Map Locations of contig_48776 (8937 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_48776

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64403 2 1144 bp AK373995 Not available Available None
MLOC_64404 1 1465 bp None Available Available None





CDS Structure of MLOC_64403






CDS Structure of MLOC_64404






Contig Sequence (8937 bp)

>contig_48776 8937 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGTGCATGTATTGTCAATTTAATACAAACAGATGGACCATTGCG
ACCCCTAAATAGTAACTATGAAGTATTCTTATCATACTATTTTGTGATTGTTTTTTTCCC
CAGGGCCATGAAGAATATCTTACTGAAATGAAACTACCGGATAGTTGCCCATGGAATCGG
ATCAAAGGCCTTAAAGCTGTAGAGCTTTGCAAAATTCAGGGTCTTTGCTATACAACTTAT
AAAGGGTCTGGTGACAGCTGCTGTAAATTAACACTTCAATTCATTGACAGCACTTCAAGC
GGATTTAACAGAGAGTTTGTAATCACATTGCCTGAGCTGGTTGGCTTCCCCGATTTTCTT
GTGGAAAGAACACGGTTTGAAGCTGCTGTTGCGCAGAACTGGACTATCCGAGATAAGTGC
AAAGTTTGGTGGGCTGATGGTGGTGCAGAGGGGGGAGGAAGTTGGTGGGAGGGACGTGTG
TTGGCAATAAGACCTAAGTCACCTGATTTTCCTGAGAGTCCATGGGAAAAATATGCCATA
CAATACAAGACTGACGGTTCAGAACATTTACATAGCCCCTGGGAGCTCTATGACATTGAT
ACCCCATTGGTTCCATGGAAACATCCACATATTGATTCCAGTGTCAGGAATAAATTGTTA
TCAGCAATGACCACTTTACAGAACAAGTCTCGCAGAAACCAGGTAAAGTTGAACTACTAT
TCATTTTTGCACTCTTTAATTACTCTTGTTGTTGTTGACTCTGCATGGTATTTCTTTATG
GATTTTCAGGATTGCTATGGTGTCCTGAAGTTGGATACTGTTGCAGTAAAATCAGAGTTC
ATAAACAGGTAACTTGTGTACAAAACTACAAGTGCATTGAGTTCTGATGAATTTTGCACT
TTTTTTTATTTAGCAACACAAGTGAGAATAATGACTAGTGTGAAATAATCATCATTAGGT
ATAAAACTGAAGGAGAACAGATTTATCATATACTACATATTATAACAACAACAGCAAAGC
CTTTCGATCCCAAACAAGCTGGGGCAGGCTAGAGTTGAAACCCATAAGATATCGAAACCA
AGTCATCGTTCTGGCACATGGATAGCTTAACTTTCATGCTCTCCTGTCCATGGCTAAATC
TTTGGTGATATTCCAGTCCTTCAAGTCTCTCTTTACGGAGTCCTTCCATGTCAAGTTTGG
TCTACCCCGACCTCTCTTGACATTATCAGCGCGCCTTAATCGTCCTTATGCACCGATACT
TCTGGAGGGGTGCGCTGAACATGTCCAAACCATCTTAAATAATGTTGGACAAGCTTCTCT
TCAATCGGCGCCACCCCAACACTATGACGTATATCATTACTCTGGACCCGGTCCTTTCTT
GTGTGGCCGCGCATCATCTCAGCATGCGGCCATGCGCATCTCTGCTACACCTAGCTGTTG
AACATGTCGCCTTTTAGTTGCCCAACATTCAGTGTCACCCAACACAGCAGGTCGAATCGC
TGTTCTGTAGAACCTCTCTTTTGTCTTTTGCGGAACTCTCTTATCACAGAGAATGTAACA
AGGTTGGCGCAACTTCATCCATTCAGTTTTGATTCGATGGGTCACATCTTCGTCAATATC
ATCATCCTTCTGCAGCATTGAGCCTAAATACCAAAGGTGTCCTTCTAAAGTACCGCCTGC
TCATCAAGGCTTAACTTCCCTCTCCTCGTGCCCAGTAGCACTGAAACCACACCTCCTGTA
CTTAGTCTTAGTTCTACTAAGCCTAAAACCTTCCGATTCTAAAGTCTGTCTCCACAACTC
CAGCTTTTTATTAACCCTGTCCAACTATCATCGACTAGCACCACATGATACGCAAAGAGA
AGATAAGGGCTCATCCCATCATGGGATATCTCCTTGTATATCCCTGGTGACTTCATCCAT
CACCAAAGCAAAAAGACAAGGGTTCAAAGCTAACCCTTGGTGCAGTCCTATTTTAATTGG
AAAGTCATCGCCATCACTTGTTTGAACACTTNNNNNAACATTATCGTACATGTCCTTGAT
GAAGAGGTACTTTGTTTGGACTTTGTGTTTCTCCTTTTTAGTGTTCGAACAAGTGTTTCT
CTAGGGCCCACAACATGACATTCCACGGTACCTTATCATAGGCCCTCTCCAAGTCAATGA
ACACCATATGCAGGTCCTTCATAAGTTGTCGTACCAAGAAAAGAAAATGGCTCTTGTGGT
CGTCCTCCTAGGCATAAAACCAAACTGATTTTTGGCCATGCTTGTCATCCTTCTTAAGCG
GTGCTCAATGACTCTCCTATAGCTTCGTCGTATGACTCATCAGTTTAATAATTTCACGGT
AGCTAGTACAACTTTGAACATCCCCCTTTTCTTTTTAAGGTTGGTACTAATATACTCCGC
CTCCAGTCTTCAGGCATCTTGTTTGACCAAAAAATGAGGTTGAAAAGTTAAGTTTATGGA
ACACTAAGTGTAGTTTTTTTAATGATTATTTTAGATGTTGCTTTTTAGGAAATTTACGCG
AACACTTTTACAAAACTACCTTCTATGGTTGGCATATCTCATAGCGTGCATAAAATTAGA
TTTTGCTAATTAACATTCTGTTATCAAAGTAAAATAAATGCCGTTTTGACATGAGAAGAT
GCTGCCTGTGCATGTACAAGGCCCCCATTTTCCATTTCAATTATGAGGCATAGTTGTTAG
AATACCATAAATGTTTCTTTAGACAAAATTTAACCAATTCATACACTTCTTTTTTATGTC
GTGTGTTGCATTAAATTGTTTTGTTATTTACTCCTTTCCGTCCATATGTGCTCATAGGAT
GAGTATCTCGAATATCAAAAGGCCCTGTACTAGTATAAATAAATGTTTTATTTCACAGTG
AGCTTTGATAGTACCTGTCCTTGCAAAATACTTCCTCCGTACTATAATATATATATGACG
TTTTAGCAGTTCAGTTGAACTGCTAAAACGTCATATATTATAGTACAGAGGGAGTACTAC
AGAAGTAGCTTTTATTGAGACTTGGTGCCTCCTTGCCTGAGCATTGTTGGTTTGGAAAAT
TATTTCCTATGGAGTATATATGGTGCTTTTATCGATGAATGATGAAATAACATCCATCTA
AAGATAGATATTTTTGTGTGCAACAATTGTAGGTTTCCTGTCCAGTTTTCCATGGAGGTA
ATCAGGACAAGACTGGAAAATGGTTACTACAGAACCGTGGAGGCTCTCCAACATGATGCC
ATGGTAATGCTTGCCAATGCTGAGAGTTACTTTTCAAAGAGCGCCGACATGAGCAATAAG
CTTCTCATGCTATCCGAGTGGGTCGATGATCACATCCTATCACTTTAGGGGAAGGTGGTA
TTCTTCCTTCTTCTTGAGGAGAATTAGCCAGCCTCAGCGAATGAGAAGGTTCTTCAGACC
GAAAGCATAGTCTTGTTAGAGGAATGGGCCAAAGTAAAGTAGTTGGCTGGTTGGGAGGAG
ATGCAAATTGATCTTTACTAACAAGTGTCCCCATAGTTCTAAAAGAAAAGAAAAATTAGA
AAGAGAAGAGATGCTGGCGTTGTGAAATCTGCTAGAAAAATGCTCTACCAGATTATTGGA
TTTGTACAGTCGTCAGTCAATAAAGAACAAGGCAAATAATCGATCCATTGGATAGAATAT
TCACAAGTTGTCTATTGCTTGTCTTGGGTGCCTCTTGTACTGTAATGCTTTTTCTTTACC
AGTTTTCATCTTGGGCAGCCTCAGTGCGGAGATGTGTCGTTAGCTTAGCCACGTCCATCT
ATTGCGCAAGGGGCTCAATTGCTCGGGCTATGGGCGTGGACGTCGGAAGATATCATGTTT
CAAAAACTTAATTTTTGCTGTGAAGGCTCACAAGACCTATGTATACAATCCCTAAAAAAT
TCAGATCGAAAATCAAAATATACATGAAGGAACAAAAAAATATATATCCACATATGAACA
GTGTCATGTTTGCATTTGTCTTTTTTGTGACACTATTCATGCTGGATTTGTCTTTTTCAT
TTCTCAATGTGTATTTCGAATTTGAATATTATTTTTTCCAGGGATAGTAGATATTTGTGG
TGTGAACATTCAGGATTTTTTGTAACATGTAAATTTGAATTTCGTGACATGGTATCACTG
TATCAATAGGACATGCGAATTTGGAGATGTAAAATACGAGATGTAAAATTTACATCTCCA
AAAAGTGCTTTTTACATCTTCAAAAAAAAGAGACAACTTCAACAGAAGATGTATATTGGA
GATGTAAAACAACAACTCCAACAGAAGACATATATTGGAGATGTAAAACAACAACTCCAA
CAAAAGATGTAGATTGGCGGAGGGGTGGGGATCAAGCGGGAGGTGGAGAGAGGTCGAAGG
AGAGTCAGAGCAGCAACAACAGAGGCGGGTTGAGGCCAGAGGAGGGTCGAGGCGGTGGCG
GCGGAGATGGAGCGTGGCCGGACGCGAGTCAGGGCGACATGGGAGGCGGATGTGGGAAAT
GGCAGTAGGGATCCAGGTGGTAGTGGGGATTGAGGCGGCGGCGGGAGGTGGAGCGAGTCC
AAAGGAGAGTTGGTGAGGCGGGGACGAAGGGGAGCGAGACCGAAGGAGAGTTGGGGCGGG
AACGGAGGAGGTGGAGTGAGGCCGGAGGAGAGTTGAGGCGACAACACGGGATACGGAGTG
AGGCGGCCGCAACAGGGAGTTGGGGAGGGGGTGGCAAAGCGAGGGAGGCGGTAGTGGGGA
TCGAGGCGACAACGGGAGGCGGAACGACGATGGGTGAGAGGAGTCATGATGACGGCATAG
GTGCGGCGGCGGGGGCGATGAAGGTGCTGGAGGTGGCACATGACGATAGCAGAGGGGTCG
GAGGTGGCACAAACAACGGTGGAAGGGCCGGAGGTGGCAAGGGACGACGGCTGTGTGGCA
TGGTGGCTGCAGGGCAGCGACAATAGTGCAATCGCTGACCGGGAGGAAGAGGAATGGTGG
GGGATGGATGAAAAGAAAGGCAGTTGGTGATTGGCGCGCGGCCTCTAGTTTTACATCTTG
TGTAGGTGGGGATGCAAATTTGCACTGTGGGTCTTGTAGTTTACATCTCTCGAAGGCGGA
TATGTTTTTTTGCATCTATATATCATTTGTTGGAGAGGTGTTTTTAAGCCTTGAAGATGC
AAACAGTAGTTATTTTTGCATATACATCTTCTATTGGAGATGCTCTAAGACCCTTCTTAC
TAACAACAAAGGACCCATTCAATAATGTGTACCTAAAACCAATCATTGATCTTATGTAGG
AGTTTGCTTATGGAGGAGGTTCATGGTTGCTCGATAGTGAAGCAACAAATCATATGACTG
GAAGCAGGGACTTTCTGGTGGACGTTCAACCTAGCTCATCTATGGCCTCTCATGTCCAAT
TTTGTGATGCTACAACATCAAAGGTATTGGATCTTGTCAAGGTGGTGATCTCTCCGGATT
TAACCATTGAGAAAGTCATGCTTGCCGAGAACCTTGCATACAATCTACTTTCTGTTTGTC
AACTTGCACTCATGGGCTTTTCCACTTTCTTTGGTATCAATACCGTGGACCTTCTGTGGG
AAAGACTCTTAAAGTAGCCTATGTTGGATATGTTGAGAATGGTCTCTATGTGGTTAACTT
CTGTGGGAGGCCCACTAAGACCGCAACATGTCTAATGGCTAAAGTTGATGTGGGATAGCT
TTGGCATCACCGTTTGTCCCATGTCAATATGAGATCTTTGCAAAGTCTCCTCAATGGGAG
CCATATTCGTGGACTAACAAATGTTAGGCTTGCCAAAGATCGTGTTTGCAGTGTTTGCAT
CGAATGAAAGCTACATGAGAAGCCTCATCGCTCTATGAGTATTATTTATTTGAAGATACC
CTTGGAGATCCCTCATCACATGGATCTTTTTGATCCTCCATCTTCTGATAGTCTTGAAGG
AAGAAAATATGCTTGGTGATTATGGATGACTATTCAAGATATACATCGACATACTTCTTC
AAGAGGAAAAGCGAGTGTCGGTCCAGTGAAACCAGGGTACCACAGCCCATCTACCGTCGT
ACCAGTCGACTAAGCGAAGTAGACCCAGCCTAGCAAACAACCCACTGCAGAACTCCAAAT
ACCACTCTGCGAGGCTCCGGGCTCCGCGAGGCTCTGTCTCTGTGAGAGGGACCCACATAA
CACTTGTACACAAGTTGTGAGCGGTCTCGCGAGGTCTCCCCTGTGAGGCTGGCTCCCACG
AAGTCCTCCGCCTGGAGGGGTCATGTAGTGCCGATGAGATAATCACGTGCCCGTCACATG
GGCGACATGGCAGGGCGACACAGGCCGCAAGGACGGAGCCATCACACGCAGGTAGAGAAT
CTTTCCCATTTGTGATAAAAGGGGAGCGAGCAGCTATCCTCCCCGAAGGTGAGTCCCAAG
GGTTACCTCTTTGGTGCAAGGAGACCAGCGTGACACCGATCGTCGGGACAGACGTCATCG
GCGAGCCCACAAGCACGTCATGGACGACGCCTTTGCAGAGTGAAGACCAACTTTCTCAGG
GAATACTGGGCGCTTGTCTCCCTTCGAATTGTCGCCCTGTGGTTGCCCTTTTCCCGCCAA
TGTTTTGGAAAAAGAGGCTCGAGGCAAGATAGGAGGGACAAGCTACCACCATACAGAAGG
AGTGGCATTTTTTTGAGCTCTCGTTCTAGAGGAGAGAGTTCTTCCTCTTCCCCAAGAACC
TTGTAGCCCTTGTGAAAACGAAAGAGCAATACACCAAGCAGGAGTAGGGTTTTACACCGC
AAGGTGGCCCAAACCTGGGTAAATCCGTGTGTCTTTCTCATGTTCTGCGTGTGTGGCTTC
ACCATGATTGAGGAGTAGATTGCGCTCACCTCCCCAAAGTTCGAACCAGGTTCTTGAGAG
GATTCCCGCAGACACAAAACCGATCTCTGACATTTGGCATGCCAGGGAGGGGAGATGCTT
GCTCGTCTGCTTCTTCGACCTAGCTCGACATCGACATGGCGGAGGCACATCATGAAAGGT
ATGCTCATAGGGCTGAGATGGCTCGCACACAACCGTCATCAACAACACCCGTCGCATGCG
CGCTCCCTCCGCCATCGAGCCCACGGCGGGACACGCACGTGCTTTCTATGCCCAACCATC
TATGCAGGCGAACCCTTTGCCTGTGCACACTACCGCAGAGTCTTCTCACGATTGCCGCGA
CAAGCCGGCTCTGCAGGCCGCGCTCCTCATGGCGCGCGAGCTGCTCCACTACAGTCCCAT
CGGAGTCGGCTATGATGCATGGCTCGCATGCATCACCGAGCTGGTCAACACCGTTGGAGG
CGCCTCGGCTCTCACCCACTCCTTGCCTCCTCCTGCACCGGAGGGCGCAAGGGCGGGGCA
CAGTGTCCCTCCTTGGCCTCCTCCGTAGGGCGAGGCCGATGGGCGGGGCCACGGTGCACG
CGCACATGAGCCATCCCATGGAGCGTCTTCCCCACCTCAAGCGAACCCAAGCTGCCAGAT
CATTCAACGTGCGGAGCCCGACGTGCGTGTGCTCCTAGAGAGGCAACGCAAGCGCCAACA
TCACACTCTCAAAGAGGTCAAAACCGTCGGGGGCCACAACCGCGCCACTCTCACCGGTGG
CGCTCCTTCTTGCAGCAGGCGTGACCGCGAAGAAGTTCCCAAGAATACGTTCTATGCCTG
CCACAACGTGAGCTCCCACAACACCGAAGACTGCCATGAGCTCAGGTTGCTTTGCGAGCG
GGGGCAGAGTCTCTGCCCCAACCGCAACGATCGCGGCACAGGTCGCGGCGGTGTCCGCAC
TACTATCCGCTGGGGAGACCACAACAACAACAACAATGGTAACAATCGCCAGGGTTGGCG
GGACCCACCATAGCGTCCCAATCCTCAAGCTAACAACACTCTTCCGTGCCCCAACACCAA
CAACCGCAACATACCCGATGAGGATGCTGGGGGCTATTAGGAGCCTCATGGGTTGGCGTG
CATCCTGGGCGGATCTCACGCTCCAACGTCCAACAACCACTTCAAGAAGTTCTCCCACGA
GGTGAATGTTGTCCTCCTAGGACCCGAGGTCTCAGGGTCCCTCAAGTGGTCATAGTATGC
AATCACCTTTGATTCCAAGGACCACTCCAAGTCCACGTGGACTATGGGCACCATGTCCAT
GCTATGCACTACCACCATCAACAGCGTCAGTGTCACCAAGACACTCATCAACGACAGTGC
ATGACTCAACGTGCTCTCCTTTGATACCTTTGAGAAGCTTTGCGCTCGCCAAGTTCATGG
CCGTGACCCACCATGCCTACAACACCGTCAAGATGCCAGGCCGTGGCGGTGTCATCACCA
TCCACTGCGATGAGAAGGAGGTTGTGCGATCCATCGAGCATGCCTATAAAGATGTTGCCA
CCGCATACCCCGCGGTCGAGGATGATCTCGAGCCTCCCGAGGCCGCACCCGAGAAGAAGA
AATCATTGTTCTCTCAAGAGCAGGCCGAGACAAAGAAAGTGTCGCTGGACGACAATGGCT
CCGGGTCCACCGTCACCATCGGTAACGACCTCTCTTTCAAATAGGAAGGTGAGCCCGTCG
CCTTCCTTTGGGAAAAAGCTGATATGTTTGCATGGACAGCATCAGACATGCCCGGTGTAC
CGACGGAGGTGATCGAGCACCACCTAGCCGTGTGTCCCAATGCACGGTCTGTGAAACAAA
AGGCACGACACAAGGCGCCAGAGAAGCAGAAATTTATCGTTCAAGTGTCGACTTATGAAA
AAGACCTATTACATGGCTCTCAGGCCAAATCGATAGGTTTATTCTGTTGGCGCCTTAGGA
TCATTTTGCTGCGAGCTTTGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC
TTGGCCAGAGCTGCGAAGTCATCTTNNTCAGTCAGGATTGATGCCAGGTCTGCCTCC