morexGenes - Barley RNA-seq Database

Contig contig_48724
Source Contig contig_48724
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48724 (8508 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_48724

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64368	1	1339 bp	MLOC_64368.1	Available	Available	LOC_Os02g44108.1, FRAME:+3, EVALUE:2e-115, 13102.m04915 protein expansin precursor, putative, expressed
CDS Structure of MLOC_64368

Contig Sequence (8508 bp)

>contig_48724 8508 assembly3_WGSMorex_rbca.fasta
CCCTCGCCCGGCTGTCTGCGTGCCGGAGGACTCGGGCTGCTACTTTACCATAACTCGCTG
GATCGAGGAGGTGAAGGCGTCACCAAGTTGTATGTGTGTTGAACGCGGAGGTGTTGTCCG
TTAGCCAGTTGATCGGGAGATCGCGGGACAGTTCGCGATTGAATCGCGAAGACGTACCAC
TACATCAACCCGTTCTTGAATGCTTCCGCTTAGCGATATATAATGGTATGTAGATTCAAT
CTTTCCTCTCGTAGATGGTCATCACCATGAATAGATCGTGTTTGCACGTAGGAAAATTTT
TGTTTCCCATGCAATATTTTCCAACTCGTCATGCTAACTTAAACGGATTGTGAGTTATAG
AAAAGTTTTGAGTAATCTAGTACATAATTTTTTATTGGGTGTGTGGATGCTCTGTACAAG
AAACGAGCAAGTACCGAACGTTTTTAAATAACTAAGGCCTTAATTAAATGCGAGATGACA
CAAGATTTCTTAAGAAATAAGCAATGAAGAGACAAACATGTCCACATTAGATGGCTTCAC
GAGTCCACACACGCATGATTCGCATGTATGCGGACAATTTGAGAGTCCGCATTAGAGATG
TCCTTAAAGGAGACCCTCAAAGATTCGGTGTATGTCCGTACTATAGTGTCTCAATAATTT
ATGTTAATTTTGGTCATCTAATGAAGAGCCCATTGGTCAGTGAACTGGTCCGGACATCCG
TATTCCGACAAATCCGAGACAAATGTTGGGGAGCTATACCGGTTTTCACACATCCATTTG
ATGAATAAAAAGCAACCACGTGATACTTTTTTTCTCTACACATGCATAGTCCGCTCTTCT
CTTTTCTCTTCCAATTGGACAAATAAGGATTAATTTGTGAAAAACTTTGAATGACTCTCT
TCTGTATCATGTCCATAGATCACGACGAGACATAAAAACAGACATACATCGAAGTCATTT
GCAAGTCATCTTCAGATATGCCCTTATAGACACACTTTTATTCTCAAAAAGGAGGCAAAA
TATTTATCGCCATCTCATTAATTAATATAGGGGGATTAAATCTACTCCACTTCTAGTACA
CACACTAAGTTTAACCTTGCAACAAAGTGGGCTTAGAGCATCTACAGCCGCAACTTACAA
ATCCGACCCCTCAAGACACTCACCAGTCACACCTTAAATAATGTATTCTAAAACAGGACA
CCTCAAATTAGAAATCTCAAATTCATATTATTACATGCAACGTAAATCTAATACAATCGG
AGCTCATCCAGCTCCGCTGTGCCCCATGTCCAGCGGCTGGCTGCGCCCCCGGTAGTGTTA
GTCCGATCTTCGATGAGGTAGAGTAGGACATGGGTCACTAGCCAGCTCACGGGGGTCGAA
CTCCCGCTGTCTCCCATGCCCTACCTTTCCTCGTCGAAGCTCGTGACCCGGACGGTGACG
GCGGACGTCAGTCGATGATGGATCCTTCCTCGAAGGAGACGGTGTCGACCACGACGCAGT
TCTGGCACCCGCACCCGTGCATTATACGGGCCCCCGAATAGTGCGACTCCGCCTCTCCAA
CGTCCACCTCCATAAGGGCCTCCACTGCCTCCCGTGCATGCTGCCTCGCACCGCGGGCAT
GCCGCACCATGTTAGTGTCCGAGGACGCCCAAGGTGTGTCCTCAGCGCCCCAACGGAGGG
GTTGCGCATGTGTCATGGCGTTCGGACGCCATAGAGACCGCATCGGCTCCGGTGAGACAG
CGACACCGGATCGGGCACCAGTTGTGCTGACACAATGGATTGCCGACGTTGCGAGTCCGA
GGGCTGCCGCAGGGAGGCCGCCTTCGAGGAGCGGCGGAGCGCAAGCCGGACATCCATCTC
CTCCTCAGAGCCATGTGGGATGAGCTTGTGATCGACGAATGTGGAGGTGGAGGACTCGAA
TCCACTGCACGTCATGCCTTGAAGGCCGGAGATCACTGGAGGTGAGCTTGGGTGACGAAT
GGGAGTGGAGGGGAGTGGAGTGAAGTGGTTAGGGTTTGATCCGATGAGCGGATGAAGAAG
AATATATATGGGGTCAATGCGGGTTAGCGGGGGCCAAACGGGCGTGCCCGGTCTTCCCAT
ATCCGATCCATATTTGGGCTGGATATGAGGAGTGATGATCAACTCAAATGTTTGAGACCC
TTGAGGCCCGGCTGAGTCGATTTTTTGTGACTGACCGAGGAGCGTGACCAAACATTTGCG
ATGGTATGAAAGGCCCGACTATCGATGCGTTATGAACTTCTCAGTATGTGCGTTTTCCTA
TTGTATAGTCTATTTTTTTACACGAATTCGGCACGCATTATTTGTAGGCACTCGTAATAA
TTCGGTTAGCTTTTTCCTTCTACACCAACTTGTCACGTTCTCCTCAATAATTCGCCACGT
ACGTGTGAACCCCCGGGCCCAAGTGTTCACTATAAATACTGGCCTCGTGACCAGTCCTTC
AACTCACCCAACGAACATTCGAGCTAAGCTTATCTAGCTCGTAGCCTCTAAATTTTCGAG
CTCCTACTCCTTGGTGCTAGCAAGCTAGCAGCAGCAGCAGCAATGGCGAACGCTTGCACC
TTAGCGCTGCTTGGCGCGCTGCTGGTGCTCTCGCTTCTTGTGAGCCCCATTGCTTGCTCC
CGCAAGCTCGCCAAAGCCGTCGGGCAGCACAAGCCTGCTGCAGTCAAGGGCCACAAAAAC
CAGACCGCCACTAACCCCTCTTCGTCTGCCGCATACGGCAGCGGCTGGCTGCCCGCCGGC
GCCACGTACTACGGCAACCCCAACGGCGACGGCGGCGAGGGTTAGTGCCTTGCTTATTTT
ACTCTACTGTCGGTCTTATATCCATAACCCATGGGACCTACATCGCACCCACATTCATCA
AGCTGAAAGATACTTACGACAAGAAAACAAATCTGCAGGCGGAGCGTGTGGCTACCAGAC
CGCTGTCGGGCACCGGCCGTTCTCGTCGATGATCGCCGCCGGGAGCTCCCCTCTGTTCAT
GAAGGGCAAGGGCTGCGGCGCGTGCTATGATGTAAGCATAACTCACCAGGCCCCTTACAT
TAATGGCGCAAAGTGGTCGGCTCGGGTGATCCGGTCCTGACAAAGCTTGCTCATGTGGCG
TACGCAGGTTAAATGCTCGAGCAACTCGGCCTGCTCCGGGAAGCCTGTGACCGTGGTCAT
CACCGACTTGAGCCCCGGCAACCTGTACCCCGGCGAGCCGTGCCATTTTGACATGAGCGG
CACCGCCTTGGGCGCCATGGCGAAGCCTGGCATGGCCGACAAGCTCCGCGCCGGCGGCGT
CATCAGAATGCAGTACAAGAGGTATGCAGCGCAGCAACACTAGTAGTACATAGGACCCTC
TTCAGTCTACAGTCACACGGGAAATGACGGAATAAATGTGTGCTGATCTTGGTGTTCCTG
TGTTAATCATCCTAGAGTGCCATGCAAGTACCCTGGCGTCAACATTGCCTTCAGGGTGGA
CCAGGGCTCCAACCCCTTCTACTTCAAGACCCTGATCGAGTTCGAGGACGACGACGGCGA
CCTCAAGGCCGTGGCCCTCAAGGAGGCCGGCAGCGGCGCCTGGACGCAAATGACACAGGA
CTGGGGCGCGTTGTGGCGCCTCAACAACGGCAACCGGCTGCGCGCCCCCTTCTCGCTCCG
GCTCACCTCCGACTCCGGCAGGAAGCTCGTCGTCAACAACGTCATCCCCGCCAACTGGAA
GGCCGGAGCCACGTACCGCTCCCTGGTGAACTACCCCTGACCCTGAGTCACACCCATATT
TATCTGCTCAAGATGGCTCCTGCGTGTGAATTTTTATCCCGCGAAAAGAAAGAATGTGCG
TCCGGGTGCTGCGAGAGGCGGTGTCAGATGAGGAGGAGGAGCTTGCAAAACTGTAATGTT
CCCTCCCTGGTCTCTGCATTCCCCTAGTGATGTATCATGTGTATGTAGTCCGTCCGCCCG
TCCGTCTGTAATTTTACTTCTTTTTTTTGCCTTCCTCTGCTTTGTTGTCGAGGAGACGAT
TGAGCTGCAGCTAAAGCTGCATGTCGATGTACCCAAGTTGTGTGTTTTTTTACCACGCAA
TCCTTGAGATAAATGAATTTTCACGATCACTTGCTTATTATTCGAGGGAAATTACTACTG
AAGATGCAAACTACTAATACTCTGTACTGGACACTGGGAACCACCGGTAGCTGCGCTATT
GATTTTGCTCCCCTGTCATGCCGGCAGCTTGCCGAGGATGACACATGCGATTCTCCCGAA
AACGTAGACAAAGGAGCAGAGCCTTGAATGTCACAAATACTGATTGCACTACGTACTCAA
TTATTAACACAAACTGTTTAGGTTAAAGTATTCTTAAATCTTAATGGAGGGGCTTCAGTT
GTACGTACATGTAGGCACTACTCTATCAAAGGTCGGCGTACAGGATCTTCGGTTGTGTCG
TTTCGATAAACAGGGCTCGGTTGTACTACAGCGCTGCTCGGCATTATGAACTGGATAGCG
GCCAACCGGTTTGGCACGTGGCTCTCACAAATTAAGACCATTCACTTGTACTTCCTTCGT
CCTTAAATATAATTCCTTTTAAAGATTTTACTAAATAAGTACGGACATGGCTATTGAGGG
CAGCAGCGCGGGCGTATATGAGGACAATCAAAAATAAAATTCATATACATTTATTAGTGT
TTTAAAGAAATTCAAAAAGTCATAACTTCTGAACCGAGCGTCAGAATGACGATCTGTTTT
CATGGTTGTGTTTCTTACGACGAGCTTTTCGAAGCTAGATCCCATATGGATAGGTTTTGA
CGAACTTTATTTTTAAGCAACTTTGTGTGCTAGATGAGGCAACTTTAGTGTTATAGCCAA
GCAACTCCTCCCCCCTCCCCCTAGTATGACTATCTATCAGCGAAGAATTCTTCNNNNNTG
GTTACCACGACTAACAGTTGACTACATTCATCTCTAAAAGGTTTACATAATTAAACAATG
ACGATCAGTTGCCTATGATTGATGCTCAATTGCCTATAAATACTGTAAAATTGCTCAATT
TTGATGCTCAGTTACATAAAAAATACTACGAAATTGCTCAATTGCCTATTATTGATGGTC
AATTGCCTATGGTTGATGATCAGTTGCGTGCCGTTAATGCTCAGTTGCCTGCTATATGTG
AATAGTTGCCATAATTGAACTTGAGTATCACAAACAAGTTAGCAACTTTCAGTGTGTTTT
TTGCGCAACTCTAGTGCATTCAACAAGCAACTCAAGTGTATACACATGATGCAGTTCATC
TAGCATTAAAAGTTACTTATGTTTAGCACTAAAGTTGCCTTATCTAGCATCGAAGTTGCT
TTTGAAAAAATTCTTCAAAACATATTCATATGGGATCTCATTTTGAAGAATTTGTCATGA
GAAACCCAACGGTGAAAACATATCGTAATTCTAACACACTGTTTGATAGTTATAGCTTTT
TTTAAAAAAAATACACGAATTAATGGACATCCAACGCATGCCGAGCCGAGCATGCACATC
CGACACATAATTTAACAATTTAAGTTTAGAAATAGCTGACCACATTTGCCATGTGGTTGC
TAAAGGGTGAAGTTATTTAACCTTCTAGTCATGATAGATAATTTTAAAGGAATTTTCTTG
GATAGGCGATCATACTACGCACACTAATAAGAAGTTGCTTTTCTTTAACACTAAAGTTGC
CTAAATATCACCCCACGGGTGCTCAAAAAATTGTCAAAATCTATCCATATGGGATCTAGT
TTTGANNNNNNNNNNNNNNNAAACACAACCGTGAAAACAGATCATCATTCTCACACTCGG
TTCAAAAGTTATAGTATTTAAAAAAACAAATAAAGTCGAATGATTTGCTGCAAATTTCCG
CGTGAGGGTGCATTTGTTCGAGTCAAATAGTGCAGCTGCACTTTTTAGCATGTGGGAAGA
AGTACATATGAAACAAAAAGAGTCAATTTATACTACTTTCAAGTATGTCTATATGCATCT
GTATGTAGTCTAGTGAAACATTTAACAGACTTATATTTAAAAATGAAGAGAGTAGAAAAT
AACATCCATACCCCAATTTCTACAAAAATATGTATGTGTAATTGTGTATGATATTTATAA
GTTCTTTTTCTCGAAACTATCACCAAAGAAAGGTTCCCCAATTTGATCTCACCTAAAAAT
GGAAAGTTGGTTCAATTTATAAGGGAAGCCACACAAAAAAACCTAAACAAGACAACTTGT
TTATAAGAAAAAAGTAAACCAAAAAACACACGAGGAGCAAGGCCTTCTCGATCACACAAC
TCTAGACCATAGTCACCCCCCCACACACACAAACGGATCCGGAGCCACCGCTTCGCAAGG
CCGCACCACTCGAATACCATGACCACCAAACCTGAAAGCAACGGCAAAAGGAGAAGTATA
TGGCGGCACCATGATGCCCAAATGCAAGAGCAGCGGACAACACAGCCATTGCCAGCCGAG
CACGGGCACATGCACTAAAGAGAAAGATGAGGGTTTGTTGCAACACCTTCAAGAAGGAAC
ACGACGCCTGAGGGAGCGGATTAAGGGGTCCTCGGGTAGTCGGGTTGTCCCTTATGGGCC
CATCATATGGGATGCGTCATTGAAGACCCGATTATCTGAAAACTGCGTAATCAAGATGGA
AACCTTCGAAGACTAGGCGTGCACTCCAAGGCAGGAGGANNNNNNNNNNNNNNNNNCCCC
CGATCTAAGTCGGTAACATGTAACCCTAAGGGCATTGGTATCTATATAAACCAGAGGCTC
TTATGCATAGAGGCAAATTATCTCATCTAGGGTTTTAGCTCGTACAATCTCGAGGTAGAT
CAACTCTGTAACAAATGTTACCCATCAATATAATCAAGCAGGACGTGGGGTTCTACCTCT
TCAAGAGGGCCCGAANNNNNNNAAACATCGTCTCCCCCTCTTTCCTGCCACCCATCGATC
TAAACTCCATAGTTCGGGACCCCCTACCCGAGATTTGCCGGTTTTGACGCCGACAACGCC
CATGGGCAGAGCTTTCACTTCAAACCATATCATTCAGAACAAAGATACCCAACCGTAGCA
TGGATCCCCAGGGCGACACGGGAACAACCCGAAATCGAGTGGTTGCGAGTGTGCAACCGG
GTGCAAAGACAAGCAACACCGCTTAGGTGGACATCGACATAGGAGTCGGACCCCATCGAG
GCACTAGACAAAACATATGCCCGTAGGAGTATGGGAAGCCGGCACGGTCACAACTAACGT
ACATGACCCATGCGATACAAATTTGCTACTTGCCATGGGCCAAGACTGCCTCACAAAGAA
AGCAAAACGGGATTGCCGCACACTTCGGCGCAGAGGTGATGCATGACGCCATGTCCAAAG
CCCCCTCCCTTTCCCTGCCCCTCTTTCCCAGGTCCAAACAACAATGAATATTGTAGCTAG
GAAGAAGCCACTAAGAAGGGAGCTTCATGGGACAAAGTGGTCGACAACACCAAGTAGCCA
TTGCGCACCGGTATAAAAATCGAGCGAGCAACAGGAATCCACTTTGGGGCGCCATTGTGA
CGGACGCTGAGTTGGATTGCTCGAGCATGGTTGGTTTTGAGGTTGCCCGTTGAGGCGGGA
GAAGGGGGTTAACGAATGTTGTCAATAGCCTAGGGCAAGAGATGGATGGTATAGAGTCGA
GGAGTTGAGGGATTGGGAAGAGCGACAGGTATAGACACCCCGATGTCGTTATCTGCTGCC
CATTGACCTCCACCTCCACGGGCAAGAATATTTGGTGGTTGGTTGGTAAGAAATATCAAG
TGTTCCTCGAGCTCACTTGCTCTAATGCCATGGGAGCTCCTAGAGCAGTGAGCCATGGAT
CAATTGGTCACCTTCATAGCCTTTGGAGGTTTTTCCAATTTTGCATGAGCTCTCCTTTGA
TCGTTGGATCTCTCATCCAGAGATCCAACGCCTAGGTGCTCCCTTAGCACGGGAGTATGT
GACTATGGGAGTGATGACCCACAAGTATANNNNNNNNNNNNNAGTCCTTTTGATAAGTAA
GAGTGCCATACCCAGCGAGGAGCACAAAGAATGGCAAGTTGTTTTAGCAAGGTAGTATCT
ACAAGCACTGAAACTAGCGGTAACAGATACTCCCTCCATCCTAAAATTCTTGTCTTAGAT
TTGTCTAGATATGAATGTATCNNNTCACGTTTTAGTATTTAGATATATTCGTTTCTAGAG
AAACCTAAGAAAGGAATTTTGGGACGGAGGGAGTAGTTTTGTAGTAAAGCAATTCTTAAC
AAGTAACAAGTAACAATTATAGTAAAGGTGCAACAAGGTGGCCCAATCCTTTTTACACCA
AAGGACAAGTTGGAACTTTCTCTTATAGGAAGTAAAGCGCTCTCGAGGACACANNNNAAT
TGTCATCTAGTCACGTTCATCATGTTTAGTTGATTCATGTTCGGTACTTTGATAATTTGA
TNTGTGGGTGGACCGGTGCTAGGGTGATGCTCTTACTTGAACAAACAA