morexGenes - Barley RNA-seq Database

Contig contig_48465
Source Contig contig_48465
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48465 (8105 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_48465

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64183	5	2777 bp	MLOC_64183.2	Available	Available	LOC_Os03g17240.1, FRAME:-3, EVALUE:0.0, 13103.m02060 protein ankyrin repeat-containing protein, putative, expressed
CDS Structure of MLOC_64183

Contig Sequence (8105 bp)

>contig_48465 8105 assembly3_WGSMorex_rbca.fasta
AGGTAGATCAACTCTGTACTTGCTACTCCACCATCAATATAAACAAGAGCAAGATGTAGG
ATTTTACCTCCATCAAGAGGCCCCGAACCTCGATAAACACCGTCTCCTTTGTCTCATGTT
ACCCATCGATCCAAGATCCACAGTTCGGGAGCCCCTACCCAAGATCCGTCAGTTTTGACA
CCCACACCTTTTCCAACCGAATGTAGTTCAATTAAACTTTGCTACTCCCTCCATTTTTAT
TTACAAGGCCACTATCAAAATTAAAATTTGCAGAAATACAAGGCCACTAACACTAATCAA
TGCAATATTAATGGTGTTTGCCTCATATTAAAGGAGGACATTAATTACACATTAATTATT
TCTTGTCTCATAGTACTAACAAAGGAGGACATTAATTATTTCTTGCATGCATGCAAGAGT
AAGATCATTGACTTGATGTGCATGAGAGAGAAAAATACACATTGATTTACACGGCAAACA
AGTAGACAAGTTGTCTTGCAACATTAACTTAGAAAAGATTAACTTTTGCCTTGATACGTG
TAATATAGGTTTGTGGCCTTGTATACAAAAATGAAGGGAGTATTATTAACCGTTAGATGA
GATTAATAATACACATCCTAGGTGTTAAAGTGTACATGTGAATTGCCTAGCCCTTTTCAG
TAGCTCGGAGTTTTGATTGTGCTGGCTAGTGCATGAAGCTTGACATGGTATCAGGGCTAA
TGTCTTGAGTTCAAGTCTTGACTTTCGTAATTTATTCATAAATTGTTGTTCCTCCTCTCT
GTCCACGTATAGACCTCTTAAGCCATACATGTAAGTCTATTCACGTGTTGACTTTCCACA
TCGGTGTTGAAGTGTATATGTGGATTGTCTATCCCCTTCCATCAATTTGAATTTTTATAA
CACTAGGAGGTAGTATGAAGTACCATAAAACTTCCTTTTTTAAATATTTTGCAAGTTTTA
GAAACCAAAATAAAATAAATACATGTTGAGCACAACACTATAAAGCTATAGATTTTTCAT
GGAAAAGTCGTTTTATTTATGAGCTACACAAAATAATATAAACGTTATACAGTTACAATG
ATTCATAAAGCAAATACTAGTGTTATTGCTTTTACCTTTTGCTTTCCTTCTATCCGGATA
ATACATAAAATTGGCGTACCATGTATTTGTAGAAGGCGATAAAAAGCTAAAGTTTTCTTT
CGCTGTAAAATTTAGCAGACATAAACTTTGTAACAAATGATTGTGCTCATTCTTAGCCAG
AAGAACTAAACTAAAAAAGAAGAGCGCAAGGATTTCATACGCTCTCCAAGGCACGGCCTA
TAACCCTTTATATGTGAATCTTTGCAAGATCCGTATATGCATAAAGCCCTAACCAAAGTG
TAAACCTTCAGCTGGATCGGTGGTGCCGCACCAACGTCCCAGCCTCCTCGGCCTCCTTGA
GCTTCCATCCGCCCCCATGAACTTAAGCACGAAGTAAAGAAAAGAAAGACCAGACCACAA
CAAGTGTAAAGTAAAGGCATCCTCTCTTTAGCATTCGCCCTTCAATGCTTTTTTCGCTCC
GTTGGTCCTGCGGGCTTTCTTGTTCCGGGCCTTTCTGAAATGTACGGCGTGTGGCAGCCA
CTGAAGGAGTTTCAACTTTCAATGCAGCAACTTAAGTGACCTTTCAACTTGCAGAGCTGA
TCAAAGTTAATCAAGTGGTGGCAGGGAGTGACCTGAGCAGACGACCGCGACCCCAGATCA
CAAGTCAAATGAGTTGAGACACCGCAGTTATGTGCTTGCAGGAAAACCACCTAATCTTGC
GTGACGTTTCTCCTCTACTCCACCCACCGGCTCTCAAGTCTCAAGCATGCGGTTTCACTC
TCACGAGCGACTCGCAAGGTCAAGCTTTCTTACTCCACGTCTTGATCGCCCTGTCTCTAT
TGCAGACGACTTGTTCGTGTTATACTGTTATCACCTATCACTACCACTCCGGGTATGTTC
CGTGGAAGAAAGCATGGAAAGATCTTACGGTTCTCACGTCTCCTGCCTTTTTATTATAGT
ATATCAAGGAGTCTGCCAAAATAAATACTTGCATCAGTCGAAGGTCTCACATTTTTTCCT
TTAAAAATGTGAACAGCCCTGGCCTCTGCATCAAACTATGCATACAAACATCTTTATTAT
ATTATTTAAAGAATCCGACAAAATAAATAAATGAATCATTCGAATGTCATCTTTTTATGT
CGCTACACCTACTAGCTTGACGATTTGCGCTGACCATGCATTAACTCGCATCATCTAATA
GCCGCTCACACGTAAACCGGGATCACCACCCGGTCTAGCAAACTCTCAAAGCATATCGCT
TGCGGACACTTTGAAATTCGCCGTCGTCATCTTCTGTTGTCCCAACTTCAGAAGAGATCA
ACGTATTGACCTCGCTAGGTCTAATTGTCGTCGACGCCACCTCGACACCAGACAACGCCA
TCGCTCTGCGCTCGTACATCAAGACACATACATTGTCGAGACTGTGCATGGTGTCGCCGA
GACCCACCGTCATGGACGCAGTAGATGCCACGTTGCTCCACCTCCTGACGACTCCAATTA
CCACCGTCATGGACGCAGTAGATGCCACATTGCTCCACCTCCTCGCAACTCCAGCAAGTA
ACTGCTCCAAAACGATGCCCTCAAAAAGAAGAACAACGTCGAAAGCATCATCGTCGTCCG
ATCCGGAAGCTTCAGGTCAAGGGTTTCCCCTCGTAGCGGCCCAAGCGAGGAGAAGATGAT
TGCAATGACCATGCCTTCAACAAAGTAACGGGGCATAGACACCGCCATCATCCAGCTCGG
TTTTCAACGGCATCCACTTCTCCCCAACTTGCAGCCGGCTGGATTGCCCCCTAAGTCGGG
CAGATCGGCTTTGCGCAACCATCATGCCACCACCAATGCTCAGCGTGGGATCCCAAGATC
CACCACCACCGAGCACGAACCGTCCGACCACCAGCGGAAGGAGGAGCTCGCCATCACAAG
TCCGATGCTGCTGCCCCAGTGCCGCCACACAACCAAATGTGCCGGTGCGCCGCCAGAGAG
CCGCAAAACATGCCAGCAAGGCGCAGCCCATGCGGCCATTGGGGCCAGATCAGGCCCGCG
CGCCGTGCAAAAAACAGAAGCTTCTAGATCCTTCTCAGCTATCAGATGAAATACAAGGTA
CAGAGTGCTAAGTACACATACCATTCTGCTACCACAGCATATTAACAAAAGGTAGAAAAA
AGAAGGCCGAGAGAAATTTTATGAAGGCCAGCCAGCCATGCATAGGGAGCACAGCACAGG
CTGCATGCATATTCTGATGATCACAATCTATCTGTAGAAGATGTATACAACACGACCGTG
TACCGTCTGCTCCTGGCTCCTGCCCATAGAGGAACACCAGCTTATTGGAATGTATACGGT
AAAACCCCATATACCCACAGCACCTGGAGGGTCAAAGCTGTTTATACTGAGTGCCATCCC
GCCATTCTTTTTACATCCGTGCCGTGTGGCACCGCCAAAAAGACCGAGGATCTATAGACC
GGAGAGATCACCTCATATGGCGTATATCCGGTCTATCTCGGAATCTGACTCCGAGTTGTG
GTTCCATGAGTTTGAGCCGCTCCGCCTTGTTGATTTCACCTTCTTCCTAATTGAACGTGT
GCGCTTGGACTTCACCACATAGTATGTCATCGTACCGAGCACGCCAGCCATGATCACCCC
ACCAATGAGGGTCACCAGAAGCGCCGCCCACCTGAAGTGCCGACCCACCACTATGTAAGA
GGAGGATATGAATGCCACCGTGGTGCATACCGAAGCCAGCCACATCAACTTGTTGATAAC
CTCCACAACTCGCCTCTCTGCTTTCGTCTCGCCCCTAACAAGTGTTATCTGGACCACCAC
TACTGCTAATGATGTGAACAAGGCGATGGCATTGAAGATGAAGAACACCTTGAAGGATAA
CGCATGCACAACGATTGCCACACCTTTCTCATCGTTACCACCTGGCACCGTGAATATCGC
AGCAAATGCAACTGTGGCGAAGAGCACAGCCACAACTGTGACAGAGTTTGTTGCATTGTT
GATGCCTTCCCTGTGGAGTTTCCTCAGCTCCTTTGCTATGCCATGAACATTTTTGTTAGT
TTTTCTGGCTTGCTCAAGTTGAGTGTGTACGTCCTTCTTGATCTCAGTCACTGTTTTTCT
CAGCTCATCCCGAGGCTGATTCAGATCATTTGCTCTCACTGCACCAGCACGGGATAAACA
ATCCTTTATATCCGCAGACTCCTCTGATAACGGAAGACCCTCTGCTATGTCGAATGCAGT
CTTGCGATCCCTAGTCAATGCATTCACATTCATGTCCGGAAGAAGCAGAAGCTCGTTCAC
AATCTGCAAGAGACACCGGTTTGTGAGACACAAGAAGAAAATTATTGCATTTGCACACAT
GATTTTTTTTAGATAAACTTGCACACATGATTTAACATGGCCGAATAATACCTCTGATCT
TTTCTTCCTGGTGGCAACATGCAAAGCTAAGTTGCCATTTTTATCAGGCAGCATAACTAT
GGCCGGATCAGCATTCACGAGTGCTCTAACAACGGCAGCACTTGTTCCTTTAACTGCCAT
ATGCAAAGCGGTCTGTCCTTTCTTATCAGTCTTCCGAGCAAGCTGAGCTTCACTGACTAG
CAAAGACTTGACTATTTCAACATGCCCTTGACGGGCAGCGAAGTGCAATGCATTCTTTCC
GTTCGCCTTTGATAGTTCAACCAACCCAGAAACTCGCTCCAGCAGAAGGTTCACTACCTC
GAGGTGGCCTCTAATCGCCGCAGTTATCAGAGGAGTCACATTTGATTGGCCAAACGTCTT
CCCAAGAGATGGATCATGGTCGAGGAGTACCTTCACAATATCTACAAGCAGTATCAGATG
TCCATCTTTCTTTATATATACCACAAAAATATAGAGTACAGATGAACAGCTTGAATGATG
GACTAATTCTTGCAGTTATCATACAGCAGGTCAATTTCAGAACTGCAAAACTAATAACAA
TAGGATCCATGGAGATTGATCAAAGAGTAGATTAAAAACACATAAAACCTTGGCTAGACC
CGTAAAACCATGGCGATCAGTCAAGTTTAGGAATCCATAAAACCCTCTCTTCATGCAAAC
TATGAGATTCTAGTCTAGACACAAACAAGGTCCAAATCAAAGCTTCCCTGTTCCCATGTA
AAGGAAGATGTGAACAATTAGAAGCGGTTTAGTATTGAAGTGTTTGTGAGTGCTCACCTC
TGTGGCCTTCCTTTGCAGCGACGTGCAGAGCATCGAATCCTGATTTGTTCTTCCTGGCAA
GGCTCTCCTTGTCAGAGTGGTTGAGCAGCTCGACGACGACGTCGATGAAGCCTTTCTCAG
CTGCGATGAGCAGCGCGGTCTCCCCGACCTCGTTGGGCTCGTTGAGCACGGCGGCGCGGA
TCTCCGCCACCTCGCTGTCGAACTCCTCCCCGGTGCCGGTCATCTGCGCGTCGATTTCGG
CGATGATCTGGCGCACGGCGTCGAGGTCCCCGCGCTGCGCGGCGAGGTGGAGCTCCGTGT
CGTTGTGCCGTCCCGTGACCTGCTTAACGTACTTCTTCCGGCCCGCCTGGTCCATCCGCT
TGCCGGAGTTGGAGAGCCCCAGCACGGGCGGCGCGGCGGCGCCGGCCTTAGGCGACGGGG
ACGGAGACGCGAGCGACTGCTCCAGGCGCTTGCTGGAGCCGGACATGACGAGCGCCGGGC
CCTTGGCCGGCGTCGGGGACGACGCCGGCGACTGGTCGAGGCGGTTGCTGGAGCGGGACA
TGGCCAGAGCCGGGCGGCCGGGCGGCTGGTCGAGGCGGTTGCTGGAGTGGGACATGAGGA
GCACCGGGCGCGAGGGCGACGGCGACTGGTCGAGGCGCTTCCCGGAGCTGGACATGACTA
GCGCGGGGCGCCTGGCCGCCCGCGACGGCGACGGCGACGGCGACTGGTCGAGGCGCTTCC
CGGAGAGGCAGGACTCGAGCGCCCGGCGGCCTGGGGCGGCGGGCGAAACCCCTCCTCCCT
CCGACCCCGGCGACGCCAACCCAATCTCCAAATCCCCCTCCCCTGCAGCCAAGACCCAAC
CAGCACGAGTAAGGATCGCTGCCCAAAGAAAAGAAAAGAAAAAGGGTCCGATCAAACCAG
ACCAGACCAGACCAGACCATAGGGATCAGTGGAGCAATACCTCTGTCGGAATCGACGGCC
ATGGCGGCGGCGGCGGCGGCGCCGGGGACGGGGACGGGGTCAGGAGGAGTCGGCGCGCAG
GGGGCGGGCGGGAGGCATGGGGCAGCGGAACGGGAGGTGGGGAGACGAATCAAATCGCGA
AGGGGACGGAAGCCCGGCGTCGCGGCCTTTTGGCTTTGGTGTTGTGTGTGATGAGATGAT
GGAATGAAATGAAATGAAATCAATCGGAGAAGCGGCTCGGCCTCCGTTTGCTTTCAGTTC
CCCCCCGTTTGGTCTGGACGTCTGGTGTGTGTTGTGTGTGGGTGTCCGGGTTTGTTTATG
TGGCTGGCGCCGGTTTGGTGCGCTGCGCCACCTGCCTGACTGGCTAGAGCATTTGCATAT
GGGGAGCTTTTGTCGCTTTCCATCACGAATTATTATCTCCTTCTGTGTTGCGCACAAGAC
CCTGTCGCCCCCAATAACTGAAAACTAGTAGTAGTACTAGTATTGCATATTGCAGCTTTA
AAGAAACCAAAACTGTATGTGCAGATACTCTTATTTGCCACTTTGTTTTCAGAAAACATA
AAAGACTACATGGTGATGGGATTTTACATGATTTATTTATGCGATTGCATGGAGAAGATG
CACACGGGAAACCGATGATTGAATCCACTAATCTTCCTCACGCGCTAGAAATCGCACACA
TCATGAATTTAAATCCAAACCAGTACCTTTGGTGCATACGGTAGGAAAATAATAGAAATA
GATAAGTCATATACACTATATCATTAACTTTTCTTAGAATTAGAGACCTTTCATTCAGTT
GAGTTCATCAATTTAAAATTGGATCATCGATTTTGAACGGGTCGACAATCTCTTACTTAA
TTTTAATTCACTATGCTCTTTTATTTTATTTTAAAATTAAATATTAGATTTCGTTCATGA
TTTTGATTGAGTCAATAATTTTCTAAATCAATTAAAAGCAACCGGTCTATAAAAAATTAA
CAATCCTAGCCACCCTCATCTAGGGAAAAAAACGTCTACATGTGCTAATCAATATAGTAC
ATGCATTCACTCATGCATAAAATTTTCCCGCGTAAGTATGAGTTGATGTGCAAAATCACA
CCGGGGAAGTCCACCAGAACACCTCACTATATGAATATGAAAAAGAAAAAACACGTCATC
ATCTTCCCCACTGTTCAAATCTAATACTCACTCTGTTCTAAAATCTAAGGTGCATTTGTT
TATGAAAAAGTCAACTTTTAAAAAACTTTGACCAATTTCAACGACAAAAATATCAACATC
CACAATACTAAATAATAAAATATAAAAAACATTTCATGATGAATCTAAGAATTTGATTTG
TTATTATGGATACCGATATGTTTCTACAAAGATCTGATCAAATAAAGGGACCGTTCTGAT
GTCCTCCAACTTCAAACTTCACAAAATCTATGCCAGAAACCAACCCGAACGCTACAGCTT
CAAGAAGCTAAGATTCTCGAAGTCATCCTAGACTACAGTGTATTTTTATGGAGCGAGGGC
AACTCGGCTTCTCGTTAGGGCATCTACAATGACTGATAAGATGGTTTTATCTTAAGTCTT
GCATGCAATTTAGAGATGACAAAAAAATGTCTTACAATGGATCACCTCTTAGCCTTATCT
TCAATAACTAGTTATTCCTAAGAATATGGTGAGACATACTGTGCTAAGATATCACCTCTT
GTTCTCTCTTAAATAAGAGAAGACAAACCTTTTCATAAGATGTCACTCCTAAGATAGTAC
CATTGTACATGCCCTTAGACAAGATCACATGAATCTAGAGTTGGACATTATTACGGTTGT
AATGTCACCGTCTAAGGCTGGTTGTAATGGATAGTATCATTTACTAGTATCATGCATATG
ATACT