Map Locations of contig_48838 (7491 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_48838

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64449 4 719 bp AK375065 Not available Available None
MLOC_64450 1 631 bp AK375065 Not available Available None





CDS Structure of MLOC_64449






CDS Structure of MLOC_64450






Contig Sequence (7491 bp)

>contig_48838 7491 assembly3_WGSMorex_rbca.fasta
AAAAATAATGTCAGGCAACAAAAATGCGTTACGAACAGATTGAGACGCTGACATTTTTCC
ATGATGTTCTATCTTCTATGATCCCCCCCCCCCCCCCCCCATCTATCATGGAACAGGAGT
TGCCTTACCTCATATAATAAGCACTTAACACAATTAAAAAATAAAGAGAAAATTTCACGA
AAAATTAAACCTGTTAGTGGAGAAAATACAGGAAAATGAACACTCAGTTAAAAATGATAA
GGCATACCTTTATTAGCATGTCTATATCACCGCCACTTTGACTAGGAGAGCCAATATTCG
GGATCTCTCCACCACTGGTTGTCTGCCCATCCCGCCCAAGAACTACATTTCTGTTGTTAA
ACATCATCCTCAATCTTCTGCTGTCAACATCACTAGATGTTGGGGAAGTCATATTTTGCT
GCGCCTGCAATGCAAGCTGCTGCTGTTGTTGTGGAGTCAGAAATTGGATCTGTTGTTGCA
ATTGGTGTTGATTCTGCATGAATGATTTCTGCTGTAGAATTCCAGACCGAAGTTGCTCAA
GTCCCTGCTGAAATAACCAAGCGAAATGCATGTCAAAATAAGGTTAAAATTTAGCATCCT
TACTAGCAGATGTCAAATCACATATTTGCTATTTGACATTATAATGGAAAAGGAATAAAA
AACTAGCAATTTGTTCCACAAATTGCTGGCAATGACATTGTCTGTGATACCACCATATTT
TAACTGTACGTAAACCACACAAAATTACTCAAGTACAGGGGCCGGAGAGAGAGAAAAGGT
CCAGGATATGATAACATAAAGGTGAGATCCGCTAGGGCGATATCAAATTGTGCAAATCAA
CACAAGAAAGAACAGACGTGGTCATAATGTACCAGGTGAACACAAAACAGATCGATGCAA
ATTTAGATGCTTCCCTTGGTCAGTAAAGTACTACAAAAAATACTATGTGAAACAAACTAA
GGCAAGCGTGTGCGTCCCATAAAATAATTGTCAGATTTCATCAATGTAGGGGAGTTCAGT
CTAAGCTCAATCAATACTGAATAGAAGGACATTAATCTCAAGTTAAGTGTACATAACTAG
GATTTAAGTTGGGGCCCTTGCGGTTTTTGACTGGTTACTGATGCAACTGGGGAAAAAATC
TCCTTTTCAATTTCAAAAAAGATGAATTAAACTCGGATACTTTATACAGAAACCCCCTAG
GCCTGAAATTTCCCGCAACAAATTTGAACCCTGAATGCAATAGTGATGAAGAAGCACAAA
ATAAGTATATGTTTAGTCGTAAATTAAACCCTTACCGTGAGTGGCCATCCTTTGAGAGTC
AAATTATTTGCAACTTGATTAGATCCTGTTAAGAATGCATCTAAATTAGCCTCACAAAAC
TGGTCAGTCAACTAAGATCAATACAAAATTGGAAATAACAATAGTTTTCTCTTTTGAAAG
AAAAAATGGAAAAGAATTGACGTGAGTAGTGGAGAATAGCAAGTTATTGGAGCAGAATAA
TAATATTACCTTGTAGACCCATGAATGACCCCTCAGGACCAGCAGCTCTAGGTGTCAAAA
TGGGATTTATCTCTGTCTTGATACTCTGCTAAATAAAAGAACACATAGATAGTTTTTTCG
TGTTTTCACAGCTGAGTATAGTTAGGGCTGACAGATAATAGATAAATCAGGAAGCCTCAA
GGGACTAACCTGGGCATGCCCTGGAAGTTGGGGACTTCTAGCCTGAATTTGTTGTATAGT
GCCTGACAAACCACCAATTGAACCATGCAAAATTTGCCTATATAGAGGAGAGGGGGGGGG
AGATGTTAAAAAATAAAGGAAAAGGTACAGAACAAAATATATCGTTCAGCCTGACTAAAA
AAGAAACAACATGTCCTTCCATATAGGGATGAAAACGGAGCGGAAACGGACAGAACTGGG
TGCTGCCACATTTGTTTTCATTCTTTTTACGGAAGCGGAAACGAGTACAGAAACCCCGGA
AACGGATATGGAAACAATTACTAGCGGGAACAAACACGGAGCGTACGGAGTGGACACGGC
AACGGAAGCAGGTGTTGACCAGAACTTAAGCACGCTTTAAGCATAACTTAATCAACTGCT
AACATGGTACAAAATAATACTATTAGGTTAGTGAACTAGCATAGTATTATAGTACTATTG
GATAACTGCGTATAGGGTCTATTTGAGTGCGTACGTGGTAGTAAAGTTGGGCCTCACATG
GGCCATTCTGCTCACCATGTCATTGGTTGTCTAGTGGTTGAGCTACAAAGCAGCCATAGG
CCCATAGTAAGAACGGAAATTCTATATTCACGGAAATGGAGAGTTCCATTTCCATGTCTG
TTCCCTTGGAAAACGCCATTCTGTTTTTGTTTCCATTTCCTCGTAGAAAGCTCTGTTTCC
GCTTCCATTTTGCAAATTTCCATTTCATATTTCCTCTCTTCCGTTGTTCCTCCGGAAAAG
CGGAAAATTTCCACTCTGTTTTCATCCCTACTTCCATAGGGCGTAGCGCGTAGGCATCTA
CACTCCATATACATTGAGAACCTTACAATTGATGCGCGTCCAGGATTATTAACATCAAAG
CTCTAAGGATAAGGCAACAATGATAGCCAGCCACACCAGCAAGTCTAAGTGTGGCATTCA
AAAGATGATTTTGTAACTTGTAACAAGAATGCTAAAATGTCATCGGCTAATGTATGCAGA
ACATTTTTTGTTAAAGCACTTCATAATTTACAAGTTCAGCAAATACCCTGAGGATTGTCC
ACTTGCAGCTGGTTTCAGCAGTGATGTTTCATTTGGATCAAGTAGTTGCCCAGCATTTTC
CCCATACCTTTGCTGAAACCAAAGTTTTAATCTCATAACGAGTAATAACAAACGAACTTT
TTCTTTTGAGGAAAACATAAATGAAAACCTTTTAAAGGAGTGAACTAAAAGAATTTTAAA
AATGAATGTAGCTATAGTGATACCTTCATGGATGCATCTTCTGAAGAGTCTCTCTGGGAA
GGCAACTTTAACCTCTCCTCATACATTTTGGTTGCCATAACATTAGCAGTACTTTGGTTT
TGTCGCATTAAGGGATTATTTCCAGAAAGTCCACTTGAAGTACCATTAAGAAGATAAGAA
TCATCTCTACGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGTTGCTGCTGATGTTGG
TGTTGCTGCTGATGATGTTGCTGCTGCTGCTGCTGTTGTGCGGCTCTTTGTAACAACATT
TGTTGCATTTGTATATGCTGTGGTTGCTGCTGCCGCTGTTGAGGTAGCTGCTGCTGCTGC
TGCTGCTGCTGTTGCTCCCGGGCTTTCATTTGCTGCGTCTGTAAAGAGAGCAGCACATTC
TAGCTGAATTAGAGCCACCAATCCAGGAGAAAAGATGCCTCAGAATCACAGCTATTGATG
CAACACAAATAAATATGATGTTCTAATGCAATTAACAAGATCAATATGCAACAGAGTGCC
CTTGACAAGCAAAAAAATGGAAAACAACAATGAACAATGTACTATTAATATGTAAAATAA
AATATATATATATGCAACGACAGTGGAATTGCCCAGCAATAGTGGATGTAACACATGTTA
CAAGAAGTTCAAGAACTAAGAACTTGTTTAGTTTGTCAGAAGTAATGGAAAGGTAAACAT
GATGGAATAACAGTATCACACTGTTAATGTAAATGGAATGGACTGGAAGAAAGTTCAATC
TTGTTTGGTTACCATGAAATGCGACGTTAATTAATGGCAAAGCTAGGTCTGTGTTCTTTA
ACCTGTAGGATGCCGCTAGGAAGAACATCCACAAATGGAAATCAAACCATCAAACAATGA
AAAGTACAAATTGGTATTTTGAATCATTTATGTCCAGCAGCAATTTACAACAATTCAATG
ATTAGAAGGGATTTCATCTGCGGAAGAAAAAAAAATAGCATGTGGGAGAAGAACAAAAAT
TGCATCAGCCCTCCCAAGAAATAGCAGATTAGAAATAAACAATCTAGAGCACATCAATCA
AAACCCAAAAGATCTCCTCAGTGACAGCCCAACCATGATTTCACGTCTCCGCCTTGCCTC
AACCAAAACTCTAGCGCCGCTAAGCACCGATTGTATGAGAGTTGAGATGGCAGTCATGGA
GAATGAATCAGGTCTGGCAGTTTGACGGAAAGGAAGAATGATGCGACCGGTTTGTGGCGA
TGGTGGCACCCTCTAGCCAGGGGAGATCATGGAGAATACATCCTGGTCTCATGGTGGGAG
ATTTTTCTTTTTTTTCTTACAAGAGCTCAGATGCTATTACAACGGATCTCAGGCAGAAAC
GGAAATCCACTAGGCCGGGAACTGATACTGCGATAACTGATTATGACCCAGTCAAAACAA
ACACCGGTGTAAATGGATCACCTCCTAAGTGCCATTTAACAGTAATAGAAAATGAATAAA
ATGAATTGTGGTAAACCAAATGGACATCACAGGCCTTGCAAATAAATTGGTTAATGACTC
ACAAACCAAACACCTCCTAAGTGTCATTTGGCAGTAACAGCAAACAAATTGTAGTTAAAC
CAAAAGGACCTCGCAGGCCCTGCAAACTAAAATTGGTGACATTTCACATCAAATTACAGA
TAACATAGGATTTTCTATTTCATTTGAAGTTTCTTCAGTAGATTCCATACAATAAGGATA
AGCAAATGCATAACTGTTTACCTCAATATATGACGCTGCAACATCTGAATGCTTCTCGTT
TGTTCTTGCTATGAATATATCCCAAAAAACTGACCACCACTCAAAAAGAAACCCACCAGG
TGCATCAATTGCTGCAAGGAAGCACAACCTAAAAAGTGAGCAATAGTTTTCACGAACAAA
ATGCTTAATAAAGGGAAAGGTTGCAAAAACCAGGACATAAGTAGCTAAACTTGAGAAGCA
CATACCAACTGGATCTGAAGAAACCTTCCCTTCTGATTGGAAGGCCTTTGCAGTTGCCTG
CAAATTTCTCTTCATAAAATAGTCGTATATGTAAACATCGAGCCTGTTTCAGCAAGCAGT
TAAATATTAGTCCTCAGGGTAAAGGTTAAATGCACGAAGACATACAATTCTTCAACTACA
ACTACAATACCATTCAAAAGACCCACAACCGGTATGGTGAATAACCAGCTTGGGCATAAA
ATATTAAGACTTCAATGGCACATTTATGCTGCATCAATGTATATTCATTTTGTTTATTCA
ACCTCTACTTTATCGCTCGCATATCATCACCTAGAGTGATCCTAAATGCCAATATTCATT
TTTCAAGCAATTCTACCTTATGCGCGACAAATGCTTAGGTTTGCTAGTGCACGTTTTCCG
TGAAACATGTGAATATCATGAAAAGCATTATTAGGTCTATTTCCCAGAAGCAGAATGAGA
TATTTCGCCTCCTTCCTCATACAAGACATGTTAAAACTGGAGCTCAAATCTAGTCATCTA
TGTGCAAGGAATCAACTTATTCGCTGGTACTTCCCTCCATACTATCTTCCTGAAGAACCT
TCATACCGTGGCCCATGAACCAAATCGAACTCCCTTGTCTTATATCCAAGATGGATAGGT
CAACTATTACTACCGGTATTTCAAATCTGATCGACAAGTTATCCTGCTGTTCCCAAATCC
CCAAATCAGTTCTCTGATATTTGGGAGATCACCACGGCAGATTATCACTGGAGTGCTATG
GCATCTAAAACACTCGAAGTCAAAACAGTAGGTCCTTCAACCGGTAAAACAAAGCTCAAA
CCAAACCAGGAAAAAAAAACTCCTGAAACCCTAGCGGCCAAACGCGCCACCACGGGTCTC
CTCTCGGCTACTTCAGTTCAAACTTCGTAGCCCCTCCCGTGATTTTCGCACAAATAATCG
CCACCCAGACTAAGCAACAACCAAATAGAACGTCGCCCAGCCAAAACATGCCGCGAATCA
ACAGAATGAACACGAAAGAAACAAAATCCTCACATCTTGTCAGCCTCCCAGTTCGTCTGC
GACATGGCCACCGCAGCTCGCCGACCGGCCTCCCTTCCCCCGAAGCGCCGCCCACGAGAA
AAGTTGGCTCTGGCTACCCCTGGGCCGCCGTGGCCACCGACGTCTGCGCAGCCGCTGGGC
GGAGGGTGGACGGGCGAGTTGCTCGAGAAGAGGAGAGGCGGAAGGGAGGAATCCGAGGCG
AAACCCTAGAAGCAGCTCGGTTGGGAGGGAAGGGAGGCGGGGCGGGGCGGGGCGGCGGCG
AGAGATGTGAGAACAGATTGGTTGCAGTTGCAGCGGCGCGAGGAGGTGTGCAGGGGAGAA
CTGGAGAGGAAGGGGAGAAGAAAAGAGAAGGTATAGAAACGCAACGGGACCCACGAATTT
CCCACCTTCTCTTCTTTATAAAAATGTACATATGTCATGTCATTTTTTGCATTTTTGTTA
TATATAATTACTCAGTATATGTTTAAGCAGATCCACGGATGCTTTGGAGGACTAGAACAC
GGCAATGCTTAAGGTCTTGTTTGATACACGAGGATCGAGAGGGTTTTCAGAGGATTAACC
CCGCGAGGTCTAGAAACCTCGACCAACTTTGGCGGCCCATTTGTTTCATGAGGTTTGGAC
AGCCCAACCACGTCGAACCCCCTTCGATCCACAGGACTTTCAACCCTCGAGGGCACCCGC
AGGGAACGAGACGGTCCAGGCAGAGCGAGAGGAGGAGTCCCGCCGCCGGATCTTCATCGC
CCGACCACCGTCAGATCGTCGACATCCTCCTCCACCGGTTCTTCCCATGGTGAATCCTCC
TCTGTCCACTTCTCCATCACCTCCCCTACAAACCCTAGGGCAATGTCCGGGGATACACCT
TCTTCCCCCTCCCATGGGGTGAAGAACTTTTCCAGCTCCATGCGTGTCCAGCAACCCAAC
CTACCTAATCTTGTATATCCATCCATTGTTTAAAAAAAGTAGTACTGATCTTCGATCACC
ATGCCTCTTATTTCATGAAGAAGGGGGAGGAGACCATCTGCACATGTGTGTCGTGCGCTG
GCATTGGTGAGATTTCTTGGTCTTCAATTCATTACTCAGTTTTGTTATTATCGTTAGGGA
TAGCACCGGCGAAAGGAAGGGGAGATAGCAATGCTCCCTATCTTGCTAGATTGCTAGAAG
TTAATGCTTTAGCTTGAGTTAAGGCTTGTGATTTGCGACCATGTGTGATGTTGCTGTGAT
GAATTCTTACTTCTAGAAGATAATTTGCCGTATAACCTCGACCAGCAGCAAAATTATTAC
TGGTGGAAGCCAGATGTGGTTATCAAAATATGAACCTCCATCTCTGTTTTTAAGTTGCAC
AAGCAATACTATAGATATTTCTGATATGGAGGACATTTTCCTGTAAATTGAGATAAAAGA
GAAGGCTCTGAGCCTCCGGTTCTTTACCCCAAAACTTGCATCTGCTAATATCCCGGGCAA
CTAAGCATGATCATGGACATTCTCTATACTGAAGATGTAGCAGGGCACGGA