morexGenes - Barley RNA-seq Database

Contig contig_48602
Source Contig contig_48602
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48602 (7862 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_48602

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64293	1	1373 bp	MLOC_64293.1	Available	Available	LOC_Os09g30010.1, FRAME:+1, EVALUE:2e-19, 13109.m02987 protein fasciclin domain containing protein, expressed
MLOC_64294	1	2006 bp	MLOC_64294.1	Available	Available	LOC_Os01g40420.1, FRAME:-2, EVALUE:0.0, 13101.m04139 protein CBS domain containing membrane protein, putative, expressed
CDS Structure of MLOC_64293

CDS Structure of MLOC_64294

Contig Sequence (7862 bp)

>contig_48602 7862 assembly3_WGSMorex_rbca.fasta
CCCATGCGATGTTCCCCAACATTAAGGTAGTAGTGTCACTTTCACTCCTTGATGCAAAAT
ACATATTGTGCATTCGGTGCATACTGAAATTTTTAAGAGAAAACTCAGGAGCATAGATGT
CCACTAGACTAGGGATGGAAGAAACAATTACATCACTCATCATGGATTCAATGTCCATTC
AAGAATTTGAAGAAAAGTGGCACAGAATGTTAAAGAAGTAAGAATGTGAAGAACTAGAAC
ACCTACAAAGAATGTGGGTTGTCAACACATGTTTGTGTCGACATATTTCAAAGATGATTT
ATGGCCTTTCACCGGATCACTATCTGGTACAAATATCCACACATGGACCCTTCAAACCAA
CCCTATACGCGTACAGGTTGTCCGACACCCCCAAAACCAAGACTATATGTGGGAAGAAAT
GGGGAGGCCCGATCATCGGACTAGAGGGAGGGGTGGATCCCAAATCTCTTCAAGACTTCC
TCGACTCAGCCCGGTGTGCCTTCTTCCTCCCCTCTTTCCTGCCTCGTGTGCACAACCATC
ATCGTAGCTCCACTGCCAACCTAGCTCAATCGTCGTCCCCGACCGATAACACCGCCACCG
TAGGCCCCAACCCACAACATCGCCATCTCGGCCGCCACCGGACGTCGCCTCGATATGTCA
AACTCCTCACGCATACTTATCCGCTTTATGTGTTCGATGAAATGTGTGAGCAATTTTTAT
TCTTTAGCGTGGATTCGTCGGATGATAAGTATGGGACCTTGATGGGTTCATATGCTAAGA
GTTCGTCGATTCTCAAAGTCGGACAACGAAGATGTTGAAACAATGACGATGATGAACGTC
CATGAAGAACTAGAGAAGCAAGATGAGCATGCTCTGAACTTCAAGGATTCGATAAAGGGC
ACGAGAGTTGTTCCTCGGGGATAAGACCGCTGGCACAAGGCCTCTCTACAAGGACCACTT
CAAATTGAACCTAAAATAACTTGAAGGGTTTTTTCTACTTGGTTCTGGATGAGCAATTTT
TTTTCTTGCACATATTGAATGTCGTGGACGAGATTGATGTCTACTTCAACCTAAGGAAGG
GTTCTTGCGAACAAATGAGTATGTCATGTGAATGTTGTGTTTGGACTCGATTACCTGAGA
GAATCAACACGACAACATATAGAAAAATTGTTGGTAATTGGAGCTTCAAGAGGTTTTCCA
ACTTATGCTCCATTCAGTTGATTTGGAACATTAGTAATGGAAGAACTGCTTGAAAGGTAT
GCGTGGGCAATATCAAGGTCACACCAAAAAGGCTACCATCATACGTGAAGCCTTGACATT
GAAGGACTTATGAATTTGGTATGCTTTCCTTGGCACACCTAGTTCTCACAATGACATTAA
TGTGTTTCAGTGATCTCCTTTGTTCATGAGACATTTTGATGGGGTGCTCTGGCGAGCAAC
TACTCCTTCAACAAGCATGACTGTAAAATGAGGTACTATCTTTTTGTGGTATCTATTTTT
AGTGGACGATGTTTGTCAAGACTACAAATACAAGAAGGTGCTAGGAAGGAAATGGATATG
ACATTCGGAGTGTTTCAAGCTCGTCGGGGTATTTTTATTGGAGATGCAATGTTATGAGAA
CGAGAGACATTTTGCCGACTGATGACACGTTTTGTAATCTTGTATAACATGATTGTGGAG
GATGAGGACGCTAAACCGAAATCCATTATTTCTGCTTGGATCAACTTAACACAAGGCGCT
AAATATCATTGCTCAAAGTAAAATCCACGGTAACTCACGCGTGCAACATACCAGGACGCG
TCAAATTTCACCGCACATGAAGCTTGGTGGAAAGTCCCAAGGCTTGGTAAGTCACCCTGC
TGCATCCTTGCAAAGTTGCCACCATCCATGGCCATGGGTGTACACTTTCCTCCCTCGGTC
AGCCATGGCCACAGCTTCTGTCACAAGACTCACAACGTCATAAAGCCCATCACCATTTCT
TGGCATACTACCAGCAAGGAGAAAATGGCAACCGGGGCGCTGCACATGGGCAGAGTCAAA
AACAGAAGTGCAATCAAGACCACCGGAACACGGGCCTTGAAAGCCAAAAACCCTTCTTCC
CCCACCCCCGTGCCGTGAGTGAGTCCCTGAAAGAACTCGGCCGAGCCAAAACACCAGTCG
AGAGAAACCCTGTCCACCATACCTCCATTATTCTTGGACGAGCAGGGGAATCAAGCACAA
TGCCGTCCGCCAGAGCCGTCGCCCTGCCCCCCTGCACCATACTGCTGCTCCTCCTGCTCG
TCCCCTGTGCCGAGGGACAACCGCCGGAGGCGACGCCGCCGAGGGGTTTGGCGATCGAGC
AGATCCTGTCCAAGAACGGGTGCGGCGCCTTCGCCGGCCTCGTCGCCGCCACGGCCGGCG
TGAGCCAGGTGCTCCGCGAGCAGAGCGAGGCGGGGCTCACGGTCTTCTGCCCGGGCGACG
ACGCGGTGGCGGCGTTCCTCCCGCGGTTCCGCAACCTCACCGCCGGCGGCCAGGCCTCGC
TTCTTCTGTACCACGGAGTGGCGGCGCGCTCCTCCGAGGTGGAGCTCAATTTGTACGAAA
GCCTCGGGGAAATCGCGGTGCGGACGCTCGATAGGGGGCGCTGGGGCGACGGCATGCTCA
CCATCTGCAGCTGCGAAGGCACCATGAGGCTCTCTTCGTCGCCGTCGTCGTTCGGAACGC
CGGACGAGGCCAGGGTCACCAACACGGTCGTCTACAACAACCGCCTCACGCTCCACCTCA
TCGACGCCGTGCTGGTTCCGGGAGCGCCGGCGGTGTTCGACTACTCGGAGAGCTTAGTGA
CCGCTTGCTTCATACTCGGGCTCGTCACGTTGTGAGTACTACTACTACTACTATTTCCTT
GAGTTGTTTGCCTCTTTTTCTATCCAGCAGATCTTTTTTTTAATGGTAGTCTCTGCATTA
GAATGGACGATGCTGATGCTTGAATTGCTTCTAGCTTTCCAAATCTTAGTTCTACAAGTT
AACTGTATCCATGTGTCGTCTGCAGAGTCTTGGGGTCGTGTGCACTTCGTGCCATTTGTT
CGTGACCGCTTGCGTGCCTCTCCTCCCCTCCATCGTCGTTCCCTCGCATTTCTGATTCAG
GTGCAAGCTTTCACGGTCGGATCTGCGTCCTTGATTCACGCAATGCTGTTCAGCAGAGCG
GGCAAAGGGCACGTTCAGTTCATGTATCCCATGGTCGTCATTTTGCACGGTGTAGGTCTG
TGACTTCTAAAACTAGCATCTCCTGTGCTTGCGTGTTCCCTAAATAATTGTAATTGGACG
AGCAAGTTTTTCTGTGTGTTAGTGTAGCTTTTTCTATCTGCATCCTTCTATACCTAAATA
ATTGTAGTTGGACTCTATGTGTATTAGTGTAGCTTTTTCTATCTGTATTAGTGTTCAGTT
GATTACTTTTGGAATTAGACTTCATGTGATGCAAGAAAATGTTATTGGCCATGAATTCTT
CTGTACCTAACTTAGTACAAAAATTGTATTGCTAGCTCAGGGATGAAAAGGAAAACCTGC
GACGCCTGCAAGCTTAAACTACTGTCATACATTAGACTACTTGATTGATAGATAGATCGA
GGAGGATACAGAGGTACACATGGTTGAGATTAGGCAAACTTTTGGTACGTTAACGTTTTT
ACAAATCACAGAATCGCCACTGCAGTGTTTGCACCAGGAAACAGGTGCGGATCAGCGAAG
TCGGGTACTCGGTACAGCAGCTGACAAACTAAAGTACACACTAACAGATCACTGAAATGC
CTTGTCACCCCCACACAGAATTTACTGTGTCAACACCACCACCTGAACGAACCAGTCCAA
CTACAAGACTTGCTCAGTGCTCACTAACCTTGTCTGTCATTTCGGCCGTCATGCACTCCC
GGGAGCAGCTCAGCTGTTCTCGACGGAAGAATCGACATCCGCTTTGTCCTCGAGCTTCTC
CATCGCTGAAACAAGATAGCTGTCGCAGAAGCCAGGGGGCTCGTGGATGAAGCAGGAGAT
CACGTCTCGCAGTGTCACAACACCGACCACCTCAAAGTCGCCATCCACCACGTATATCCG
GTGTGTTATCCTCGATCCGATGCTGTCAATCACGCTGCCCATAGAAGCATCAGGTGCACA
GGTGAGCGGCGGCTTCACCAGTACGTCACCCCCTGAATCAGTAAGAGTGGAGCCTAGAGC
CTTCATGAACTCCAAGACGGTAAGATGCCTATGTGGATCAAACATTTCATTAGACACATT
TCACAAAAACACACAGGGGAATAAATCATTTGGTTGGGTCGCTTCGTACCTGAAATCAGA
AAATAAGTCAGGCCTAAGCAACAGGAAGCGAATGTCCCTTATGCTCACACTACCGACAAG
TTTCCTATTGGGACCTTCTACTACGGGTACTCCGCCAATTTTGTTATCCTTCATGCACTT
GAAAGCTTCTAAGATTAGATCATCGCTGTTAACCGTAATAACCTGAAGAAAACACAAGAT
TGTAAATTTCTCAATAAACAAGGTTTTATAAGTTATAACACAGTGAAAGCCTATTTGAAG
TCCTACTTCAGATATTGCCGCCTGCAGATCCAAAACAATCGGGATAGCACAGAGGATTAA
ATCCTACACTACAAAGAGTTTAACTAAAGAGGCAGCGAGGTGAGACAAATAACCTCATCA
AGAGACATGAATGGAAGCCCCAAGTCTGAAAGAGGAAGTGCCGAAATATAGTCGAACCAA
TCCCTTCCTTTACACTGTTGAAGTCCTTTAACAACACCAGTCTGAGTAATGAAGTTCTTA
ATAACTGGCTTATCAGGTTCGATCACAGGGACATTCCTCAATCTATACTTGGAAAGCAAC
AGTAGTACAGCAAGCATTGAACTGTCAAGCGTAACTGGCACAAAAGGAGACCATGGGTAG
GATTCAACAATTGTTCGAACCTACGACAAAAGGATAAAGGATACAGGTTAGCACGGTCTA
CAAGAGAAGACACACATGCAATGCTAAATTAAAGGGCCTGGAGGAGATAACCAAATAAAC
CTTAGCAACAAATCGCAATGCAGCTGACATACCACAAAGCGAAGCAAGACGTGTATGAAT
TATGTCAAATTGGATGGCATAACCATCGCATTCAAAACTGTACAAAGACAACTAACAGCA
AAAGAATCGTGAAAACGACGCCAGACCCTCATTTCAAACAAAATCATGATGGTTAAAACC
CACATTTTAATACTTCACATAAATTAATTCATTACTTATATGCACAAATATACACCATTT
AGTTCCCAACCACCACGACATCCTTACCCAGTTACTTTCAGAGCCTTAGCACACAGATCT
GTGGAATGTGAGGATACCCCCAATCACGAACCGACTCTAACTGGAAAATATTAGCAAGTA
CTTTCTCAACCAGTCTATGAAAAAGAAACCGGACTAAGGTCCTGGTCTTTTCGGTCCGAT
TGCCAGCCCCATCTGATTTTGAATACTGAATTCTAACTCAAGTGTAGCCAAACTTTGGTT
TAGCCAAACAACCAAACATTAAGTCAATTACGTTGCTCTGGTGCATAGATTCAATGCTTG
ATCAACATAACAAAAAAAAGAGACTTCAAGATAGAGCAATTGTCATACTGTAGTCGATTT
GAAAGGTTCTTGCTGAAGCAGAACTTTGTAGAAATCTTCCCCTAAATGATCAGCAGCAGT
TACTCCATCCCTCGCAACACCCTTTTCAGCAGTTAACCCGCCAGCAACAGCGGCACCTAC
TGCAGCAGCAGTCAACCCAGCGACAGCTGCCGGGCCAGTTGCACCTAATGCAGCCACGCC
CACTGCACCAACAGCGCCTATTCCGACTCCTGCAGCAGTTGCTGATCCAGCTGACAGAGC
TACGGCCACGAGATCAGCATTATCTAGTACCCAAAGGATGATGGCTGAGTACTCTATGAT
GCCAAGATACCTCCCTTGCCAATCAGCCGGAGCCCCAGGTTCAGGGTTAAGCACTGGCGC
TGCCCTTATGTTGTGCTCAGATAATATTCTAACAGCATCAAGAACAGAAGTTTCTCCAGG
AATTTCAGTCACTACAGTATAGAGAGGACATCGGTCGTTACAAACAACACCACAACATAT
ATGTGACAAAATATAAGACAGAGTATACAGATTGAGTCGTTTCTTTTGCAGAAGTGCATA
TATACCTCGGCCACTAGGAACATCAGGAAACGATGCGACTGGGATCTGAGCAAAGGCAGC
GGTCAGCGACTCTTGCAAAGCCAGTGGGAGCTTCTTCTTGGACTGGATAGTGTCAAAGTA
GGCATCACAGCTGGGGAATTTCGCGTTTTCCTCAGGTCGAGCCATTTCTACAGCAAATTG
ATGAAGGATTTATTAAAGAGGAAAATTTTACCCAGAAGTCATCACCAAATAAGGAAGTGC
ATTACACACAGTGGGCGCACAGCATCTAGAAGAAGTTGTCTGGCAAATAATCATACTCGA
ACATAAGTATATTATTAGTAATTCTAACTGCAAGAAGTACGAGCACACGGTTTGGGCATC
TTCTGAATCAAAAGAAACTCTTATTACAGCACACAGCCCACGAGGCATAGGCATGTAGGT
GCAAGTACCTTCAACTGATCAGCCGAGCAAAATCAGAGCCTCCTGGTCTCAAGGCAGCAA
AAGGAATCCACTAAATTTTCACCCTACCGCGTAAAAACTAGCACGGCCGCATGCATGGAC
AAACGATTTTTTTACGAAAGACAGCACAGGGTTTGGGGAGCTTAGTTATCACCTTGGCTG
CGACTTGCGGGAGCGCCCGGCGAGAGAAGAGAAGCAGCCTCCAGGTGCAGGGCTGCGGCG
GGGGAGGAGGCGGGGGAGGCGGAATGGATCGGAAGCGCTGGTCTCGGAGGATCTATGGTC
TGGTTTTCTTGGCTCCCAATCCAGGGGGCGGGGGAGGGGGCGGTGGAGGAGGAGTCGAAT
ACGGCGAGAGATGGTGCGGTGCTCGCTTGCCAAGGGCACACTGGCACGTGTACACGGCAC
GGGGCCACGTCCCCGCACCACAACCCAGTGACCCACCCCCCACCTCCCTTGCTGTGCTGC
GCTGTTATTTGTAAAGATGAGAAACGAAAGTGCTTGTGCGAATCTTCTTTCTTTGATTGA
TCTGAGATATTTATACAAGGATTTGAGACGCGAGATGTAAAAGGCGTCTGTACAAAAAGG
CGTCCGTACGGACGGATGCGTCCGTACGACGTTTAGACTAATAACGGACTAATCACGTTC
TAATGACGGTTCGCTAATTGCGTTACAGTTTTAGTCGGTTCGCAACACTCCCCCTTGTAC
AACGCCGTCTTGAGTAATCCATTATAGAAAGCTCCTTGTATATTCATCAGTCAATTCTTG
AGATTCTCCCTCAAAAACCCGTGGGAAAAAATATGAAGAGAAATGTATAGATATGTTGTT
AAAACTCCTTAAAACCCAGTGGGAAAAGTGATAAGGAGAAAATGATACAACATATAGTGA
TTATTGTCTCTTGATAACTCATATGAGAAAAACCTTCAAAGAAGGAGAAAATTATTGTGA
GTTTTAGAGGACAATAAATATGCTTTAGACACTTTCCTTTAAAAACCTTCATAGGGGAAA
TAGAAAGTATAGCATATGATTTTAATGAAGATATTGCCTCATTAAAAACATTATGAGAGA
AAATTTCAAAGAAACTCATAATGAAAAGAGTGCAATGAGATGTTCTATGAAAAACTCCTT
TAAAACCTGGTAGGAAAAATATAAGGAGAAATATGATATGGCATGCATCAATGCTTGTAT
TTAATTGTCTCGTTAAAAACCTTTTATGAGAAACCTGTTGGAAAAACTCATAAAGGAAAA
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