Contig Data
morexGenes
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Map Locations of contig_48497 (6200 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_48497

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64204 1 1661 bp MLOC_64204.1 Available Available LOC_Os03g40270.1, FRAME:+1, EVALUE:0.0, 13103.m04360 protein alpha-1,4-glucan-protein synthase, putative, expressed





CDS Structure of MLOC_64204






Contig Sequence (6200 bp)

>contig_48497 6200 assembly3_WGSMorex_rbca.fasta
CGCGCGCGGACCACGCCCCCCCACGGAGCGCCCTCCGCCCCCCCGCCGTGCGCCCGGCGG
CAGACGGCCCGCCGCTCGCGGTTGACCGCGCCGAGCCAGCCGCTCCTTTCTCCCGCCAGC
ACTCCAGCGCCGCGATCCCGATCCGTCTTTCACGGCGCGCCACCGTCTGCTCACTGAACA
CTTCCACACCGCCGCCCGGACGCGTGGAGATCTGCGCAGGAAGCCCGCGCCGCGGCTTAT
ATAACGGCGCCTCCTCCTCCACATTCTCAGCGCCCATCACACCCCCTGCAGAGCCAGAAG
CCACACACGCCTTCCTCCTCCTCCTCTGCTCGCATCTGGGATCAGGGAGGAGAGATCCGA
GGCTTTTGGCCGGCCGGGGACGATGGCGCCGCTGCTCAAGGACGAGCTGGACATCGTCAT
CCCGACGATCCGGAACCTGGACTTCCTCGAGATGTGGCGGCCCTTCTTCCAGCCGTACCA
CCTCATCATCGTGCAGGACGGCGACCCCACGAGGACCGTCATGGTGCCTGAGGGCTTCGA
CTACGAGCTCTACAACCGCAACGACATCAACCGCATCCTCGGCCCCAAGGCCTCCTGCAT
CTCCTTCAAGGACTCCGCCTGCCGCTGCTTCGGCTACATGGTCTCCAAGAAGAAGTACGT
CTACACCATCGACGACGACTGCTTCGTGAGTGCCACCACCACCAGATCCATCTCTTTCTT
TTTCACTTCCGTTGTCATATCATATCAACTCTTCTTGGCCGGAGTTGACTGGTCTCCTGT
CCTGCGGTGGCATTGCAGGTCGCCAAGGACCCCACGGGGAAGGACATCGACGCGCTGGCC
AAGCACATCCAGAACCTGCTCTGCCCGTCCACGCCGCTCTTCTTCAACACCTTGTACGAC
CCATACCAGGAGGGCGCCGACTTCGTGCGCGGCTACCCGTTCAGCCTCCGGGAGGGCGTG
CCCACCGCCGTATCGCACGGCCTCTGGCTCAACATCCCCGACTACGACGCCCCCACGCAG
CTGGTCAAGCCGCGGGAGCGCAACGGCAGGTACGTCGACGCCGTCATGACCATCCCCAAG
GGATCCCTCTTCCCCATGTGCGGCATGAACCTCGCCTTCGACCGCGAGCTCATCGGCCCG
GCCATGTACTTCGGCCTCATGGGCGACGGCCAGCCCATCGGACGCTACGACGACATGTGG
GCCGGCTGGTGTGTTAAGGTAACCACACAAACACTGAAACACATCGTCTCTGATTTCTAC
TTTACCACTCAAGTGCCAGTACATTTCCTTTTACTGAAGAACTTGTCTGAATGTGTGTGC
AGGTGATCTGCGACCACCTTGGGCTCGGAGTCAAGACGGGGCTGCCCTACATCTGGCACA
GCAAGGCCAGCAACCCGTTCGTGAACCTGAAGAAGGAGTACAAGGGAATCTTCTGGCAGG
AGGACATCATCCCCTTCTTCCAGGCCGCGAAGCTGACCAAGGAGTGCGACACCGTGCAGA
AGTGCTACATCTCGCTCTCGCAGCAGGTCAAGGAGAAGCTCGGCAAGATCGACCCATACT
TCGTCAAGCTCGCCGACGCCATGGTCACCTGGATCGAGGCCTGGGACATGCTCAACTCCA
AGGACTCCAAGGAGGCCGACGCCAACGGCAGCAAGCCAAAGGGGAAGTAGATCGAGGGAG
AGAACCTTTTTTGCATTAGCATACTGAGCAGGCGGTGGGGCGGCGTATACCGGTAGCGAG
CGTGCTTCGTCAGTTCGTAGGTTCAGTGCGTGCATCAGGTATCCAGGTTCAGGCTGTTGT
GTACTACAAAACATTAGCTGCCGTTCTATCTTACGTTTACGTTAAGGGTCGCGTTAATTT
TCCCCTTCTTTAATTTCATTATTATCAAACCATGACGTTGTTTTATCAAGGTTTAGTACT
CCTACGGTTATACTTGTGGCTGCTAATGTTTCCGTGTAATCTTGTGTACACTGAAATGTG
AGAATAAAAGGTTGTTGAATAAACATTGCAACTGTCCGTGTGTATAGTAGTACTGTACTC
CTTCTGTCTGAATTTATTGGACCGGAAAGTCACCCATCAATGTACGTGTTTCTTCCGCTG
CATTGATTACCTCAAGAGACTGCGTCCATCTTCTCACTCTGTCGGTCACGCAGACAATAG
ATGCAATGGCATCGGGAAGCATGCCAATCAATGGTTTTTTGCCACGTGTCAATTGTAGTG
TTCAATAACTCCATGTTTCCCACCACATTTCGTACCATGTGCACCCAGCATTTACACCGG
ACCCGTTTGTGAAATCTATTACGTCTTAAATAATACATTCTATATCTAAATAATTCAAAT
TAAAAATCCTAAATTCATACTATTACATGTAACATAAACTATACTAAGCCTCTTCCAGCT
TCGCCGTGCCCGTGTCTGACGGCTGGCTGTGCCTTTCATAGTGTCGGTTTGGTTGCCGAC
GAGGTAAAGTAGGACATGGGACACTAGCGTCTCCCATGCCCTACTCTTCCTCGTCGGAGC
CCGTAACTCGGACGGTGCCAGTCGGCGTGAGGTTAATGACGGATCCTTCCTGGGAGAAGC
CGACGTCCACCACGACGCGATTGCGTCGACCGCAGTGCTATCCCCTACGAGGCGTCGGAG
AGTGTGACTCCGCCTTTCCAGCATCCGTTGCCGCGAGGGCCTCCGTCGCATCTTGTGCCC
GTTACCTCGTCAGGCGGGCACGCCGCGTCATGACATCGTCCGAGGTCGGCCATGCTTCGT
GCTCGGCGTGCCAATGGAGGGGTTGCGCTTCCGCCAAGGCGTTCGGACGCCACACGGACC
GCACTGCCTCCGGTGAGGCAGCAACGCCGGATCCAACCATTGGTTGCACGAACGCAATGG
ACTCCGGACGTTGCGTGCCCGATCGCTGTCGTTGTGCGGCCGCCTCCCGGGAGTGGCGGA
GCGCAAGCCGGATGACCATCTACTCCTCGGGGCCACGTGGGACGAGCTCGTCGTCGACGG
ATCTGGAGTTGAAAGAATAGGATCCGCTCGCAGCCATGGCGGATGTGAGATTGGGTGACG
AATGGGAGTGGAAGGGAGTGGACTGAAGTGACTAGGGTTTGGTCCGGCGAGCGGATGAGG
CGAATAAGTGTGGTAGATGCGGGCTAGTGCGGGCTAGGCGGGTGTGTCCGGACGCGCCCG
GCCTCCCCCATGTCTGTCATGGTTTTGTCACGACAGATGTCCTTGTGAGAGAACTTGAGT
GTGAGGCCATCGTCGCTGTGTGGCGACTCAAAGCGGTTCATCGAGAATGAGAGATGAGTT
TACCCAGGTTCGGCNNNNNNNNNNGAGGTAAAAGCCTACGTCATGCTATGTGTGTATTGG
TGATGAAATCGGTTACAAGGGAGCGGATTCGCTTGACCTAGCTATTGATTGATTGTAACT
TAACCCTATCAACCTTAGGGGCTTGCCTTTATTACACGTCAAGACCGGGGTTTTACAAGA
GACCGGGTCGTGCTATGAGTCGTAACCCAGCACACCTCTAACTCGCCTTGCCTTTCAAGA
AAGGATGTCTTGTGCCAACCGTCTACCTCATGGGCCTTGTCCCACCATCTTCGCAATCGA
GAGCCATCAGGCGGCTTACCGGAACAGGCCGCCTTGCACCTTTGGTCTTGTACGCCAAGG
CCCATCTTGAATACAGTCGTAAGCCGCCATAATCATGACTCGGCCCCATAGGGCGGGTTA
TATGACAGGGTAATATCCCTAACATTAGGCCCGAGATTGACTTGAATTTATTCATGTCAA
TATCCTTTACCTTAATCTTGGCGGCTTGTCTGTAATTTGTGTCTTCATCTCCCTCGAGGT
AGAAATGACGGCTTTACAAAACTTCAAAGATCTTTATAACTGCTTGCTCTGCTCATTGGT
GACATCACCCGCCTCAGAATCTGGGGACTCGATGATGTCATTGTAATGGCTCTTTGTACT
TATCCATTTAGCCCAAAAATCAAGGCGCCCCTCGCTCCGGAATTTACTACGCTTCCTTTA
TTCCCACGCCAGCCGTTTACACTTCAGCTTTTGGCCTTAAATACTCATCAGGGGCCCTTT
CATTTTTTACTTTTCCATCTCGTCTTCTTCCTCGCGCACGCCTCTGGTCGTTGCGTCATC
GCCTCCGCTGCCATTCCCCTTCGTCGGCCAACAGTGCCCCACGAACATGATGCCTCCTAA
CTTCATTGAAACGCGGCTAGTCGACTCCACCGCCTCAGCAACTCTTCCGGTAAGTTTCCC
CTTCATCCTTAGATCCGCATTAGGTTGAAGTTTGGTCGTTGTAGTTCGTCGATGTTTGTC
ATATATTTCTTCCATTAATATCAATCTTCGTCTATACTGGTGAGATTCTCCATAGTATTA
CGACGGTAGATTCAATTGTCCATCTTTCTCATAATGCTCCTTAAACTTCATTTGAAATCT
GTCAACAAGATCACTACCGTTTCCATACTTTGTTGTTTAGGGTTAGTAAATATTCCCCTT
TTTTGAACCATACACACATCCGTAATTTTGAACATTTCGGTAGAAACATGTTTGTCCCAT
ATTTAGCAGAAAAAATAGAAAACCTTGTCCATCTGTAACCCACCTTTACATCATGTCGGC
TCCTTAATACAACTGTAATCCACCAGCTTCTGTAAATCGCTTCCCCTTTGTGTGGCGACT
CATGTTAGGGCGACTTAGGTATTGTAGACTATGCTGTTACTGAAAACTAGAACCGCCCAA
ACTAGTTCCATCTTGAGCATCACACTTATCAAATAATTCGTTTTTCCTTTAAATAACCCG
TCGAATATGCTTTTGCAGCTTTGTTCTCCTGAATCTATCATCATGTCAAAACCCGTCTCA
TGCAACTGGGTGCCTTCACAAGTCTGTGATATTGTACTCCATCACTATGTGTCCTTTGGG
GCCTTGTCACCAAAAGAGGAAATTGGTTGGCGAGCCGTCGTTGGGGAGGAACGACCACAA
CCTGGTGAAGGAGAAGTAGTGGTTTTCGCACATCATCTTGAGCGGGGTTTTTCTCCTCCC
GGGTCAAAATTCTTTCAAGATGTTCTACACTTTTACAATCTCCACCCTCAAGACCTGGGT
CCTAATTCCATAACCAACTTGTGCCAATTCCAAGTATTTTATGAAGTGTACATGGGAATG
GAGCCCATTGTCCTTTTGTTCACAGAGTTCTTTTATCTTAACCGCCAAACAGAATTTGTT
GATGGGCCCTGTTTAGAACTTGGCGGGGCAACAATCTAGAGGCGAAGAGAATGTGGTTTT
CCTGCTACTATCTTGCCTAGTCATCCAAAAGGTTGGGGTAAGACTTGGTTCTATTGCAAG
AACACAACCCCGACCAATGAGAATCTCGTGCCGGGTTTCAAAGCAGAGCGTCTGCCAATG
AATTTTGAGCTGCCCGGCTCACTTACTCAAGAATAACGTGCCCAACTCGCCTTTGTATGG
CCCAAACTCACAACCTTTACAGTCAATGAGTTAACGAGAGTTGATCTGACCCGGTGTTGG
GTGGATTGGTGGATCATGCCTCTAAGTCACCATGGCGCCTTAATGTGTGAGTATGACGGC
GACTTGAACAATGCACAAAGCTTCAACAGTATCACCCTCGACTCAAACGAAGTAAAAAAA
AAGTTGTGAAGAAGTTGTTGGGTGAAAGAAAAAAAGTTTGTTGTAAAATTGGTCTGAAGT
CGTTCTATACTCAGAACCCGGCTCCTGTGGTAATAATCTTTGACTTCTCTTGCCTTGCTT
ATAACTTTCTTCACTGTTCAAAACTTGCTTTTCCTTGTCAATATTTCTGCAGGCACACTC
GCCATTTTAGAAAAGAAAATAGCACAAAGTTGCTGTCAAGAAAACCAAAGCTACCCCTAG
CAAGAAGAAGAAGAAGGTAGTTGAGGAGTCTTCAGTTATGGGTGAGTCACAAACCGTTGA
TGACCAATCTCAGGTAAAACCTTTACTTTAAAACTGACTTTATATGAAACTTGTTGGGGA
ACATTGCATGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTCTACGTACCCTTGTAGATCACAGAGCAGGAAGTGTTAAG
AAACGCGGNNNNNNNNNNNNNNNNNNNNNNNNNCCCTCGAACCGTCCCACAAACCGGCCC
GCGATTCGTCCCACGATTCG