Map Locations of contig_48710 (10031 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_48710

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64359 2 1039 bp None Available Available None
MLOC_64360 8 1181 bp None Available Available None





CDS Structure of MLOC_64359






CDS Structure of MLOC_64360






Contig Sequence (10031 bp)

>contig_48710 10031 assembly3_WGSMorex_rbca.fasta
TGGTCAAGCCTCCCCCAAGCTTGTGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATATTTCTCACAGAAGTAGTAT
ATCATATCCACATCATTATCAGCCACTCTAGCCTTATGCCCGCCGCTCTCGATCTTCTCC
GAGCATAGCTCGATGGCGGATCTGCTTTGTCACCATCTTATAAGATGCTGCCTCCTACTT
GGCCGTCTCATATTCGGACCTGAGTTTCTCCAAAGCCATTTCCATTGCTGCTGAGATAAT
GGAAATCACGATGTCATATACAAAAGCCAGACAGTACTAAACTACAGAAGTACAAAAATA
GTCTTAGAAGCATGCATTAAGCTTACCCTTCTTCTCGTCTAGCCAACAATTAAGTCGATT
GAGTTCCTCGTCGGAAACCTCCAGTTTCCAATTCAGCTCGGCAAGTTCAAGGGCGTTGGT
AGCCACAACCGAGGATTAGTCCTACGAGACAAAATAGGGTTTGATAAGCACTCGCGCTGA
CGGGACTAGGATATTTGGCCGAAGTACCCTACTGAGTTGTTATAGCTCATGGGACCCCGA
ACTGATTTTGTTCAAAGACCATGAAGTCTTTTCAACCAATGGAATGGTTTTATACTCACC
AATGGATCGGTTGTTATCATACCAATAAGGCATGTAAATACCTTAGAAACAAATTTCTAA
CTACTTGGTTTACCTTGAAACCTGCTTGCAAATCGCTGAAGGCTCCCTTCAGTCCGCTAT
CAATAGACTGGAGGCTTTGAAGAATAGCACCCATAAGGATGTGATGTTGATTAGTGATGG
ACGAGCCGTATAGAGCGTATCCCATCATTGCAGGCCACTCGACCGCAGCTTGACCTTTCA
CAGGCGGCACCAGAGGCAACGCTGAAGATGCCAGAGGATTGGAGCTCCTTGGAGTTGTCT
CCGGAGGAATCTCGAATGCATTATGGCCCTCCTCTCCCCTCGTTAGGATGGAATCGACCT
CCTGCGTTCTGGTGACCAAGGCATGAACCTCGGCCGGAACCTCATCCTCTTCGGTGGCTG
AGGTGTTTACCTCGACCACCACCACCTCGTCCGATGGCTGAGGGACATTAGTGCAGGATG
CATTGCTGCTCTCCGCCGGTTTGGCCGGTGGTGAACCCCCCTCCGAGACCTAATTGGTCC
CGAGGTCTCGGGCAGGGTTGTGTAAGAGAAATGAGCATGTATGTTTATCAATCCCTGCTC
AGTATAATTCCATTAAATATAATTTGGATTATGTACCTTTGGGGCGATGGCTTAATCCTT
GGGGTCCTTCGGGGAGCCATCTCGAAGGCCATGGAGTCAAGCTCAGAATCTGAGCTGTCA
TCTGGCAGAATGAACTTGCTTCGGCAGGGTCTCTTTGGGGCCTCGGGAGGCAGGCCCTCC
TTGGCCTCCTCCGGCATCGTCCTGTTTCTTGTTTGGAGGGAATATTTTTATTCTCGATCC
TCTGCATCCCCTTCCTCGTAGACGGAGGAAACATAGGTGTCTATAGACTTCGTGTCCCGA
GGACCCCTTGAGAAGAGACCCCGTGAGTGTGCCTTTTCTTCTTGTCTTTTTTCTTTGCCG
CCATGTATGACGCCCCTACTAGCATCGCAGTCAGCAATTGCGACGTAGGGTCGTCGGGTA
GGGCCTTGGCCATTTATTTTCTTGGCCTTTTCCAGCCAGTCCTGCACGTACAGTGGGGGA
AAGAATAAGATCCCTGATAAAGATTAAAATCTTTAAATAAAGAATAAAGGCTTTGTCATA
ACTCCGAGGGAGGGTGATCAACATCGAAGCCGACGTCTTCCTCCTTGGATAGCCATCATG
TTGAGGTTTGAACAATAGTTTCCATAATTTCTTTAGGGTAGTGTGGTACAACTGGCTCAC
GCTGTGAGGGTCGTCGAGCTTGTAGGACCACATTCGAGAGTCTTGACGCTGGCAGTGAAG
GATGCAGCGGTGGAGCATGATCAGAACCACGTTTGTCACCTTGATATTCACCTCCACCCT
CTTCTTGAAGCGATTCTATAGCATTTTCACCTCCGACGATGATCCCCAGTCCACACCCCT
TCTCACCCACGAGGTTAGCCTCTCGGGGCGTTCGGATCTAAACTCGGCACGCACTGAGCA
GTTTGCTTCCCAAGGCTCGTGATATAAAACCACTCGTTTTGCCATACCTTGATGGTGTCG
ATTAAAGTGCCCTCCGGCCATTTAACCCCATGGCAGCTTGCTAATCACGGTTCCTCCATA
GTCAGCGTGTTGTGCGCTGACTTACTTTGGCTTGACGTTGAAAGTCTTGATGAACCCGCA
GGAAGGCCTCACAAAGGGTGATGAAGGAACAAATGTACAAGAATAAGTTCGGGCGAAGAT
CATGAAAACCTAATCCGTAGTAGAACATCAGGCCGGTGACGAAGGGGTGGAGTGAGAAGC
TTAGTCCCCACGTGAAGTGGTGGATGAACACTACTCTTTCACCTGACCATGGAGTAGGCA
CCACCTGGCCTTCCTCCGACGCATGGTGGTCAATATCCGGCGAAATATAGATGGAATCCT
TCACCTCCCGGATGTCCTAGTACGAGATGCATGAGACGTCCCACTTGCCGTGAGATCCTG
AGCCAGCCATGGATGAGTTTGGGGGAGGACGGCTGGAGGAGGACAGAAAAGAGAAATGGA
TATGGGAACTTGGAAGCTAGAATGGGAGGGGTCGAATCCTTAATTCCTGTGGCGGCTTTG
TGGATCTTTTTCCCTTTAATGGAGGGGACACAAGGCCAAGGGTTCCCGTTTATTGCATTG
CAGGCCCTGCCAGTTCCTGAATCAACTGTGCTAGTGAATTGCCTCATTGACAAGACGTGC
CCGTGAGAGAGTGGCCTCGAATTGCGAATCGAGTTTTCCACATAATTGGTTATCGCGACC
TTTCTTCACAAAGGTTGTGACATGAGGAACTATTCATACTTGGGATTCTTAGCCTTCTTA
ATAAGTCGCCCCTCTATTAAAAGCACGTCGTCCCGAAGCGACCAAGTTTAAACCAGCCGA
ACATGAAGGGAACTCACCTCGCAAGCCTATTACTCTAGATACAAGGAGATTCCGAAGGCC
ATACACATCAATGTTGGATGCTAGTTCGGGGGTTACTAAGGGAGTCCCGGATTAAAGGGT
CCTAGTACGGATGGGATATTTCTCACAAGACGACCTAATGGGCTGCATTATTGAACACGT
GACTACGTGACGACCGCGTGGACACACAAGAAAGCTCGGAAGACTGGCGTGTCGTCCAAG
TTGAGTATGCTAGATCGGCGCATCCATCCCCGATTGGAGGTCGGTTGTATGTAACCCTAG
GGACCCTTGTTGTCTATAGAAACCAAATGGTTTCATCCGCATAGGCAAGTTGATTCATCT
ACGGTTTTATCTCATACGATCTCGAGCTAGATCAACTATGTAATCCTCATACACCATCAA
TATAATCAAGCAAGACATAGGGTTTTACCTTCTCAAGAGGGGTCGACCCTGGGTCAATAT
TGTCTCCTTCGTCCCCAACAACCCATCGATCCAAGGTCCACAGCTCGAGACCTTGTACCC
GAGATCTGCCAATTTTGACACCGACACCTCATAGAATCAGTACCTTCATGCACATCTACC
GAAGTATCCCAAATTTCCTTTCCATTCTCAAGGCGGATGATATTGTTGAATTCTTTAGGT
CACAAGTAGTTGAATAGGATGTCACCCACTTGAGCATTATATTGCAACATCTTCAATCAC
TACAAGAAATATGTCCATACATGACCCACCATCTTGGTCACTGAATTGTCACTGTTTTGC
GTTAATGACCTTCTTTTGACCAAATTTAGAAGGTCAACAGTTGGCCGTCAAGAATGAAGA
AGCATGACCTTCTCTAAAGTTTTGGTCATGGAAATCATTGACCAAAATTTTAGTCATAAA
ATCCATGACCAAAATTTTGGTCCTTAGCCATGTGTCTAAGCCACGTAGGGTGTGACATGG
AGTTATCCACGTGGCAGAAGAAACGACAAGTTACACATGATGATGTGGCTGCCACATAGG
ATCACCAGGTCCAATGATGAAAATGAGCCCAATCCAAATGTAGTGCGTTGATGGGCCAAG
GCCAAGTGTTCAGCCCATTTATGCATTCATTATAAAATCAGTTGGGCCATAAAAAATACT
CGATTATGATTCAGTTAGCCCTTTTTTAGGGCTGATATCTTATGGACTTTTGAAATTGCT
TTATTCTTTTCCCAGCGTGGTACAATTCCATGGAGCCATTTTTTTGCAATTATAACAATA
AATGCAGTACATGTAGCAACATTCGAAATCACAACACAGGCAAATATGATATTACATACA
AGTTTGATACATTCAACACTAAATAAAACAAACCAATGATACCAATAGTCACACCAATCA
AAGAAAAGGTACATCTCTACATCATCTAGCTATTCTAGATATGGCTTTCATTATCTTCCT
CTTCCAAACTTCTGAGAGCATGAAGGATCACAGATGAGAAGCAAGCCTCAAATAAAAAGT
AAAGAAACAAAAGATTATCATATAGCATTAAATACAAAAAAATCAGCAAGTTCAACAATA
GTGTAAAAACATCCATTTCAAAGTTTCGAATACTTAAATGAAAACAAAAATCTTACTTAT
GAAAGGAGCACTCAGTACATAATGATCATTTGATGATTATTCAAAGGACCACAAAAGGAT
GTACTTGTAATTATTTAAAGAGGTAATTGTCGATAACAATGTGAGGTGCACAAATTTAGA
AGTGCTAGAACCATCCACTACCTACCACAAATTAGTTAATACTTATACAACTAAGACTTG
GGAGAAGCAAAGCGCACACACATTCCCATTAAAGTATAACACCTCCACTAGTATATTAGT
ATTGTAAACTGCTCCCTCCGTTCCTAAATACTAAGTCTTTTTAGAAGATCCATTAGGTGA
CTACATACGGATGTACATAGACATACTTTAGAGTGTAGATTCGCCCATTTTGCTCCGTAT
GTAGTCACCTAGTGATATATTTAAAAAGACTTATATTTAGGAATGAAGGGAGTAAATCCT
TTCTAACTAGTTCAATGAAATGGTGCTTTTTCAATGAACGAAAAACTATAAAAGAATAAT
TACTTCCTAAATCAAAATCTAACATGAGTAACAATATAAGTTCAAATTTCACAGATATAA
TAACATGACAAAAAATCAACTGATTATACGACAACACTAACATCAGCAACACTCATATCG
ACCATCCACATGCAACTAGTCAACTATGATAGTTACCATGAAGATGCATGAGAGTGACTC
AAACTTATAGGGAAAGGGGGATGAGGAACATCAGTTTTGTCCACCACGATGACGATTCCC
ATTGTGCTGCTCTTGCTGTTCAAAGTTCAAACCTGTAAGATCAAGGTTGTAGTTAAAGGT
AAATATCTTACAGATAATGGTGGTCTAATGGAAACGGGCATGCAGATTTCATAGCTAGTG
AGTGTGATCAAACATAAATGATAGGAATCTCTGAAGTTCTAAAAGTTCGACGTTTGAGTA
ATCTACTAATATAGCATGAAATAAGAAGTAACAAATCTGTATGATCTTTGCAATAGAAAT
TATCTCACACGAGTACATGCACCTTCATTTGAAAACAAAAGGTTCTTTATGCAACTTCCA
ACTACAAAATTACTTTATAGACAAAAAAACTAGAGAAGCAAATGTCCCGTTATTGCTCAT
TTTTATGAACTACTCCCCCCGTCCAAAATAAGTGTCACTTCTTTAGTACAAAATTTTAAC
TAACTTAGTATTAAATTTGTTTCACTTATTTTGGGACAGAGGGAGTAGATTTTATATGAT
TCCTGCAATTTCAGTTTAGGCCATTGACAGATAGTGTCAGGCACAATAGTATTCATCACT
AGGCGTGGTAGTTGCTAAAAAATAGTGCAAAAACAAAATCGCAATGTTGTCAAAGACTAG
CTGGATGCATATGAAGCTAGATAGTGTTCATCCGATGAGAGACAAATTAGAAGAGAGGAA
CCTAAGCTAGCAATCAGTCATGGTTCTCCGAAACCGCACACAAAAGTTTTGTTCTCCTTA
GCATCTCTCTAATCTTGAGAACTCACAAAAAACAGCAGAAAACCATCAATTGGTACGTTA
TAAAACCTTCTGATATAACATATGTTTTGCACAACAAAACACTTCCAAACACTCCTTCGG
CACTCATAACTCTCCTCGTGCCCATCATCATCTTGAGCCACGCCACCGGATGCATCTGCA
TGTCATCCATGTGATAGTTGATTAATGTACATTCCCAGCAGCCAAGAAGATGACATGATA
GAAAACCATATGACAATTGGGAAGGAAACATAAGGTCTGCTATGTTCAGACAAACTGAGG
TAACAGAATATTACAACTGAAACAAATTGTCTTTTCAAGCCGATACAACATCGATGTTAA
AACAAAAATGACACCAGTATGCACCACTTAAAGTAGAATATATGTTCACCTCATTTCTTG
GCTTACAACAATATATAGGATCCCTCCGAGCCACTGATTCCAATGGCAGCACGCCAAAAT
TCTAGACATCGATCTTCTTTTTCAACATATCTAAGTTGGCATATTCATAGGCCACATACC
TAAAACAATGAAAGAATGAAAGGTAAGCACTCCTAGAAAGTTGACTGCTTTTATGCATAA
AGAATAAAATCCTCCACGTGTTAAATCCTCATGGAGAAAGCATAAAAAATCATTGTTCTC
ATAGAAACCTCAAACTACATGCATACTTTAGAATCTTTTATACATACTGCAATATTTCAC
AATCATTCTACTGGTGATACTTGCAGCATCTTATGAGAAAGATTTCACAATCATGAGTAC
CGTTGTATTAAGAAATGCATGGACGATATATAACCGCTACTCTGTATTAGATCTAACATA
CTAATATTCTACTAGGTATTACTAAACTTTAAATTAATTCGTACTACCACACTAAGGCTA
CTTTTGGTACAATGCTATGGACTCTCTACCTCCAGCAATCAACACACACGCAACATACAT
ACATCAGACACATGCATAATGCACACACGCACCGCGTACAACACGCACACGCATCATTCA
GCGCAGCAAACCACATCCAGCACACACCTATCATCCAATGAGCAGAACTGAGGGAAGGAT
GGGACAGTGGTACTGATACCTCTGATGGAAAGTGGCTGAAGTAGAGCATCGGTGTTGTGT
CGGTACCAAAGATATGCTCCGGTAAGGAGAGGAGCAGCGGGTGGGCTTCAGTGGTGATGT
CGCGACATCTCGGGGAGGCAGTCAGACGTGCGAGAAGAAACTTGGGGAGTCGGTGGCGAA
GCCGCGCTCATCAGCGGGAGAGGCAGCTCGGGGAGGCCGAGGGCTCGGAGGCAGGAGAGG
CCCCTCGGTTGTGGAAATTTTGCGCTCAATGGCAGGTCGAGAAGCTTGGAAGAGAGTGCT
TCAGCGTCGATGGAGATCTCTATCCAGCAAGCGGAGAAGAGGATGGATTACAGTGGCTAT
AGATCGTGCTGGCGGCGGCGGCGCTAAAGGAGAAACCCTAACAGATGGTGGCTTCGGCCT
TTGGGGTGTTGGGAGGTAGAATAGGAGGATTAGGATTTGGATTGTGGCTGCGTGGACATG
TGGGAAGGGGTCTTGGCCCAAAATTTTCGACTGTGCTAAAAATGTACGGGAAATGAAATA
TAAACCCCGCAGGCAACCAAAAAATCGCGCATTGTCGAGCGCCTGAGGCAATCAAGGTGG
CTACTTTGTCTTAAAAAATCAAGGTGACTACTGACCTTAAAAAGGTAGCTACAGTGTGTC
CTTCTCCTTTTGCTTTTCTAAAGCTTGGTGGCATCTATATGGCTCTGCCCTCAAAGAAAA
AAATCTATGTGGTGCAAATCCTATGAAAATTTAATATGTGATTTTTTGGCTAGAAATTCA
TATTTAGTAGAGTGTACTATCATTTCTTTTCTATCCCTTGAATTTGTCAATAGTTCTAGA
GTTGGCTTGATCAAAGACCCGAGTTTTGTCATCAACTGCATGACAGTTTGTGACCGGATT
ATAATTTGATAAAATAAAGCTCTGAGTTCTATGAAAACAAAACTGGCTTCCGTTAAAATT
GTAGATTTTGGAAGTGGGTAAAATATAATTAAGAGATTAAATTTCAATTTGCAACACAAA
CCAAAAAACGTTCGACATTGCACTCACGGAAGCATCATCTCACGTGTGTGCAATTCAGTA
TTTACCATCATGTAGGCATTATGAAATACATTTCCAAGTTCTTATGTAATATAATTTGAA
TTTTAAGTACGTGTATCTCAAAGAAAGTCTATAAATCAAACAAATAACTTATTTTAAGTA
TTTATGTATATTTCTAGTATCAAGCACGTATATGAAAGAATGAGTTGCATGTCCTATGCG
GGCCTATCGTCTCGTGGGTCAGTTCTTGAGCCTATTAGGTTATCCCACATGTTAAATGTG
GGTCCCCGTAGTCATTTGCATTTGTAACACAATATGTGTGTCCCACCTATTAGTGTAGTT
ATACTCTATGGCTCAAACACGTAATTGACAATTATACATGACATGTAGGCAAAAGTGATA
AGGTGTTTGTCCATCCATCTCTATTCAACCCTATGACCTTGTTGAATTGGTCATGTAGGG
CATGAAATAAGCACATAAATAGTGTTATACATTTCAATGACCATTTGGTGCAATGGAATT
ATGACCTTCTGAGAAGAAATAGTCATGGTGGTATAGGGTTTGGACCTTCTTAAACATCAC
ATGACCCTTTTGTAAAATTTGGTCATAAATTTATGACGAATTTGACTCCGGTCATTATTT
TTGGTCATAAATGGGAAAATTACTTGTAGTGAATAATTCCGTTGGCGCATCATGATCCAG
TTCTCTTCCTTCTTCCAAGAAAACACCTTGCACACCAACACGAACAACAGCCCAAATGAC
AGGATTATGACCAAGAATACGCATTTTCATCTTATGCTTCCAAATAGCAAAGTTTGTACC
ATCAGAATATGGGCTTCTACGGTGATAATTTCCCTCCCTAGACACCATACTCTCCTAGGT
TGTGAAACCAAGGCAATGGAGATCAAACCTCTCATACCACTTGTAGGATCTGAAGTATGT
CTAGAGGGGGGTTATTTAGACTACTCGACAAAATAAAAACTTAGCATTTCCCAATTTTAG
TTGTGGGCCAATTTTAGGAATTATGAGTAGTCAAGTTCACCCTACTCCTTCATACCTAAG
AGTATAGAAGCGGAAAGTAAAGACATGCAAATGTAATGTAGAGTGTACGGTAGGAAGATC
AAACGCAAGGGTTGACACAGCGATTTTTGGCGTGGTTNNNNNNNGTGGTGCTATCGTACG
TTCACGTTAGTGGAGATTTCATCCCATGGAGGGTAACGGCTAGGAAAGTCCACGGTGGGC
TCCACCTACAAGGGGTCACCAAAGAAGCGGCTTTGTGTATTCCACCATGGCTTACGTCCA
CACAAGACAAGCCTCGCTCGTGGTAGATCTTCACTAAGTAGGGGATCTCCTTGCCATTAC
AAGCTTCTTGGTTCGACTCCACAACACGANNNNNNAGGCTACCAAGCGACACCTAACCAA
TTTAGGAGGCACCACCCACCAAAAGCTAATAGATGCGGTTGAACGATGAACTTGTTCCTC
TTGTGCTTCAAAAGATAGTATCCTCAACAATCAATCACTCTCTTACAGATTTGGCATGTG
TAGGAGAGATTGACTTTGTGGAAGGCCACTTGGAGAGGGTAGAGATCAAGTTTGGAATGC
TTGAATTGGAATCTCTTGATCTCAACACATGAATAGGTGGCTCTATCTCAAAAAATGGGT
CTAGCAAGAGGGTGTGTGTTCTTAGTGCTTCCTCTGTGAATGAGAGGNNNNNNNNNNNNA
TATATAGGCATCCCCAAAATCCACCCATTACAACATTATTGCCCAACACGGTGACACCAA
AATGAATCTCG