morexGenes - Barley RNA-seq Database

Contig contig_48773
Source Contig contig_48773
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48773 (7298 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_48773

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64401	4	2592 bp	MLOC_64401.2	Available	Available	LOC_Os07g46700.3, FRAME:-2, EVALUE:9e-153, 13107.m04934 protein zinc finger, RING-type, putative, expressed
CDS Structure of MLOC_64401

Contig Sequence (7298 bp)

>contig_48773 7298 assembly3_WGSMorex_rbca.fasta
GACACTTGGACCCTAGTGACAAGCATTAAGCATAGCAAAGTTGTAGCAACATCAATATCA
GAACATAATTGATACTAGGGATCAAGCTCTATCAACTTAACTCGATTACATGATTAATAT
CATCCAATCTCATCATCGTTCAACAAGCCTACAAAGGAATTACTCATGCCCGGTGGTGAG
CATCATGGCTTTGTTGACGGAGAAGGGTTGGTGATGATGACGACGATGAATCCCCATCTC
CGGAGCCCCAAACGGACTCCAGATCAGCCCTCCCGAGGAAGAAGGGGAGGTGACGGCGGC
CCCATCTCATAAAACACGATAAAAACTTCTCTCTGATCTTTTTCCTCCTAAGATGTGAAT
TTATAGGACCAGAATTAGGGTTGGGGGAGCCACTGGCCCCCACAAGCTAACAAAGCGTGT
CCTATTGTCTTGTGGACCATAGACAGCCCCCCTCCGATGGTTCTTTGGTCCATAATTCAT
TATATATTCCAGAAATAATTCATAAAATGTTTCGTCCGATTCCGAGAACTTTTATTTCTG
TACAAAAATTACATCATGGTAGTTCTTCTGAAAACAACATTAGTCTTGGGTTATTTTCAT
TCAAATCATACAAATTAGAGTCCAAAACAAGAACAACAGTGTTTGGAAAAGTAGATATGT
TTGAGACATATCATTGGCCAAGCGCGAGCATCTCCAATAGAAGATGCAAATTTATAGATG
TAAAAATAGAAGATGTAAAATTTACATCTTTAAAAAGTGTTCTTTACATCGTCAAAAAAG
GCCAACTCCAAGAGATGATGCAAAACAAAGACGTAAAAGTGCAACTCCAACAGGTGATGC
GAAATGGAGATGTAAGTTTTAGAAACTTCAAGTACTAGTTCATTTCAAATATCATTCAAA
GATACCAACTTCAACTACTACTTCATTTCGATCATAATTAAACATAGTTCTAATTAAAAC
TTAATTACACATAATTTAAAGGAATACTACTAGTTCATACTAATACATCCATGGAACTAC
TACTTCAATGACTACTACTAGTTCAAACGCCTATTACTCGAAGATGAACTACCCCTTGTC
GGAACTCTTGAACTTGTCCTAGAACTCGACCTTGCTCAGGTCGTCGCACTCCTCATACTT
CTCCTTCAAGTCGCTCAGTCCTCCTCCAAGGACTCGATGGGGATCACCGTCGAGGGATCA
GCCTCATCCTCTTTCTTCTTCTGCTCAACATCTCGCTTCAAGAAGAACTCCTTCTCGGCC
TTAACATACTCTGAATGCTCCCGTGTGAACCTCGCCATCGCTGTCTGGTCACTATCGCCG
GGACTAACGACAATGGTGGGCCTCTTCTTCGTCTTGATCTCCACCATACGAATGTCCCCC
CACACGAGCATCTCTGCATCCACCCAGGTATCAATCTACGGGAAGTTGGGCTCCTTCTTT
GGCCTCCCAGTACACCACACACCGCCACGTCATAGGCACGCGCGGCCATGTCGACGGTGG
AGTAAGTGCCGAGGCAAAAGCGGTGACCAACGTCGGTGAACTTCACCCCGAAATTGCTGA
AGGGCTTCGCCCTCACGCCGAAGAAGCTGATCTTCCTCTTCGGTGTCTTCCTCGACGACA
TGGCGACGACGGAACGGGGCGGGGCGGCGTTGCGAACGACGGTGCGGGGCTATAGGAAGG
GTTGTGGGTGATGATGCGGGGCTACACGCGGGGCTACAGAGGCGACAGGGCGGTGGATTC
GAGCGGCGGTGTGGCGACAACAGTGGATTCGAGCGGTGGCAATGCGAGGAACCGACGGCG
GGGGTGCCGGAAGGGGCGAATCTGGCGTGGGGCATCGTCAGCAGGGTGCGGCGGGCTTGC
GAGCGGGCGACGGCGATGCAGCAGGGCAGAGGAAGGAATAATAGGGGTCGAGGAAGAAAA
TGGAACGACTGTTGGCGGTCGGTTGAGTTTTTTGCATCTCGAGTGTGTGGAGATGCAAAT
TTGCGAAACGGGAGGTTGTAGTTTACATCTTCGAAAGGCGGAGATGTTTTTTTTCATCTA
TACATTAGCTTTTTTTCATCTGTACATTAGCTGTTGGAGAGACGTTTTTGGGACTCAAAG
ATATAAAAATTAGATATTTTTGCATCTACATCTTTTATTGAAGATGCTCTGAACAGATGG
CGCTGGATGATTTCCGTCGGAAAGCAGTTTGGGGCTCGGCCCTCGCGTGTAAAACATGAC
GAGAAATGAAGCCATGAAGGACGGGCCGTGGAATGAATGAGACATCCACCTCGGGCTACT
GTACCAAATCTGACACTCCAGCGACCTTTTGCTGCTCGACTGATTCCATTCATTCACCAC
GAAAGCGAAGCATCACAACTTCATGCCTACCCAAACCACGTACTGATATGCAATGAATAC
AGCTTGGCTCCGTCTATCGCGCTGAAAAACCTCCCAGGCTCAAATCGAATGAACTTCCGT
GCCAAATTCATGCAGACAGGATCCAAGTAGAAACATCAAACAGAACATCTTCTTCCAGAA
TGGCATTCCTCCAAATAAGCATCGGCGAAATGCCTAGAACCAATGATCCATTACTTACAT
CCCCGCAAAAGAAAAAGAAAAAAAAAAAAAAAAAAAGATTCATTCCTTACATGCCCAAGG
CGTCAGACACCCCTAACACATCACACAGGCCGTGTGGATACAACTGACAATAATTTACAT
AGATATATTAACTTACATTACATAACATACGGAGCCTCCCCGGCGAGCTGCTCGGAGCGT
TCATAAGCTCGCAGCAACCGGCACCCGGGGCTCCACAAATGTCTACAGCACTAGCACTAG
CAGCACCCAACTGATGAACAACCGGCAATGTCTACAGCACTAGCAGCACCCCACTGATGA
ACAATCGGTGTAGCACAGAGCACAAGGTCACTTTACGTGGGAATCGTATACCTCAAAAAC
AGATTCAGGGATCACTGTGGGCAACTTATCTATGTACATGAAGAGACGCCTCAGGTTCTC
TCTTCGGACCGTCGCCATGTCGACTATGTCCCTGTTATCCGTGTATATCCAGAGGTCGGC
GGAGTTGACCCTCTTGAGGCTGTCGCGGCAGAATGGACAGGACTGGGATCTTGATCTCCT
GCAGGGAGGCCACGCTTAGAGCAATAGATGGGTCTATTTAAAGAAACTGAAAGGATAATG
TAGAAAGTGAAAGTAATTGTCAGACTCACGCCAATAGACAAACTTTGTGTGAGGGCCATT
GACATGTTAAGAACAAAATACAATTAAGTGCATTTCTTTTTAAAGTTTATACATATTTCG
ATTGAATGAATGCTCAAGCTACTACTGTCTTAACATAGCAAAAGAGGTGTAACTAATCCT
GAATAAATTTTTCATTATTTCAGAAATGATCTCATAGCAAATCTCATCATTTTGCACGCC
ACTTGAATTCCTCAAGGACTGGTGTTGCTTCGGACTCCGGAAAAGAAAATCTAAATCCAA
ATGCAAGCAGGGTATGACAGGACACAATCTAAGCAAACCAGGTAAGAGCTGTATCCAGTA
TCCTTTGGACTGGGATAAGAGAAATCTATCTTAGATGGACTTGGTCTCCTATATTTTCTG
ACTCATTATCCAACCTTTGGCTGTCCCGAGCTTTACCCAAACCAGCATGCCTTTTCTCCA
ATGAGGTTAAATTAATCATGCAATACAAATCTGCAAGATTCATTCCTGAACTTCTTCTTG
CAAGGGGATGAACATAAAAGATCAGGAACGCCAATTTCTGTACAAAGTTGATTTACATTG
TCTCAGAAAGATCCCATGTTCAATTAGTTCCAGTTTCTACTTTATATACCAAATTAATCA
TACAGGGCAGTAATTAGAAGGAGCATGAAAGCCAGCTCAAAGCAAATATCTATTCCTTCT
AAACAAGGCAAATATACAATGAGGTGACTTTAAATAGGGTTGGGTTCCATTACAATTAGA
TGACCACCTAGCCTCCTATGAAGACCAAAGAGCAAACTTATAAAAGACGAGCTAGTAGCA
TGATAACACCATAGTCAAGCTTACGACGGCAGTTTGCATGCTAAAATATTCGTTAGCCCT
TGGTATCATGTTTTAGGATCAATATTCCATGAATATAAATGATTTCAAGCAAGCACAGAA
GGGCCCAATTATTTCCTAGTAGGTAGTCAGGTGACCATGCTGATGGTTGTTTTTCAGTTT
GATTGTAAAATTACAAGTTGACAATGCAACCAGCTTACATATGAATCCTGAGGACCTATT
AATTCATCTTGACCATGCAAAAGTATTTTATTGTCACAAGGACAAAAGTCAAATGTTCTG
TGATAATGAATTTTGCTCGACAATACAGAGAGAAGAGAGAAGATAGGTACCAGTCACGAT
AGCATTTAATGCACATAGCATGGCTACAAGTTGGAAGGACAACTTTGTTGTTTATTTCCA
TACATATGCCACACTCTTCCTCTATATTATCATCAATCTCTGAGATCACCCTTTTGTGAT
CCTCCTCTCGTCTTCTATACCTCTCTATACAAATCGCTTTTTGTTTCCTGTCCTCCAGCT
CATTAATTCCTTCATGCAATTGCGCCAGAGAAGGGTAAATTACAGCTGGCAAAATAAAGA
AAACAAATACCTAATGAACAAACCAGTTAAAGAAAATGAATGCGTGAAACAGTTGCACAA
AACAGTTACACTATACCATAGAATTCCCTGATGCTCGCTTTCCTTTCATGAGTGGACATG
GTGGTTGTCCCATCAGCATAAACCTGCAGATTTAAGAATATAATAATGTAAATCATGGCT
GCAATCCAACAACAAAAAGAATAGCAGAAAGGAACCTGGATAGGATACTAGTGTTATCAA
CCTTGTAAATGAGAATTCTCAACAGCCCAAGAGCACCAGCAAGGTTGCAGTCTGTCCACT
GCACAAGAAAAAGGAAAAGGTGTGCAGCTGGACAGTATGACATCCTCATCTGAAGACAGG
CACCATCATATTCCCTTCGAAATTCAGAAGCACTGCAGTTTTTACCAAACAAAATACTGA
GCAATGTGTTCTTGATGCAGAAGAGAATAGATCAACTAAAATGAGGTCCCAGTTTACACA
AAATTTCCCTAGTCCATTCATGACGTTCCGTGGTCTTACAGATAAGGCAAGGCTATATGC
TGTAATCTTAATCATAATCCACACAAGAAACCAGGATAATCATGATATCCCTACAACTAT
GAAACAAGACCACTCCAGAACTTCATTGGCCAGCTTTATCAGAGAATAGCAAGCCAGAAT
AGAATGTATCCGAATTAAGGAAGCAAACGTGTTGTTAATGGCCAGCAATGACATAAAGCC
ATAGAATATTCCTGTGGTTAACCGTGTTAACACATGTGTGTGTACCAGGAAGGCTATAAA
AAAAATGGCGCTGCTCCTGTCGGTTTCCTCAAATAAACTTCCTGGCATGCTGCTCTCCAT
AGTCCATATAGCAAAATAATAATTGTTCAAGACTTACATTCTAAAATCATTTCAGTGCCA
TCATATGAGGTGTCAAAACATGGTTGAAGTTAGAAGAGAACTGGCTAAGGATATGATTCC
ATACCTGGGCTGTAACTACAATTAGCAGTCCCTACACTCAATATTCAGAAAATCATTGGA
GGTCAATCTTTTTAAGATTACAACTAAATTCTGAAAACTACGCGTTGTATACAGGTGCCT
GAGTAAGGCAATAGTAGCCTCTTTAACCAGTTGGAGGTCCAGAGGAATCGAAAGCATTCT
TCCTGACCAGGTTTTAAAGCTTGAGGGAACCTATAATAGTGAATTCATCCAGAGCAACTG
ATGCCCATGTGGATAGTAAACAAAGCATGATGCGTAGCTAGTTGGCAAAATGATATTGTG
GACAACTTCCATGAAAAAAAATCCATGCGATAATGATGAAGAAGCCACCACCACATTGTC
ACTCGAGAAGAATTGCATCGTACACCAACAAGAGATATTTCATGACGAGAGCTCAGAAAG
TGCTGTTCCTGTATTCTACAAGTGCTTCAAGGCCAATGATGACGGCTTCGGTCAGAAGGC
AGTACATTGGTCAGACACGTGTCAATGAAAGAAGCTGCGCTGCCAGTCCTTGATAGCTCA
CCGCAATCTAAGTATAGTTAACTTTTTATATGCCATCAACCAAAACTGGAGCAGCAAATC
TGGAGTGTCAATCCTCAATACGGGAAGCATACACTGATTAGCAGAAAAATTAAGCAACCA
AGGTGTGTACGGCAGACGATATAATCTGTAAACAAGACGGAGACCGCAACGGATTAATCG
CTGCGTGCCATCACATTTGCGCGGGCATGGCAGCAGCACGAGCAGAACAGGCCACCCCAC
TCCGGACCTGGATCGACAAGAGAGGCTTCTGGTACCAGCGCAACACCCCCACCCAGCTCA
AATCAGAGGTCAATCAAACAACAGCAGCAAGCTGCACACGGGGAGCAGGAGGGAGGGAAG
CGATGAGCTCACATCGAGTTGGCGTGCTGGATGTCGGCCTCGAGCAGCTTGAGCGAGTCC
CTGAACGACCTGCCCATGGGTAGGAGGAGGAGCGGCACCAGTGCTACTACTCCAGCGCGG
CGCCGCCGCGACCATCCAAAAAATCCCCAACCCCTCCGGCGCCAAGCCACCAACCGCTAT
CCCCTTCCGCTCCGCGCCACCAATCCGGCACCCAAACCCTAGTAGCCGCTCGATCCGCTG
GGTCGCTCCCCCGAGGTCTCGGTCCAGCTCCGGCGGCGGGTGAGCTCGGCGAGCGGCGGT
GGGGAGTGCGGCGGGGAGGCCGGGCGGGTTTAAAGCTCACGCGGTCGCGCCCCCCGTCGC
TTTCGGCGCCCCCGGGTGCCTTGCGTGCACGGGAGGGAGGCGGGGTGCGGCGACGGTGGT
GGCACGCTGACGGGTGGGGGCAAGGGCCGGGCCGGCCTGGCCTGTCAGGGGGCGTGGGTA
CGTGGGGGCGGGGACGGCCGGGGACGCGGGCTCGGCCAGGAGGGTTGACACGTACGTACG
TCTCTGGAAGGTGCGGGTGCCCCGGCTGAAGTTGCACAGCCCGTGACACAGCGGGGGCAC
ACGTACAGCGGCACCGAGCCGTCAGTGTTTTTGGTCGACTGGTTGTGTTTCGTTTGGTGC
CGGTGAAGAAGAGACGGGTCAGAGATTTATATTAAGGCCTTGTTCGGTTAATCCCTATAA
AAAGGGGATTGAGAAGGATTGGAAGGGATTTAGTTGGAATTTGATTTAGTTGGGATTGAG
AAGGATTGGAAGGTGTGGGTAACACTACAAATACTACT