morexGenes - Barley RNA-seq Database

Contig contig_48651
Source Contig contig_48651
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48651 (7379 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_48651

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64326	3	2216 bp	MLOC_64326.1	Available	Available	LOC_Os05g01990.1, FRAME:+3, EVALUE:0.0, 13105.m00147 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
MLOC_64327	1	839 bp	AK365325	Available	Available	None
CDS Structure of MLOC_64326

CDS Structure of MLOC_64327

Contig Sequence (7379 bp)

>contig_48651 7379 assembly3_WGSMorex_rbca.fasta
GCGCTACTTAACCCCTCTGGGACGCCGGAAAACCCCCCCCCCTGTTCCCCCTCCGGCCCC
CCCCAACCCCCCCCCCCCCCTCCCCCCCCCCCATGGCCGCCAAGAGGAAGCTCGGCAGGC
CGCCGCCGGCGGCCACCCCAGCGGCGCCGAAGGCCAAGGAGGACGACGCGGAGGGGCTCT
TCTCCTCGCGCTCCTTCGCCGACCTCGGCCTCCACCCCACCCTCTGCGCCCACCTCCAAG
GTGCCCCCCTCCCTCCCTCCCCTCACCAAATCAGCGTACAAAGAACGCAAATTTCACGGC
TCTCCGTCCTGAGCTGGGACGAGAGCTTCCGCTCGCCGATGGTTACTCCGGTTCCGTTTC
TCTGGTGCAGACAAGATGGGTTTCCAGGGGCCGACGCGGATCCAGGCCCAGGCGATCCCC
GTCGCCATGTCCGGGCAGCACCTGTACGCGCCCCATCACATCCATCGTCATCAGAGCCTC
ATCTTGCTCATCAATGTAATCAGAGTGCTGCTTTAGTTCTGTGTATGTGAAGAGGTTTCG
TTGTTCTTGCCGTCGCCAACTGCAGGCTCGTGAAGGCGGCCACCGGCACCGGCAAGACGC
TCGCGTACCTCGCGCCCATCGTCCACCTTCTCCAGATGAGGGAGCCTCGTGTCGAGAGAA
CTCATGGGACCTTCGGTAATGGCTCGTTGCACTCTGCTCTTGTCAGTTGCTGTATGAAGG
GTCCCCAGTTTAACCCATAATCAAATTTATATGCAACTGCGGAATAGTAAATCAGTCTAG
TTATCTTGTGAAGAACCCTTGATATTCTGAATGATGTTACTAATTCATTTGACTGCAGCG
TTGGTAATTGTTCCGACGCGAGAGCTGTGCCTCCAGGTTTATGGGATTGCGCAGCAGTTG
GTGCATCGTTTTCACTGGCTTGTCCCTGGGTATGTAATGGGTGGTGAGAGTAGATCAAAA
GAGAAAGCAAGACTACGGAAAGGTATATCTTGTCCCGTCAAGGAGTTGATGTAATTTCTC
GTAGATTGCTACCTTTATACAATATCTCGTATTTTGACTCTCTGCGTTTTCTCTAGGAAT
ATCAATCCTCATTGCCACTCCTGGGCGCCTTCTGGACCACTTGCAGCATACTTCATCATT
TGTTTATTCAAATTTGCGCTGGATAGTTTTCGATGAAGCTGACAGGTCTGCTAGTCATAA
ACTCATCATTTTCTTGACGATTTTCCATACAAGATATGTTATCCAGTGGACACAGCTCTT
ACTGCAACGGTGTTTATTTGTCTTCATGCAGCATTCTTGAGCTTGGTTTTGGAAAAGCAG
TCGAGGATATTTTAGGGCTCTTGGGTTCCAGAAATGATGCTTCTGATGAGAATAAAAGCA
AAACCGACCCTATGCAAAGGCAAAACCTTCTCTTATCAGCAACTCTGAACGAAAAGGTGA
ACCGCTTAGCCAACATTAGTTTGAAGAACCCAGTGATGATTGGACTTGACGAACAAAAGA
AGCCTTCTGAGAGGTCCAGTGCTCTAGGGAAGAAGCACACTTCCTTATTATCTGATGATG
AGGAGGAAATACCCGACAAGCACAACAATATAGTGGAACCTGCGGTTGATGATTTTAAGC
TTCCTGCACAATTGGTTCAAAGATATGTTAAAGGTAGTGGAAATTTGCTTGCTTGGAAAT
TTACATGCTTGTCATGTGTTGTTTTGGTAGTTGATGGCTTGATGCATTGTTTTCTGTTTT
ATGCAGTTTCATGTGGTTCGAGGCTTGCGGTTCTTCTTACCATTCTGAAATCTCAATTCG
AAAAACAAGTGTCCCAGAAGGTAACTTGTACAGTTTTCTTACGATGAAGCTGTTTAACTT
TCACTACACTATTTTTTTCCGCTACATGTTTTGCTTGTCATCCTGTATACTCTGTTCGTC
CTGAGAATTGAACTATTTTGAGTCAGTTTTCATCTTCCTTCTGCAGGTTGTTGTTTTCAT
GTCAACATGTGACGCTGTAGATTTCCACCACACTGTACTCAGCCAGCTTGAGTGGAGCCG
TGGCCTCGCATTAGACACAGATAAGAAGCAAAAATTTCTTGGCTGCAAAGTGTTCCGTTT
ACATGGTAACATGGACCAGGAAGACCGCAAAAAATCGTACTTGGGATTCAGTTCTGAAAA
ATCTGCAATCCTTGTATGTACTGATGTTGCTGCTAGAGGCTTGGACATTCCCAAAGTTAG
GTGCATCATACAGTATGATTCACCTGGAGAGGCTTCTGAATATGTTCACAGGTACTCACT
CCTTTAGCATCTCACACCATGCATTGTGACATGTAGGTTACTACTAGTCTGTTATTTTCT
CCATGATTTTTGCTACATTCTTTGTCCATATGCAACTGAATGAGTGAATGAAGCACAGAT
AGTTATGTCTCTTTGTTGCTGTCAATCTTGTACACTGTTTAGCTCTTTCTTGTGAATGCC
ACGGCGTTCTGTAGTTTTTATTTATTTATGAAGATTTGATATTTTTAGGCTAATATAGAC
AATTTGCCTCATACTTGTGTTGTACTAGTATCTTCTGGGTACGCTTCAGTTTCAGTAACA
CTTGTTTTTTATTATAGGGTTGGAAGAACTGCAAGGATTGGTGAAAAGGGGGAGGCCCTC
CTGTTTCTCCAACCGGTTGAAATCGACTACTTGAGAGACCTAGAGCTGCATGGTGTATCT
CTGACAGAATACCCCTTCCAGAAGGTGCTAGACGGTTTCCCTGTAAATGGAGAGAAGCCT
CTCAAGAGGAAGCCAATATCTTTGGATATGCATCCGTGGATACTGTCTGTACAGCGAACT
CTGGAAAATTACGTCGCATCCGAGGTAACATGGACTTTTGTTTTCCAACTTTGGTGGACA
CTTACAGCCCCGATTGCTCGTTTATTGTGAATATCGTGCTTTTGTCGATCTCAGCAAATG
TGCTATCTTCTTCTCTTATGCAGGCCACAACAAATAAGCTTGCCAGGGATGCCTTCTGTT
CCTGGCTTCGCGCTTACACCGCCCACCGAGGCGAGCTGAAGAAAATCTTCATGGTGAAGA
AGCTCCACCTGGGACATGTGGCGAGAAGCTTCGGGTTGAAGGAGCAACCCTCGTTGGTCG
GGAGGTCGCACCAGGTGCAACTCAAGAAGAGGAAGAAAGAACAGAAACGCGAAGGACAAG
GACCGACCAAACGGAGAAAATTCCCCACTAAGAAGTGAATTCCCCATGGTGGATCATTAC
CCGCTTGATGCTTTTGAAACTAACAGCGGCGACTTTGCGAAAGAACTTATGTAGTGGCCA
GAGAGCTAATTTGCTGTGAAATCATAGGATTTTGGTTATGTTTCCTGAAATGTACAATAT
TTGCTGTCATGAGACAATCTCTGATCATAACTCTTGTCTGTCAAAATCTCTTGCTCATCT
TTTCATCAGCTCACAACTATCTGCTTGTTTAAAATTCCAAAAATAACAAACTTCGCGGAT
GATTGGTATGTTTGTTGAAATGTACAATATTTGTTGTCATTAGACAACCTCTGATTGTAA
CTCTTGTTTTTTTGTCAAAATCTCATGCTCATATTTTCACCAGTTTACAAGCAAGTGATC
TGTTGTTCAAAATCGCAAAAATAACAAACTTTATGGAGAATCAATATGTTTCTTGAAATG
CACTCCCTTTGATCCATATTATTCGTCGCAGCTTTAGTACAACTTTAAGTCGTACTGAAG
CTATTACAAGTAACATGGATAAGAGGGAGCACAATATTTGTTGGCATCAGACAATCTCTG
ATCATAACTCTCGTCTTTTCATCTGTTTTACAAACAAGTGTTTTATCTGCTTGTTCAAAA
TCCCAACAAAAAAAAAAAATGCGGACACCCAATATGTTTCTTGAAATGCACAATATTTGT
TGTCATTAGACAACCTCTGATCATAACTCTTGTTTTTTTGTCAAAATCTCATGCTTGTCT
TTTCATCAGTTTACAAACAAGTGCTATCTGATATACTTGTCTGAAATCACAAAAAACAAC
ATATTTCATGGGGAATCGATAATATGTCAAAAACGTTCTTATTCAACAGACGCAAGATAA
TGATGTGCAATAGTTACATGGTAAGCAATGTTCTAGCTCATGCTGAATTGACCTACCCAT
ACTCATAAAAAATTACACCAGGATTCAGGAACAACATTACTGCCTGAAACCGATTCGATA
CACTGCTGCTGTTCTAAGGCTCTTTAATAATCTACAGAGGTTCTGGTGAACTCCCTTCGG
GCCGACCCGATCCGAAGGCGGAAGTCCCATCATGGTATGTTCAACAAAGGATCTTCTCAT
CAAAAGTGAGCCAGACTGTATACAAGAATCCATGAAAGCTGCAAGCAACAAGAACAAACT
TCTCTAGTCAGTAACCATCTGCTGATTGAATAAGTTTTGTCAGAGTAGTTATGCAAACAC
TTGCTACTGCTGCAAGAATAACCTGGCAGTATAAAAGAACCACATTTTTTACATACTTGC
TAGTGCATCTTCAAATGGCAGTCTGGATTTCAGAACAATTACAGAGAACAGCACGTCGTA
CAAGTAGAAATAACCAAATATTTGCTTGGACACAGCTAGATTAGTATTACCTGTGCCTCA
ATTTTTCTTGTCTTAGATTTGTCTGGATACAGATGTACCCAACACTAAAACGTGTCTAGA
TACATCCGTATCATGTATCTAGACAAATGTAAGAAAAGTAATTCGGGGCGGAAGGAGTAC
CACTGATTAAACAAAAATTGTTGAATGGAGGCTTTACCAGGAAAAGGGTGAAAGACGCGA
ACATCCCCTCCTGAAGCAGCGCGCCGTGGCCTCCAAACTCTTCCTCATCGACCTTCAATA
GTTGCGCATAGTACCAGTAAATTATGCCAGAGGAAATGGCCACGAACCTGTGAGAAAGTC
AGGCAGTATAACCATCAAAAGTTCAACATACTCTGATAATCAAAACAGGCACCTAATAAC
CGAAAACATATTCCAACAAAAAATACATCTCAATGGGCTCATGGCAGCAACACTAGATGT
CCATTTCAGTAATTCTCGAAATTCCTTCATTAATTCTATACTATTCACTGTTTATTTGCA
TAGAAGACAGCATTGATATAGACAGGAATATCTTCCGGCTCCGCCCCAGCTTCGGAAACA
GCTAGCAGTAATTATTACTTAAATCATGGGTGGCCATGACCCAAATTCTTGGAACCTCAT
GCCGGGAGACATGGAAGGTAAGGAAACAACCATACTCACAATCGAAGAAAAGAACCGAAA
CTGCAGCGCTGCAAGAACAAGTGTGGCTGTGCTCGGCTCATCGGGTAAAAGGAGTCTAGG
ATGAGTCTTGCAAGCAAGTCCAACAACTCACCAAAAACAACTCCCACATTATCTCTACAT
AGAAGCTCCCCTAAAAGGCACCCCCTCTAAATTCCGTTCAGCTCCAGCAGCACCCCCAAA
TGGCACCCTCCCCTGAATCACATTTGCAAATGCTAGTTCTCCAACGGCTAGTTTTCATGT
CCATATACGCAAACTTCATCTCCCCCATCTCTTGCCTCTTCCACATCCATTTCCCTGCCC
CTCCGCCGTCTCCCTTCGACGGGCCGTCGCAGCTTGGCCTGGCAGTACTTCCTGGATTCC
TCGTCGGACGAAGAGGAGCTACTCTACATGGCCGCAATCATGGCACAAGAAGAGCAAGAG
TGGCCGGACGCTCCTCCAGACCACGGCGGTTCTGTGGCAGCTGCGACCTCCCGCGTCCAC
CAGCCCACCGCATCCACCACATCCACCGTGACCTCCCGCATCCGCCGCGTGCCTCGCCCG
TCTCTGCTCCCCGGTCACCGCCGCGGCCGCGCCACTGATCACCTGCGCCTACGAGGACGG
CGGCGACCACCCTCTCAGCAGCGTGGCGGCCAGAAGGAGGAGGAGCCATCCGGCCGGCTT
CGTCGCGCGGACCGGGGAAGGATCGGCGCCGGAGGTCGGAGCCGAAGAGAGCGCATAAAG
AGAGGGGGGGTGGGGGCGGAGATTGGGTGCGTGCTTACAGGACGATCCAGGCGGCGCCGA
CGAGCGGGACGGCGCCCCAGAGGAGGCCGCAGGCGAGCCCCACGGCCTGCCGGATCCAGT
GCACCGCGTCCAGCAGCTGGTCCTTGTCCCACGGCGCCTCCGGGTCGAGGTACCGCGCCA
GCCCGGACGGCGCCGCGTGCCCTCCGCCGCCGCCGCCCCGCTGCGCCCCCTGGCTCCTCG
CCGCCTGCTTCTTCGCCGAGGACGTCGACGGCTTCGCCTTCGCCATGGCGGCGCGCGTCG
GCGGCGGCGAGATCGAGGGCGGCGATGGGATCGAGGCGGAGGATAAAAGAGTCTCCTTTC
CCTCTTTGGACTGAAGAAGAAGATCGTGCGTGTTTGGTTGGTTGGTTGGTGGCTGGCCTT
TTTGCGCGCAGGCCCTCGGATGACGCCGGTATTTACGTATATGCCCCGGGAAATGCAGGA
ATATAAAAGGCACATCATTGAAAGGTCGTATTATTTTGGATAAACTACTCCCCTCGTAAA
GAAACTTAATAGTGTTAATGAAACAAGGTGGGATGGTGTGCGATCAAATTAGATATGCAA
AAAGCCTATGACACAGTAGAGGGGGTATTCTTGGAGGCAATCCTGTTAAAACTCGGATTC
CATGCAGACTAGGTGAAGATGATCATGGTGTGTGTTTCCTCTGTTGATTACAGGGTGAGA
TATAACACAACGGAAACTGATTCATTCAAACCAACTAGAGATCTTCGACAGGGAGATCCG
TTATCACCATATCTATTCCTCCTTTGTACTGAAGGGCTCACGGCGTTATTGTTACAAGCA
GAGGTCGAAGGTGATCTAGCGGGAGTTAAAGTTTGCCGGGATGCACCGGCAGTTACAAAG
CTGCTATTTGCGGATGATTCATTGATTCTAATGAAGGCAAATGTAGCTAATGCTCTTCTC
TAAAAAAGTATTATTGGATCGCGCTGCTACTACTGTTTGGCTTCAGGGCAACTTGTTAGT
ACTCAGAAATCGAGCATTTTCTTCAGTCCAAGTACGGATGCCAATGCTAAAACTGATATG
TGCACAATCCTGGGTATTATGACAGAGGCTTTGAATGACAGATATTTGGGCCTTCCATCT
AATCCGGGGGTGGATAAAAGTGATGACTTCCAATACCTTGTTGATCGATTAGTCCAAAAG
TTGATGGGGTGGAAAGAGAGATGTCTTTCTACTAGGGGAAAGGAGGTGCTTTTGAAATCA
GTAGCACAGGCCATACCAACGTATGCGATGTCAGTCTTTAAAATTCCGAAGAAAATCTGC
AAAGGAATTACAGACGCGATATCTAGATTTTGGTGGGGTGATGATGCAACTAATAGAAA