Map Locations of contig_48859 (8422 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_48859

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64462 1 319 bp MLOC_64462.1 Available Available None
MLOC_64461 3 1576 bp AK369097 Available Available None





CDS Structure of MLOC_64462






CDS Structure of MLOC_64461






Contig Sequence (8422 bp)

>contig_48859 8422 assembly3_WGSMorex_rbca.fasta
CCAATCCTCGGGCTTGGTTGAGCCATTGTACTTGGGGGTGTCGCGCGCCAAGGNNNNNNN
NTTGGGGAAAGGCTCCTTGAGGATGTGTGGCCCGAAGCACGGCGATCCGGCAAAGCCTTC
CTCCTCGGCGGCGTGGGATTGGGCGAGATGCTCCACGCGGAAACGCGCGTCCTGTTCGTC
AAGCTGGCACACGCTGATTCACTAGTACGCCGGCACGCGAGGCGCAGCCGACCAGTCGCG
CTCCTCGCGTTGTCCGCTTTGTGCCGACTGGTAGTCGCCTTGGCCATCCGGCACCCACAT
GCGGTTGTCGAAAACTGATGGGCTACGGTCCCGTTGGTCGTGGCTGCTCGCGTGTCGGTC
GTCGCGACGGTGGTGGGTGTTGGTAGGCGAATATGCCTGGTTCGTCTCCCACCAGCCGGC
TATGGGTTGGCCGGCGTCGTCGTAGGTCCTCAAGCGGGAGCCAGCCGGGTCGCGGGATGA
GTGGGTCTGCTGCGCGTTGGCGGCCTCTATGAGGACGCGGATGCACTCCTGCTGCGCGTC
GTGGGCCGGACCCCCGAGCCCTTCTAGGTCGCTCATGGCAGCCTGCAAAGATCGCATGTT
CTTAACGAGGGTATCGTAGATGGGGCGGTCGCCGGCCAGCTCCTGGCCGACGATGCCTCC
ACGGCGTCGCACATACGCTATCCGGCTGGGCCCGGGGGCAGCCAACGTGAGACCATGGGC
CGCGTTGAACTCATGTCGAGTAGCCTCGAACTCGTCCTTGGTAGCCTCCAGCACATCCGC
CTCGCAAAGCAGCTGCACGCGATGGGCGTCGAGCTCTTGCGTGGCGACCGCGGGGTCCTC
CACTGGAGGGATGGGGGTGCGGAGCGTGTCCACCGTCGCGCGAATCGGGGTCCGTTATCC
GGATGCGCCGCCTAGCGAGGTGGCGGTGAGCACCTTCACACGGTCGCACAGATCTTCGAT
GCTGCACGAGAGGTCGTTGTCTCCGGCTGGCGGCAGCTCTTCGCAGCTGAGCACCTCGGT
GGGGTAGCTGTCAGCGACGACCACTACGTAGATGTGGTGCGAGCCGAAGGAGATGATGGA
GCCGTCAACGGGAAAGTCCTCATCCTCGAGACGGCGGGCGTTGTCGTTGATGCAGTCAAG
CGCGTCGTAACGCACGACCAAGCCGTGCGCCACGCGCCTCGCCAGAAGGGGTGAAGGGTC
CCGCCCGGAACATTACTCCGGTCGACGTCGCTGCTGGCCCCACGGTGGGCGCCAATTGTC
GTGATATTTTTGGGACATATGTCAGGGGTGGCTTAGTTCGTGGTTTGGGGCCGATGGGCG
ACGACAGCGTCGGGGAACATGTGTAGGCACAACACACATGACGCTGATCTACCCAGGTTC
AGGGCCCTCCGGCGAGGTAAAACCCCTTGTCCTGCCTGTGTGACTATATGAGAATCAGAG
TACAAATGGTGCTCCTTGAGCTGTTCGTGAGGACGGAGACGGAGCTCTCGCTGCCTGTCT
CGCTTCCTTAGTAGTGTTCTATGTGTGTCTCTGCGTTTGTCTGGGCGGGAGTGTGAGTAT
CAATCCACCTCTCTCAGAGGGCTCGGGTGAGGCTTTATAGTGCATCCACGGGGTACAGTA
GTAAGGGTAGGACAGGAGATGGGGACCGGTTGTCAGCCTGTCGGGCTGGCTGCGGGACCT
GCCGGCTATCGAGTCTTGTCTGGTGCGGGGGCCGTCGACCGTGTGCATCAGCGGCTCACA
CGCCGAGTCGTCAAGGTGCAGGCAAGGGGGGAACGTGGCTACACGGCCGTCTCGCCCGGT
CAGCGTCGTCGGTGACAAGGGCCCTCTAGCCTCCCTGACCCTCTCATCATCACGCCACGG
CCAAGCCAAGTATGTAAGCGCGTACTGCTGCTATGATAGCCCGTGCATAATTCGTCTTGT
CGTGTCTTCGTACACAGGTACGACCGGATGGGACGGGAGCCGGCTGGCAGCGGGCCAAAT
CCCGCTAGTCAACCAGGCATGCATTGGCTAAGCGCGTCGGCTATCGCCAGCCGGCCAGGC
ACGCGTTGGCTAAGTGGGCTGACTATTGCCAGTCGGTCGGGTGCGCGTTGGTCAATTGAG
CCAGCTATCGCGAGCTGGCCAGGCACACGCTCGCCAATGAGGCCGGCTGGGGCAGGCGGC
CCCCAAATGTTTTGGAGGCGGCTAATCTCCGCTCTTCGTATACCGAGGGGTAATATCCCC
ATCAAACGATGCACACACACCTTTTTGGGACTCCCTTTGGGTGCAGGACCGCAAACCAAG
GGACATCGCTCCACTTCTCTATGATGCCTCCTCGCGGAAGAGTTGGATACTCCGCGAAGC
CCTCGAGGATGACGCTTCGGTTGGCAAGATCAAGGTCACTTCCAGCTTCACCTTTGAACA
CCTGTCAATTCATCGAGCTTTGGTCCACCATCAGTGACTTCCCTCTTGAGGTGAACGCTG
AAGACGACATCGTGTGGAAGCACAGAGAGAGGAGGATATACACTACCAAGTTCGTCTATC
TTGCCCAATTCTTTGGCACCTTCCGCTCTCCCATGGAGCTTATGGAGTGAAGGGCTTGGG
CTCCGCCTAAGGTCAATTTTTTTGCTTGGCTGGCTATGCAAAACAAAGTTTAGACTGCTG
ACCGCTTGGCCAAGCGGGTATGGCCTAATTGTGGGCTATGCCCACTTTGTAAGAATTCAT
CGACCACCTCCTCTTCCAATGGCGGTACACTACTAGACTTTGGGGAATGATCAAAGATTG
GCTTCAACTCGAGAACATCAACACTTCTATTTGGCACTTTCACATTCGACCGAGGAGTGG
TGGATAGGCTTTCCGCCTCTGCCCTTAATTTTTTTGCTTGGCTGGCTATGCAAAACAAAG
TTTAGACTGCTGACCGCTTGGCCAAGCGGGTATGGCCTAATTGTGGGCTATGCCCACTTT
GTAAGCGCATGCAAGAATTCATCGACCACCTCCTCTTCCAATGCCGGTACACTACTAGAC
TTTGGAGAATGATCAAAGATTGGCTTCAACTCGAGAACATCAACACTTCTATTTGGCACT
TTCACATTCGACCGAGGAGTGGTGGATAGGCTTTCCGCCTCTACCATTCCGAATAGGAAG
GCCATGGCTACGCTCTCCATGCTCATCTCTTGGACAATCTAGAATGAAAGGAACGCTCGC
ATCTTCCATCTCAAGAGTGCTCCGTCGACGGTTCTACTTGCTAACATCAAGGTTGAGGTC
CAAACCTGGGTCACCGCAGATGCAAAGAAATTGGGATCCATCATGCCACGAGAGTAGACC
TTTTGTATTGATGTTGTAACATGATGAGCGTTGTAACACAAACTTTATACTCCTTTCCCT
CTTAATTAATGAATGAGGCAAATCTTTTGCCTCCTTTCTTAAAAAATATTAACGCCAGTA
CAATGTTTCGATGACAGTGGGACTAGCGATGAATTTCCTCTGAGTTACCAACGCAAGAGG
TTGTCTCATCCAATTTCATCGTCAAATATTACACCCATCTAAAACATGATTTTCTGATGT
CGCTACTCTTCATCGTCATCATCATCATTGGATTTTTCAACCTCTTCATTCTCGTACTCG
GAACCAGAGCCATCCACATCTGCAAATGGATTCTCGTCACTGCTATCATCCTCATCCTCT
GATTGTTCTTCAGGATAATCATAGAGTGGGTTGTCTTCAGCTGTTTAACACACAACTTTT
AAGATGATTTGTATAACAAAGATCTTACCAATTAATTGCAGAAGCAGAATGATTGCACAA
TTACCATTTGAATCATCAGTATCATATGGATACTCATCATCATCGTAACATTCGCCATCC
TCATCGTCCACTTGTAACCTAGTATAAGAAGACTGGTCAGAAGAGTCCCCACAAGAAAGA
ATGGAATCTAGTAACACGTTTGAATAAAAATTACAGTGGGTATGCAGCTGCAGATGCGCA
CTCCATGTTCGTATCATCCACCTCCTTGACAGTATATATGTCATAAACATCTGAATCTAC
TCATCAGGAAAAACGTTCATTAATATTAGTGCCCAAGCAAAAAATGCTTGTGATTACTAT
AAAATGCATTATTACACTTTGCTATCAAAACAAGGATCTCAACTCTTTCACACACACTGA
CACACTGTTAAAACTTACGTGGCATGGGCACCTAAAAGGAAAGAAGGTTACATACCTTCT
GACTGTGCTAGCGAAATAATATCAGATTCGATTTCTTCAGCAGCCGACGGCAAGTGCTCC
CGTAGAAGCGGAAGAAAATTGCATAAAATCGCACCCTCTTCAACAGAGGTCATCCTGCAG
AGAGCATCATTAAGAACCACATGATAGTTCACCATTTTGTTTTAGAAGAACTGATAAGTT
ATCCAAAACAGAACTTACTGTGGTTCTGCTGGATGCTTCTCTCCATCCGAATCTACTTGG
ACGGCATCATAAAGATGACACATTTCTCTCAGTGTTTCATCAGCCTCATTATTGTCTCCT
TTCCGACTCTTCCATATTTGTGCAAAGCGGGCATTTCTTCCAAGATTCTATATAGGGCCA
TTGACAAAAACTATTACCAACAATGAGGGAAACAGAGAACCAACATCATCCCCTGTCTTT
GATGGATGCGAAGAAAATAAGAACTTGGCAAAAAAAAGTCCTGCTGTCAAGAAAGCATAA
TAGCCTTCACCAGCTATGCAAAGGATACAAGCTATACATCACTATTCGAAAGAAAACACA
ATCTGATTCTCAAGCATACGAAAGGAAAAGAGCATGCTCTATGTTAAGGAGTATTAGTAT
TAGCCTAGGGAGTCCTTATTAGGCTATGTTTCCTTCTTTGTACCCCAAGTCTTGTGTGCT
ATATTGCCCCTTGGGCTATGCAATAGAGATAAGTCAAATCCATAACACGGTATCATGAGC
CCAGGTTTAGGGATTTTTTTTGGACGTCGCAACTCGCCCTCTCGATCTAATCTTACACCA
CCACCTTTCTCCTTGGCCGGTTGTGCTGAACTCCTCTCGCTGGCGCTGCTCTCCCACGCC
TCCCATCCGACTCCACCTCCTGCTGCTACAATCATCCGAGTCCACCACCCGCGGGTCAAC
CCTGCTGCTACTCCCTTCCGCCACGTCTCACCGTCGCCGGTCTGTCCTGGCGCGGCTTCC
GTGGTCCCGCCCCGATCCAATAGATAAGTTGCACCCATAACACTCTACACTTACTCAGAG
TCATGTATTAATTGTAGAAATTGATCATGCTATATACTCCCTCCATTCGCTCCATATGTA
GTCCATAGTGGAATCTCTAAAAAGACTTATGTTTAGGAACGGAGGGAGTACAACACTTGT
CCAAACCCTTCTCACCTAAAATAATTTTACTGTCCCTTTACAACACATTTGCTTGATCCC
AGCGGTGCATAATTAATACACATAACTTAAGGATAAGAAGTTTACTAGCCAGAATAAAAT
TACCTCATGCCTCTGTCTGGCTGCTGAACGTAGCTGGTCTTGTTTCTGTTGACACAAAAG
AGAACTATCTTAGAATTTGATCGAGTAACTTTATTCCAAATTCCGAATAGGAAGTTCTTC
TTATGACATTGTAGTTCAGCAGTGGATCTTTCGAATGCTCAATGAGAAAAAAAGGAAGGC
TTAATTATTCAAGTGGTCCTCAGGGCATAGTTTTAAATAGCGGAGATAACGGCCACTATT
GTGGTAGCGCTATTGCTGAAATTAAATGTCATTACTTTTTGTTAAAGATCTAGAAATATA
AACAATAATCTAGTGTTTTTACAAATCCGCTATGCGGACATAGTGCCCGCAATATCGCCA
CCCATCCGCATTCCGCTACATGGACCCCAATCCGCTACCAGCCCGCTACCCGCTATTCAA
AACCTTCTCAGGGGGACGAGAACAACAATAATTAAGTAAATAACTGCAAAGGGACTTACT
TTGTCTTGCTTCATTCTTTCATTTCTCTCCTTTGTCTTGCTCTTTATCTCTTTGGTGCTC
AGGCCAGAATGCTAAAAACAAACAGAATGTATTATTATGCAGTTATATAGAACAACTTAA
GGATGGGAATGGGCCGGCCCGCTCCGGCCTGGACCTGGTACCGTTGGGCCATCTGCTTTG
TTCAGGGACATGGAGCCAGCCCAATGGTCTAATGGTGATCGGCCTCATGCCCCACTGGGT
AACATGGTCCGACCCATTTTGAGTGACACAAAATAGGAAGTAGTAACACAACATCTTTAC
AAATAGCATCATTAGTGGTAGAATTTTTTAGCATGTTAGGATCTCTAGAGTTATTTTTTT
CAAAGAAAAACAAGGCGTACATACGGCCGTTAGCATATTTGTAACTCTAGAACAAAGGTA
ATCTTGGATCAATACTTTAAAATTTTCTACAAATACAAGGCTAATAACCCTCATAAATGC
ATATGCCACTGCAGAGGCTACTACAACTTTGGGCAACCAAATTTGGGTCGACCCGATGGG
ACTGTAGTGTCCGGCTCCCTTGGCCCATTTTTCATACGAAGCCGAGCCAGAAGACCCAAT
TGGCCTTGAAATTTTGGGTCAGACCAACGTCTCAATGGGTAACAGCGGCCCATTCCCATC
TTGAGAATAACTACCGTTGATCATCGAGCAACTGCATATTGACGGAACTAGTAATTCCTT
TTGCTCCATCCATGTAGAGTACAACTTGTCACATATATCTTAACAATTTCAGAGAAGTTA
TGTTCGTCATGTGAGGCCAACAAAATCTGTTTGATGCTCAATCAGCTTCACAAGAAAGAA
ATACAACACAACTTAACGAATATTACCAAAAGGGAGTGAAGAACGTCTTCAACAGCTCCA
GAATGATGGACTGTCTCGACATGCTGGACAAGAAGCTTCTTCACCCGTGGTTCCTCTGAA
GCTTATCAATGGTGAGTTATGTTAAATAGGGTCAAATCATCAGTGACAGGTCACATGCAA
ATAGGAGGTGGTTGGTCCATACCTTGGGCAGTGGAAGAGGGTTGGGAGATGGAGAGGCTC
GAGAAATCGAGCATGGCCTTCTTCATGGGCCTCTCATTGATCTCCAGCCCTAACAAAGCA
CAGGAAAAAAGGCTACTTTTATTTACCTAAAAAACCCTTTCTTTTTCACTTTAAAATTTG
ATGAAACAGAGAGGTATGAGGAACGGAAGGAAAGGGGAAGGCTGGAGGAGTGCTCACAGA
AAGCATCGGGGCGGGCCTGCGAGGGCTTGCGCTTGACCCGGACGACGACGGGCTTATCCC
GCACCTCGGCCGCGGAGGTGGAGGCCTCTCCGGCGGCCTCCGCTGCAGACGCCATGGCCT
GCGAACCGGGGAATAACTAGGAGCCTGGGGACCGCTGGTCCCTGTCGTCGGCGCCTCGCC
CGCACGAAGAGAGAGCCTCCCGAAGGTTTTCGCGCTGCTGGCCAGAGAGGGTTTCGGGAA
TATGGATGGAGAAGCCGCAGCGAGTCTGATGGAGGAGGGAGGAGGGAGGAGGCTGCTTCC
GGTAGGGCGTCGGACGGACGGCGGGAACAGTGGAGGAAGGGAGGAGGAGTGAGCAGAGTT
TACCTGGGGCCGGAGCGGGCAGCCGGCCAACCCTAGCTGGTCCAGCGGCGGCCCCTTTTT
TATTTTTTTCCCCGTGTTTTTAAACAGCAAGAACCAAAGAACAACGTAGCAACAACGCCA
CAGGGCGGGGTGCTGCAGCCGGCGGCTGGGGCTGGGGCGGGGCGGAACGGCGCGGGACGT
GGTTGCCGCCGGCGGCGCGGTACGGTGAGGAGGTAGGCAGCGACAGGAGCGGGGCTGGTG
GGAGCGACGGGAGCGGGGTTGGTGGGAGGCAGGATCTGGTGTGGCTGGATGTTGATTTTT
TTTTCTTTTTTTTGTCCTCACCTAAGTCTAACCCAAAAAAGCACCTCTTGGATGGGTTAG
ATGCATCTAACCAACTCTAACCCTATCTGTTCGGATTTTTAAGGGTTAGATAGCTCAAAT
GTAACTCACTCTAACTCTAACCCTAGGATCCAAACAAGGCCAGTGAAAGAAAATGACTGG
GCAACCATTGCATGCATATGTATTCCCAATACTCATTCATAGCACGGCAAATTAGTCCAG
ATAAATCAAAACAAGACCATCCTTGGTATGCGGGTCAAAAGCTCAGAGTAAATAGAATCG
AAGGAAGTACTATGCATGACGCCATCTGGTCTGCATGTTTTTTTTATCCAAACGGCCAAA
TGTCACGGTCCAACGTGTGACCCCATCTTTAAATTCCTTCTATTTGACGTCCGGCTCGAT
TCATTTTCTAGCGAAAACTTCCCCCGGTTTGTATTCAGACAAATACCGAATGGACGCCTA
CGCACACGCTCCTCGTTTGACTTGGGGCCGCGTGTCAGCCGCCCACCTACCTTCCTCCTC
TCAAATAAAAGACGAACGTGTG