| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_48895
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_64485 |
2 |
3469 bp |
MLOC_64485.2 |
Available |
Available |
LOC_Os04g34630.1, FRAME:-1, EVALUE:4e-141, 13104.m03365 protein peroxidase precursor, putative, expressed |
| MLOC_64486 |
1 |
1470 bp |
MLOC_64486.1 |
Available |
Available |
LOC_Os04g34630.1, FRAME:-1, EVALUE:0.0, 13104.m03365 protein peroxidase precursor, putative, expressed |
| MLOC_64491 |
3 |
3866 bp |
MLOC_64491.2 |
Available |
Available |
LOC_Os02g08230.2, FRAME:+3, EVALUE:0.0, 13102.m00949 protein WAX2, putative, expressed |
CDS Structure of MLOC_64485
CDS Structure of MLOC_64486
CDS Structure of MLOC_64491
Contig Sequence (7442 bp)
>contig_48895 7442 assembly3_WGSMorex_rbca.fasta
CATGATGCTAAATGGACGTATCACTGATGACTAAGCGAGCCATCGATCTTTTGATGACCC
CACATCGGAACTCTCAATGAAAGCACGAATGTTGGTGTCAAAACTGGTGGATCTGTGGTA
AGGGGTCTCGAGCTGTGGATCTTGGATCAAGACAGTATTTACCTAGGTTCAGGCCCTCTC
GAAGAGGTAAAACCCTTCGCCCTGCTTGATTATAATGATGTGTGTATGACAATTAAAGAG
TCGATCTACCACGAGATTAGATGAACTGAACCCTAGATGAGTAGGATAATGGTTCCTCTC
ATCTACGAACTAAAGCCTCTGGTTTATATAGACACCAGGGGTACCTAGGGTTAGACATGG
TCGGTTGCCATCAGGGAATCAACATGCCAATTATGCATCTTGCCTTGGAGGACACACCAA
GCCACCAGAGGTTTCCTTCCTGAACGTGGAGTCGCCTTATAGCTCAGCCTTCAAGTAACA
GCCACATAGCGGTCCACCTGTCCGACCCATAAGAGATAGACCGGCGGCCCGAGGACCCCT
TAGTCCCGGACCCTCATCCATTGCGATGTTTGCGGCGGAAAATCCATACCTCGTGCAAGA
CGAGTAGGAGTTTGGGGTGCCGCGTAGCAACGCAAAGAAGGACGTGGAGGAGGAGGAGAA
TGAGGATCAGGACGAGGCTGCCTCATCGATGGCGATTGAGCTTAGTTCAGACTCGGTGAA
GAATGAGGAGGAAGACACGTGCTGTGACATTCAATGAGACAACCTAAGTAGTTTGCAATA
GCCTATAGTCATAGTATCTTCTCTATCCAAACTATGTTTAAGTTTACGAACTATGTTTTA
AATTTCCATGTTCAAAACTCTATGTTTGATCGAATTTGCAATGGTATTGTCATTTTCATG
TCCAATATAAGAGAAATGTGGGAGTAAATTGATGCCCTATTATTGGGTTGTTGTTGGAGC
TAAATAAGCCATGCAATATAAAACTACTTTTGTTATGCATGTATTGGGTTGCCATTGCAG
ATGCTCTTACTAGGCCTTGGATGTCAGGCTCATGTTCCGTGACATTAGTTAGAGAAAATT
TATTTCACTTTTGAATGTAGAGCTGCTAATAGAGACGCTGATAGGTTAGCCAAGTTTTCT
CACTCTCTAAATAAGGGGCAACAAGTATGGCTGGTTGCACCACATGATCATTTTTGTATT
CCACTCCATGTGAACTTTGATCAATAAAGTTTGGTTTTAACCCCTCAAAAAATGTTAGAG
GAACTTACAATCATTTCTCTCTCGATTTTTTAACTGATCAGGCATTTTTCTTATTATTAG
TTAACATAGAAAACGTCATTGGACTCGCGTTAGAAAATACAATGAACCATCCTAAATGCA
AAAATATTCGCCTAGCTCCCATTCAATAACATTATTTGGACCTCCAATCGTCGAGCTCGT
CGCAGTTTGCAAGATCAACCATCTCCATTCTACAAAAATTACTTGACTCCCTTCTACGAA
AATATGATCCGTTATTAATGTCCTTTTAAACAAATAAATGAATAAAACAAGCACACATGT
GGAGGAGGACACCGCACTAGCACGTGATACTATTGGAACCCCTAACTGCGTTCCTGGACC
CATGAGGCACTACCAATGCATGAGTCATGACCATGACCGCGTTTCAGACCAAATAAAAGC
CTCTTTTTTGTAAAGAAACAACAGAACATCAAGTTGCTTAGTACTCCTCTGTAAACTAAT
ATAAAAATATTTAGATTATTAAAGTAGTGTTTTAAATGCTTTTATATTAGTTTACGGATG
AAGTACTCCATATTAAGCAACACACAAAAACGAATGTGTCCTTTTTATTGTCTTATTAAG
CTAGTATTTGTGTTGTGTCCACTTGTTTCGGTGCATCTTGTATTCTAGTACGAAGTGTTG
GATCTGGCACTGCCAACGCGCAGTTTAAACATTTTCTGAACAAAGCATAGGCCAGCAAGA
TGCCAAGAGCAATCATCGCGAGCTAGCAAGCAAGTTCGGTGGCGATGGCCGATCGCGGCG
GCAAGGCGCCAGTATCGACACCGACTGCAGCCGCAGACGTGGACATCGATGCGGAGGTGG
TCATCGTCGGCGCCGGGATCGCGGGGCTCGCGACCGCGCTGGCGCTGCGGCGGATCGGCG
TGGGCGCGGCCGGCGGAGGCGTGCTGGTGCTAGAGCGGCACGCCGAGCTGCGCTCCACCG
GCGCCGCGCTCACCATCTTCCCCAACGGCTGGTTCGCGCTCCGCGCGCTCGGCGTCGCGC
ACAAGCTCACCTCCCGCTACGATGCCTTCGAAACGTGCGTCTCCGTTGCCGGCCATGATT
GTTGCTCTCCAAGGATTTTTGTCCTAGTCTCTTGTTTGTGATTATTGCTCTAAAATCAGC
CAGGTCTGCTGCATGCAGATCCCGAGTGACAACTCTTGAAACTGGAGCGACGCAGGTGTT
CTGCTTTGCTGGGCGCAAAAGCAGGTCAGTGACAGTCGTGGCAAATTTTCTGTCGGATTC
CGCCGGAACTTAAGCTAATCCGTCTAGCTAAAGCAGCGGCGACGTGAGAGTGAGACCGAT
GCATCGGAAGGCGCTGCTGGAGGCGCTCGCAGAGGAGCTGCCTCCGGGCACCATCAGGTT
CTCGTCCAAGCTCGCCTCGATCGACACCGAGAAGGCGCAGGGTTCCCCGGAGGTCGCCGT
CCTACGGTTAGACGACGGCACGGTGATCCGATCCAAGGTACACCAATGACCCAACGACGC
ACATGTGACATGTGAAGATTAGTAGTACGTATTACCATAAGTGGGTTTGCATGTTCATTA
ATTTGAGCAGGTGGTGATCGGGTGCGACGGGGTGCACTCGGTGGTGTCGCAGTGGCTGGG
ACTGTCAGAGCCGGCGAGCTCAGGCCGGTCGGCCGTCCGCGGGCTCGCCGTGTACCCTGA
CGGGCACGGCCTGAAGAGAGAGCTCCGGCAGTTCCTCTCGGAGGGCCTGAGGGCCGGCAT
GGTGCCCATCAGCGACACCGACGTCTACTGGTTCCTCGTCAACAACACCGTCTCCGCAGA
GCAGGAGGCCGGCACGGACCCCGCGAAGATCCTGCGGGAGGTCACGGACAACCTGGGCAG
GAGCATGCCGGCGGAGTACCTGGACGTGGCGCGCCACTCCGACCCCGGCAACCTGTCGTG
GGCGCCGCTGCTGTACCGCGCCCCTTGGGCCATCCTCAGGGGTCCGGCGGCACGCGGGCC
GGTCACGGTGGCCGGCGACGCGTTCCACCCCATGACGCCCGACATGGCGCAGGGCGGGTG
CTCCGCGCTCGAGGACGCCGTGGTGCTCGCGCGCGCTTTGTCTCGGGCAGCCACGCCCGC
CGACGGCTTGGCCGCCTACGTGGCGGAGCGGCGTGGCCGGGCTGCCTGGCTCGTCGCCGG
GGCTTACCTCTCCGGCTGGGTCCAGCAGGGCGGCACCAACGTCCGGGGCGTGCGAGGGTA
CATGGTCCGGCTGTTCCGTGACTGGATCTTTTACAGGTTCTTGTTCCCCAGGCTCGCCGA
TACAATGTGGTTCGACTGCGGCGACCTGGTGGAGGAGCCCAAGGTGGAGGGCAGGGGCAA
GACCCACTCGGAGTAAACTGAATGATGGTATACTCCTTATGTGTTATAGCCCGTGCATCA
TATGAAAGCATTGGTGTGTGTTTTATATTAACTCACTCTATATTACGTGAATAATTGCAG
CATTGTAGATACAGATTTTCATAAACTGTTTTTATAAACTCGATAAGTTTACAAAATTTA
GCTTTGATTTTTTTTTTTGGAAATATGCACTACATATATCTTAAAACAGATGGAGTATGC
TGTATTTAAAACATATCTTAAAACAGATGGAGTGGAAGGGAGTGGAACAGAGATATCCAG
TTGAACAAGTGACAGTGACAGGCACAACTCATAAGCACTTTATTGGACCATTCCTTGGTA
CAAGTAGGGCACACTGCACAGATGAATATCAACAACTAAAGAAAAGGAACAAAACACGAC
CGCAACCATTTTACGGCGCAACACGAATAAGGAAATGCAATAATCACACGCATGCACTTG
AAAGAAAGAAACATTGCAAATCAAGAAAGAAGCTCGAAGCACGACCATCGAAATCACCGG
GCCAGCTTCGAAGAGTGTCGCTCTGGATGGGTTTGTTTAGAATTAGAAGTGGTTGACCCT
CCTGCAGTTCTTCCTGATCTCGCCGTTTTGGCCTGTGAGCGGCGAGATGTTGCCCATCTT
GACCATGGACTTGGCGAAGTGGTCGAAGAAGAGCTCGTTGCTGGCGGCGTAGCTCTTGAC
GAGCTCCATGGTCTCGTGGCTCTGCGTGAGCAGGACCTCGTCGGAGTTGAGCAGGCCGTT
CATGGCCAGGATGTTCTTGTAGTACTGGTTGTCGAACCGGAACTGGGTGGCGGGGTCGAG
GGCGAACAGGATCTGGTCGCCGCCGGACCGGGGGCACCGCCCGCGGAGCTTCGCCGCGTA
GGCCGGGTTCAGTGTCGGGTCCGGGCGCCCGTCGTTGTTCTGGCTGTAGAGCCGCTGCCG
GAAGCTCACGCAGCGCGAGTCGCCGATGGTGTGTGCTCCTGGATTGTTCATTGCATACAC
GACATGTTACTTACTGTACATCACATGCCCATGCGGAATGGCAATCAAATCAAACACCCG
CCAACTGCATGCGTGTATAGTACTGTACCTGAGAGCGCGACGAGGTCGACGACGTCGAGA
CCCTGGTTGCGGAACTTGGCGGTGATGGTGGGGAGGGTGTCGTTGGGAGCAGGGATGAGG
TTGTTGGAGCCGCTCAAGCTGGCGGTAAGCGAGTCCCTCCTCCCCAGTGGCACCTCCCAG
CCCGGCCCGCCAGTCTGCTCCACCGGGCAAAGTTCATCAAGTCAAATCAATATTCGTTTC
TGAGAAGGCAATGCTCACGTTGTGTTGTTATTAGCGTGTTGGATTGCTGCATACCAGCAC
GGTGGAGTCCCTGGCGGCGACGGCGGCGATGTCGGCGCAGGAGACGGTGTGGGGGCAGGC
GTGCTCCAGGGCGGCCTTGATCTCGTCGATGACCTCGTAGCCCCTCAGCGAGTCGCGGTT
CGGGTTGGACCGCTTCTCGGTGGTGAACCTGCCGCTGCCGTCGGCGTCGAGCAGCACCGA
CGCGTCGCACCCCTGCACGAAGCAGTCGTGGAAGTGCAGCCGGAGCAGGGACGCCGCCAT
GCGCGGGTCCTTGGCGTGCTCCTTGGCCACGATGGCACCCACCACCTCCAGCATCTGCGG
GCACGTGTGCTCGTAGAACTGCGGGATCAACGGGCCTGGGACTGGGAGCGGCGGGTGACC
CGCAGCGCCCGCCGGGAAGAGCGTGGACACGGCCAGCGCCGCCGCGACGGCGACCGCGAG
GCCGCCGCTCCAGTGCAACGCCATCTTCTCTTCTCGCGCTTGATCACTAGCTCGATCACA
CTCACAGCAGAGTAGAGATGGCACGATCAACGACAAGCTCTACTGATCTATGTTGGTTTG
ATCGAGGAGTTACGAGGATTGCGTAGGTATTTATAGAAGCATACTGCACACACATGTAAG
TGTAACGGGGTGATGAGAAATTAAGGGCTGCTATCGTGATAATCTGGCAATGTTATCTTA
ACGAGTTTGAGGGAGCCGGTAATGGCCTTTCCAGCACCCTTCTCATCTCCTCCATTGCAG
CTTTAGCAGAGTAAGTACAACCTATGCACTTGCACATTCGATTCAGGTGCACGTACACAA
GAAGACAGAGCACCGGTGAGAAAGGCACCAGATGCCACCTCTCTAATTATACGAGTAGAT
GGCATGACATACATCCCCTTAGCATGGCAGCTAGAAAGAGCTTAATTCACCTAAATGCCT
AATAATTTTTGCCGCCCTTGTTAATATACCAGGAGGCTCTAACTGTTGGTCCCTGGAGAA
CAAATGACATCTTCAAGGCAGTAGTCTATATTATACCGAGGGTCACTGACAACATAGTTG
AAAGGTAAAGTTTGACTCACAGCAATCCTTCAATATGAATACCAAATTCGCATATTCTCT
TTTCGACACATTGGAGCACCTCTCGATTAGCTTGAGCTCGACATATTAGTACACGTAGCA
TACTTTCAAGTACAGTTATATCGGGTACCTCTGAGATGAGAGTAACTGCATAGACTTTAG
TTGTAACTTTTTCAAAGTAAAAGTATCAATCCCACGGAAAGCATATGAATCATTCGTTTG
TCTCTTGTAGGGTTCAATAGCTATGCTTGCAAGTTAAAAGAAATCCTAAGCAATAGTAAT
ATGGTGAAGGTGGTGTAGCAAACAGTGTTACTAAAGTAAAACAAAGTAACAAGAGAAGTG
GTCGAAAGTTGTTAAACTCGATAGGATTGAGGCATTCTCAAAGAGTTAGGATACCCCACT
AGTGTGTGTCTAATACCGGTGCCTAAGCATAATGCTATGTCGGATTCTAAGCAAGTTTAT
ATGGGTTTTTTTTGTGGGCGGAGCCGGTAGAGATAAGTGCATACATACAATAACCCCGTA
TCACATACGTCACCACTGTATTACCCACTCTCGTTACCAAATGATGATTAAAGGGCAAAA
GGTCCCATGCATGCAATCTATAAACGGTCTCCATTTATCCCCTGCTGCACCGATCTGGGA
GAAAGGGAGATAAGCGATGTCACTTACCTACCTCTGCAACCAGCCGGTTCGCCAGTAGTA
ATAACTTTCCATCTAAAATTGACATATGTTGCATGATTGACTTCCCCCGACATCAAGAAG
ACTATTAACATAAACATATCATGAGAATATCAAATCTTAATACCGAACAATCTATTACAC
ACTAGGGTTCCTACATATCCAGAGAACTGTGGAAACTACTCACACATCAATGGCACAAAC
GAGATGAGGGGAATTATGATGAGCATGGTGAGCTCACACAAGTAACACAAGATTGAATCC
ATTCCAACTAATGTATTGCAAATGGATGGGGATGATATGATGATGATAGTGGTGATGATT
GGCTCAGCGGCCCAGTCGTGGCGACTCCCTGCTCGTGTGCGGCTTCCAGGTCCGACCGGC
GCAGGTGAGGTGGGGTGACGTCCCACCTAGCTCTGCTCGTGGGCAGCGACTCGGCGGCAT
GGCGGCTTCGGCGGTCCTGCGGCTGTGGTGTTCCGGTGGCTTCTCCATGGATGACCTTAG
TGCTGTGCCAGCAGCCCCATGTGCAGTGACAGTGGCTACCTGCGCGGATGCGGAGAGGTG
GCGGCTCTCTTGCCCCTGCTCGTGAATGGTGTGCTCGCTTGAGTGCTTGTTGCGTGCTGG
TTGCGGTGCATTCACTGTTGTTGGAGTTCTGGGAATGGGGGTACACAGACCTGCCTGCCT
GCGGCCCAGGGTTGTCCCACTTCATCGACCAAAAACCAACAGGCCCGGCATCACTCAAGG
CA
