTAGGTATCCATCTAAACCGTGGCTCGGTCAACACAAACTTTTTTCTTTTGCTAG
GCGTCTTAGGTCTCCCATCCAAATAGTCCCTGAAGCTATTCCTGTTATCACTCTAAGCTA
GAAAAATCAGCGCATAACCATATCAGTTTAATCAATAAAAGCAAGCCCAGTCTTCACACA
CTTCCTTTTTGATAAAAAATCAGGCCTACAAAGCATGGTTGGTTGATCGATCATAACATA
GGGCATTTTATATTTGTTTTGCAGAACCGATGCGTGAACATGATCGCGCATCTCTTCAAC
GCTCCTCTTGGGGAGACCGAGACGGCCGTGGGGGTGGGCACCGTCGGCTCTTCGGAGGCC
ATCATGCTCGCCGGGCTGGCCTTCAAGAGGCGTTGGCAGAACAAGATGAGGGCCGCCGGC
AAGCCCTGCGACAAGCCCAACATCGTCACCGGCGCCAACGTCCAAGTAATATAGTCGAGC
ACATCATAGTCTCCTTGGTTAACACTGGCACACGGTGCGGTGTGTTACCTTGCCAAGTTT
AAGTGGACTGATTCGATGGCAAAAATGAAATGAACGCAGGTTTGCTGGGAGAAATTTGCG
CGCTACTTCGAGGTGGAGCTCAAGGAAGTGAAGCTGAGCGAGGGGTACTACGTGATGGAC
CCCGAGAAGGCCGTTGAGATGGTCGACGAGAACACCATCTGCGTCGCGGCCATCCTCGGC
TCCACCCTCAACGGCGAGTTTGAGGACGTCAAGATGCTCAACGACCTCCTCGTCAAGAAG
AACGAGGAGACAGGGTAATGAATCTACTAACCATCCATGATCCTTCCACTGAGCTCCCAC
TGTATACATCACTCATGTAGATAGAGGTTGGAAGAAAATGTTCTAATGGATTATTGGGGT
TGGACGTGCAGGTGGGACACGCCGATCCATGTGGACGCGGCGAGCGGCGGGTTCATCGCG
CCGTTCCTGTACCCTGAGCTGGAGTGGGACTTCCGGCTGCCGTTGGTGAAGAGCATCAAC
GTGAGTGGGCACAAGTACGGCCTCGTGTACGCCGGGATCGGGTGGTGCATCTGGAGGAGC
AAGGAGGACCTCCCAGACGAGCTCATCTTCCACATCAACTACCTCGGCGCCGACCAGCCC
ACCTTCACCCTCAACTTCTCCAAGGGTTCCAGCCAGGTTATCGCGCAGTATTACCAGCTG
ATCCGCCTTGGTTTCGAGGTGCCAATCCATTTTTGTCTAAGCATTTCTCGCTTATAACGG
CATTTCCTTTCTGCTATGCTAACTATATCTGGTGCAATGATGCAGGGGTACAGGAACATC
ATGGACAACTGCCAGGAGAACGCAATGGTGCTCAAGGAGGGGCTGGAGCGCACCGGCCGG
TTCAACATCGTGTCCAAGGACCAGGGCGTCCCGCTGGTGGCCTTCTCCCTCAAGGACAGC
AGCCGGCACGACGAGTTCGAGATCTCCGAGTTCCTGCGCCGCTTCGGGTGGATCGTGCCG
GCCTACACCATGCCCCCCGACGCGCAGCACGTCACGGTGCTCCGCGTCGTCGTCCGGGAG
GACTTCAGCCGCACCTTCGCCGAGCGCCTCGTCATCGACATCGAGAAGGTGCTCCACGAG
CTCGACGCGCTCCCCTCGCGCAGCAGCGGGCCGTCCCTGCAGCACCCCAACGGCGACACG
GTGAGCGAGAAGGACCTGGCGAGGCAGCGCGAGGTGGTGTCCGTCTGGAAGAGGGCCGTC
GCCGCCAGGAAGAAGACCCAGGGCGTCTGCTGAGCAGAGCTGAGGCGGTTCACCTCGCCT
GCTGTCCGTGATGATTTTATTTCCGTAATAATTTATGCTATGCTTCTCTTGTCCGTGACG
GTTTTTAAGGGGCGGGATTAATAGTTCTTCTAGCTCCGTTATTGGATCCATCGAGTATTT
TCATGTATGTGTTGAACAACAGTAAAGTACTTGCATATTTGTGCACAAACACTAGAGTAC
GTACCTAGCAGCAGTTCTGTGTTTATTTGGGTTCCCGATATCTAATCAAAATCGATGTTT
CCACACACTTATTTTCAGTCGTGTCTTGCATAGTTTATTTTTGTGTGTGTGTGCGCGCGC
GCGCGCGTGAGAAAGCTTGCATAGGTTCGTTGTCGGACCAATGAAATATGCTATGCACGG
AGACTAGAGAGCTGCTAGCGCTATAAATATAACGGGTCCTT