morexGenes - Barley RNA-seq Database

Contig contig_48947
Source Contig contig_48947
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48947 (6767 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_48947

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64522	8	2471 bp	AK250601.1	Available	Available	None
MLOC_64521	2	2805 bp	MLOC_64521.1	Available	Available	LOC_Os04g02850.1, FRAME:+3, EVALUE:0.0, 13104.m00203 protein pentatricopeptide, putative, expressed
CDS Structure of MLOC_64522

CDS Structure of MLOC_64521

Contig Sequence (6767 bp)

>contig_48947 6767 assembly3_WGSMorex_rbca.fasta
TCCGCGGCCCCGCGCCGGGACGCCCGCCCCCCGCGCTCTCTCCGCGCGGCCGCCCTCCGC
CGCGCGCTCCTCCACCGCCCCTCCCCCGCCGTCGGCAATGCGCTCCTCACCGCCTACGCG
CGCTGCGGCGACCTCGACGCCGCCCTCGCGCTCTTCGCCGCCACGCCGACGGAGCTCCGC
GACGCCGTGTCCTACAACTCGCTCATCTCCGCGCTCTGCCTGTTCCGGCAGTGGGAGCGC
GCGCTCGACGCCCTCCGGGACATGCTCGCCGAGGGCCGCCACGACGTCAGCTCCTTCACC
CTCGTCAGCGTCCTGCTCGCCTGCTCCCACCTCCCCGGCGACGACGGCCGCCGCCTCGGC
CGCGAGGCCCACGCCTTCGCGCTCAAGCGCGGCTTCCTCGACGAGGGCCGCGAGCGCTTC
CCCTTCAACGCGCTGCTCTCCATGTACGCCCGCCTCGGCCTCGTCGACGACGCGCAGTCT
CTCTTCCGCACCACCGCGGCCGCTTTCTCCCCCGGCGGCGGCGACGTCGTCACGTGGAAC
ACCATGATCAGCCTGCTCGTGCAGGGCGGCCGGTGCGCCGAGGCCGTCGAGGTGCTCTAC
GATATGGTGTCTCTCGGCGTGCGGCCCGACGGCGTGACGTTCGCGAGCGCGCTCCCGGCG
TGCTCGCGGCTGGAGATGCTCGCCCTCGGCAGGGAGATGCACGCCGTCGTCCTCAAGGAC
GCCGACCTCGCCGCCAACTCGTTCGTGGCGAGCGCGCTGGTGGACATGTACGCCGGCAAC
GAGAAGGTGGCGAACGCCCGGAGGGTGTTCGACATGGTGCCGGAGCCCGGCCGGCAGCTG
GGCATGTGGAACGCCATGATCTGCGGGTACGCGCAGGCTGGCATGGACGAGGAGGCGCTC
GATCTCTTCTCGCGGATGGAGGCCGAGGCCGGGTGCGCGCCGAGCGAGACCACCATGTCC
GGCGTGCTCCCGGCCTGCGCGCGCTCCGAGGGGTTCGCCGGCAAGGAGGCCATGCACGGG
TACGTGGTGAAGCGCGGCATGGCGGGCAACCGGTTCGTGCAGAACGCGCTCATGGACATG
TACGCGCGGCTCGGCGAGATGGACGTGGCGCGCCGCATCTTCGCCATGATCGACCCCCGC
GACGTCGTGTCCTGGAACACCCTCATCACCGGCTGCGTCGTGCAGGGGCACGTCGCCGAG
GCGTTCCAGCTCGTCACGGAGATGCAGCTGCCATCACCATCACCATCATCATCATCATCA
TCGTCGTCAACGGAAGAAGGAGAAGCGCATAGGTGCATGCCGAACAACATCACGCTGATG
ACGCTCCTGCCGGGGTGCGCGGCGCTGGCGGCGCCGGCGAGGGGGAAGGAGATCCACGGG
TACGCGGTGAGGCACGCGCTGGAGTCGGACATCGCCGTGGGGAGCGCGCTGGTGGACATG
TACGCCAAGTGCGGCTGCCTGGCGGCGTCGAGGGCGGTGTTCGACCGGCTGCCGAGGAGG
AACGTCATCACCTGGAACGTCCTCATCATGGCCTACGGGATGCACGGGCTCGGCGACGAG
GCCGTGGCGCTCTTCGACGAGATGGCGGCGGGCGGCGAGGCGACGCCCAACGAGGTCACC
TTCATCGCCGCCCTGGCGGCGTGCAGCCACTCCGGCCTTGTCGACCGCGGGCTGGAGCTC
TTCCATGGCATGGAGAGGGACCACGGGGTCAAGCCGACGCCGGACCTCCACGCCTGCGTC
GTCGACGTGCTCGGCCGGGCGGGGAGGCTCGACGAGGCGTACAGCATCATCACCTCCATG
GAGCCGGGAGAGCAGCAGGTGTCGGCGTGGAGCAGCCTGCTGGGCGCGTGCAGGCTGCAC
CGGAACGTGGAGCTCGGCGAGGTCGCCGCCGAGCGGCTGTTCGAGCTGGAGCCCGGCGAG
GCGAGCCACTACGTGCTCCTCTGCAACATCTACTCCGCGGCCGGAATGTGGGACAAGTCG
GTGGCGGTGCGGGCCAGGATGCGGCGGCAGGGCGTGGCCAAGGAGCCCGGGTGCAGCTGG
ATCGAGCTCGACGGCGCCATCCACCGGTTCATGGCGGGCGAGTCGTCGCACCCGGCGAGC
GCCGAGGTGCACGAGCACATGGACGCGCTCTGGGAGCGGATGCGGCGCGAGGGGTACGCG
CCGGACACGTCGTGCGTGCTCCACGACGTCGACGAGGACGAGAAGGCGGCCATGCTCCGG
TACCACAGCGAGAAGCTCGCCATCGCCTTCGGGCTGCTGAGGGCGCCGCCGGGGGCCGCC
ATCAGGGTGGCCAAGAACCTGAGGGTGTGCAACGACTGCCATGAGGCCGCCAAGTTCATG
TCCAGGATGGTTGGGCGGGAGATTGTGCTCAGGGATGTGAGGAGGTTCCACCATTTCCGG
GACGGCTCCTGCTCATGTGGAGACTATTGGTAGAAGAAGACACTGGAATTTTGTATCTAC
CAGTACAATGTCCACTTGACAAAATCAAAGGAAATATTCTTTACTTAGAATATTCTTTAT
GAAGTGAAATACTCCATCCCAAGACAAAAACATACTTTGTTTTCGGCTATGAAATTCTAG
CAAATTCATTCCAACGTACTCCTTCTCTTCCAAAATATGAGGTGTGTTGATTTTAAAAAA
AAAGCAAACTACTTAATGTTTCAGCAAAATATCAACAAGTACAATACATAATCAGTATCA
TCGGATTCATCACTGATATTATAGATGTTTGATATAATTCTCTACAAACTTGGAAAAAAT
AGTATTTTTTTGACCTATTCAAAACTTAATACACCTTATATTTTGGAACAGAGGTCAATC
AGGCAGGAGATGAGATCACCAGAAATTTCTACGCATATCGCACACATAACCAGACATAAA
TAGGCACACAGATATACGAAAACGACACGATTTAGGCACAAAGCTGGTGTCAAAGGACAG
GTATAACTTCTTAGCACACAGGGCAAAGCAGGTGTCGGAGGACATGTCCAACTTCTTATA
ACACGGTGTCAGCTAAACGATAAGGTTCGGTACGGGTACAGAAGTGTTCTTGTTTACTAA
TGCTAGAGCTGGAACAGCAGATGGAGGCGGCCTCACTGCCATAACCGAGATGATTCTCGA
TTAGTCATAACCCCTTCTGTTGGGAGCTGGGGATCTTGAGCGCTGGACAGGAGATCGGCT
GCAATCATACAAGAAGATTTCATCAAACAAGAGAAAACAGATAATGTTAACAAATGAAGG
ACTGGATAACTTTCCTAACAGAAAGAACTGCATACTCAATGCTTATAAGAAGAGTTCTGC
AACGTTATTGTTTTTTTTTTTTTTTGAGAGAGAGAGAGATGCAACGTTATTGTTTAGATA
CCAAAGATCACCAAGGAGTAGCTTGCAGTAAAGTAAGGACTAATCACCGATGTCAGAAGT
GAATCATCATAACAATATAGGAATCAGATAGTGTACACGGCGGTAAATGTTTTCTCACAA
AAAAAAACACAATACTAATCAATCTGAAGTGGTATGGCAAAATCGAATCCTAATGAAAGC
ATCTGCCAGCAGGACTAAAAGTGCAACCAAACAAAGATCAAACGAAAACAATATACAAGT
GCAACCATATGAAGATCAATAAAAAAATGCAAGTGCATTACCTTCGATAGCGATCACGGA
CAGGACTCCTGCTCCTGCCATATGCACCATACTGAGGACTCACTGGACGACCATAGTCAG
GACTAGGTCGTGACCTTCGGTACACTGGGCTAACAGAACGGCGATATGAACTGTCATCCT
GCCTTCCATAGCCACCACCACCTCTACTTGGCCTGTCATACTTGTCACCTGGTTCACTAT
CATCCCTGAAGGCATACTCAACAGAAATCACCCTGTCCAGTAACTTCCTGCAGAGGGGAA
AAAGGGTCAATCAGGCGTAACTTTACACTGCACAGCTATTTTCAAACAATCCATATTACA
TAAGCTTATGAAACAGCATGAAATACATGTATCAAAAACTAAACTTCTGTAGAAAAACAG
GTGGAAGTGGTACCAATTACCAGCATGCCAACTGCAGTCAGATTCTGCTCAAAAACTGAA
CTTCCATAGAAACAGGTGAAAGTGGTACTAACTACTACCAACATGCAAACTGCAGTCAGA
TTCTGCTCAAAAACTGAACTTCTGTAGAAACAGATGAAAGTGGTACTAGCTACCAACATG
CCAACTGCAGTCAGATTCTGCTCACTGTACAAACTCAAAGACAGGTGGAAGTGGCACTTA
CGTCAAATGAGTAGCATCTAGTGCTTTTGAGGCTTCTTCCTGAGTTTCAAATTGCACAAA
AGCAAAGTTCTTCCTTATCCGAACATTTGAAATCCTCCCAAATGGATCAAAATGCCGTTC
AAGATCACTGACTCTTGTGTTGATTGGGTCAAAGTTAATTACAAACAGTGTCTTGGTGGG
CTTAGTATTCACTGGTGGTTTACTATAGCCATCACGGTCATCACGTCTGGTTCCACGGTC
GCCCTGTTACCAGAGAAGGATTACAAAATGAAATGAAGCTAATATTATTTCAAATACCAC
CTAAATGAGACGCTCGTCAGCATACAACAGCACACAGTTTTATGACTTTCTCTGTGTTAA
GGTTTAGTGGAGTTACAAGACCAGCAAGAGAAATTACCCGTGACCACTCCACTGAAAGTC
TGCGTCTCCCTGGGCCAAAGGGATAACCATCCAGAGCCCGTATGGCATCATCACCATCAC
GTTCATCCTCAAAGTAGACAAAAGCAAACCCTAAAAAAGGTAACTCCACAAGTAAGAAAC
ATAGGAAATTTGATCATGTGCCAGCCATTGTTCACCAACAATATTTTTTTATTGGACAAG
CAACTAAAACACATGAGCCAAATTCAGTCAAATTCAAACCTAACATAAATAGAAAAATAC
TGCACCTGCACAGATCTGATGGTATCAAGAGCTGTAGTGAGGTTACTGGTAGATTCCATT
CATGGTGAGGCTAAGCATGGTGTTGTACAACTTATATCCAAAAGTTCCAAAGTAAGAAGG
TATGACTGGAGGCACTGAACATGCTTCACCATTCTACAGACCAAGAGCCTCACAGACATT
GCTTACTGAGACAGCACACATAGCAAGTAATCAAGTTGATGCCTGGAGGATACTTCTAGT
CATGGCATGGTATGGCATGATGGAACTGATGGCATGGCACGAATCGCATGATGATTGATG
TCAGTCCCGGCAAAACATGCTTGGCAGTGGTAACATGTTACAGTGCATCAGGAAAACGGA
TGGCCAAGTGCAGGGAGTGGTGGCCGGATGAGTCAGGAGTGAATGGAGGGTGAGTTGAGG
AGCCCCGGGGGGAGCTATGTATGTTTGCCTCGGTGGTTCCTGCGTCAGAGTAAACATTTA
AACATCGTTGCTGCCAGCTATGCATACATTGCTTGCAACTACTTTTTTACATGACATGGA
CCGCCATATAATTTCAGATATGTGTTCCACGCCATAAACTTTACAGAAGCATAGCTAACA
GAGATTAACACCCCAATTTGGGGCATGACTAATACTCAGATCCTCTGCACAGATTGTGCT
TTGTCTAAGGTGCCAAAAAACAAACAGAAATCATGGACCACCATATATATGTTGAGACAC
CGCCACAAATTTTACAGAAGCATAGCTAACAGAGATTAACAAAGCAAAATTACCATGATG
ATTGAATCATGGGTTAATACCACCAACATTCAGATTACAAATCATCTCTAGAGATCATGC
CAGGTGTAAGGTGAAAAGAAACATGCATAAATAAAAACCTTCAGCAAACAAATTATCTCC
AGGATTGTTCTCTGATCAATTTAAACAAATTGCACACTCTAATGAGACAAAACATTACAA
GTAGAGTTAAATTCGTTCTTCCAGCTCTCTACCCCGGAAACTTAGCATATGAACAGATCA
GCCCCAGGTGATGAGCACCGGTGGGGCACAAAAGCATCCGACCGGCCACGATACACCGGC
AATGCGCATAGGCGTCAAAACAGGGGTGGCCATCACGAAATGAAAACCTTATACAACTTC
ACATAAGTGTCCCACGACATATATAAATTTCTAACAGAGATTAGCGAAGCACTATAATCA
CAAGAGTTGCATTACTGATTAGTACGGCTAATATTCGGATTTCAGATCATCTGTGAAAAT
TATGCACAGATAAAAAAAAAGTTAAGCAAACCGATTATGTCAAGGATTATTCCCTGATAA
TCAATTTATATATATAAAGCTAATAATTACAGGTTAAATTCGTTGCTCCACCTTTGTGGT
CATCATGAAATCGAAACCACATACGGCTAGACCGACATGCAAGCTCACGACTTGACATGA
GTGTCACATAGCTAACGAATACTCCGTCCGTCCCAAAATTCTTGTCTTAGATTTACCAAA
ATACGGATGTACCTAGTCACATTTTAATGTTACATACATTTGTATCTTGACAAATCTAAG
ACAAGAATTTTAGGACAGAGGTAGTATTAGCGAAGCAGCAAAGCAACCACGGACCACAGT
GAGTGCAGCACAGATTAACACGACTGACATTCGGATTTCAGATCATCTCTAGAAACTAAT
TGTGTTTGGTGCGAGGGTGCCAATAAACATGCACGGATAATAGATAGAAAACCTATAAAG
CAGACAGGTTATGCCGAGGATTATTCTGTAATAATCAATTCGGAATAAATTAGAGGTTAA
AAGATGTGACGGCGGAGGGGAGGACCTGACTTCATGTCGATGCGTTG