morexGenes - Barley RNA-seq Database

Contig contig_48434
Source Contig contig_48434
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48434 (7814 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_48434

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64156	12	3428 bp	MLOC_64156.7	Available	Available	LOC_Os09g19734.1, FRAME:-1, EVALUE:0.0, 13109.m01855 protein isochorismate synthase 1, chloroplast precursor, putative, expressed
CDS Structure of MLOC_64156

Contig Sequence (7814 bp)

>contig_48434 7814 assembly3_WGSMorex_rbca.fasta
TGGCCTCACACCTAAGTCCTTGTACGANNNNNNNNNNNNNGACAAAACCACGACAGTTGG
CGCCAATCGTGGGGCTTAAACCCACGACCACAAGGTATTCCTCCGGTGTGAGTGAGTTAC
ATGATCTCATATAAATGAGTGATCTATGGCATTGCCCATCAGATGAAAATAATGCATTAG
GTACATTATGCTTGCAACAAGAAGCATCCAGATCATATAAGCAATTGAACAACCAGGCCG
GAGAAGAACTCAAAAGAATGGTAATATACACTTGCACTAAACTGGTTTGTTACAATCATT
GTACATAATTATCTAATATGCTTTTATTTAATCTTTTGTACGCTCCACGACTATCATCAC
TGTCATCTCCTCGAATCGATATTTTTGTGATTGCATCTTCAGGAGCCATGCAAATCAGGC
TGAAATCCTTTCAAGTTTACTACGCACACACACAAACCGACGAACTCCATTTAGAATCTT
CCCATCAAATCAAAACTTCCCTGTAGGAGTTCAAAATCAACACATCGGCGGTTCCAATGT
CAGATCAGAAACTGAAGTTGTGGACTTTCTATATAACTGAGATAACGTAATTTCCCACCT
CTTTCTAAGCATTGTAATCTCTGATGACTTATTAGTTACAGTTCAAATCAATGTCCCCAT
GTTTCCTGCCTCTTGGTAGAAAATATGATGTTCTTGATACTTCAACAACTTTGCAAACTG
AAAATAACCATAATACCTAATGTGTTAGCATTCCAAATAGAAGTCAGCAATAACAATCAT
GATGTTGGACAGAGACTACCTGAGATGCTTTGAGATCAAGCTCATCCCATTCAAAAGATG
GATTTGTACCTTCGACAATCCCGGCACCGGCATAAACTAAAGTGCTATATCCCTGGACAA
GACAGCTACGTGACTTATGCTTCTAAATTAGGATGAGTTAACAAGGAACAGGCTTACACA
AATATTGATGACATGTAGTTTTATTTACTTTTCCAAGTAGTGCTGATCTAATCCCAACAG
CAAACTCACTTTCAGCCCCACCAAACCAACCAACAGGTCCAGCATACATTCCACGGTCGA
AAATTTCTGCAACAACATCAGAAAATAGCATTCAGAGATAGCAATCAATATGTTGCATAG
TAAATACAAAACACATATAGCATATGTCAGTTTATAGGTGACATTTTAGCCAGAATAAAG
GCGCACACCATAATCTCGTATGAATTGGCGCGCTTCTTCAGTGGGCAAGCCACAAACAGC
TGGGCTTGGATGAAGAGCATTTAGGATGTCAAACTGCAATACCAGAACAAAGAATCAATA
GTTTATTATAGGAATGCTAGTCGATGTCTCCAATAATCCAAGACAAAAGAAAATTTAAAT
AATCCCTAATGTTTGAATCATAGATTACCTCGTCGTCCTCATTTCTTAATCTTGCAGCTA
ATTGAGCTGACAAATGTTGTACTCTTGGAAGTTTCCGAAGGGCCTTGCTGGGATTGACAA
CAACCTCATCACATATCATCTGCAGATCACATCAGATCCACTGGTTCAACAAAAATTGCA
GTAACCATAATTTGTTTTCGGAAAAGCATTACTGCTGAGTACCAAGAGCAAAGCAAACTA
TTTCAGGATCATATCTGAAATAGGACTGTGAAACTTAACTTGCCTCAAGCTTCTTCTTTA
TGTTTTCCCGTACTATAGTAAATTCAGTGTCCTCTTTGATGCTGTAAGAATTATTCAAAT
TACTGGCCCGTCGGTTTCCGTACAAGGTGCCGATATGACCGTAAAATTTCATAAATATGT
TAATCTTATGATTATGAACACAAAGAGGGGAAACAAACCTTAGAAGCAAATCCTGGCCAA
TTTTAAAATCATCGGCCCTTGTTTTCCCTCTTGCTCGCGTGCCGGCTAAAGCCTCGCTGG
AAATCTTCAAGTATTTCCGGTGAAATAGTTGCTCTGGCTATTCAGAATGTTTCGATAAAA
TTAGCAAATAGTTAGAACAGAGTTATTTAACAACGCTAGAGCAAAAATATAAAGATGAAC
AATGCACAAGGCATAAGTAAGACCTATTTCTAAAGTGGATTCTGACTACACATGATATGG
AGGAAGGTCAGGTATATCAGGATGAAAAGAAAGTGCATAGCAGAAGACATACACTATTTC
CAACAAATGCAGGAGCGTCAGGTGGCTGTATGCAGAACTGATAGGCATTCTGGCCCTCAA
CCTGTAAACAAAGGAGTCACGGAATGATCTTCTCGTAAACAACGAGGGGAGGGGGCAGCA
ATGCAGCATACCTTCAGACAAGCTAACAGCTCCAGAGGGTCGATGCAAGTATCAGTGATG
TACCTGCTGCACCTTGCCAGCACAACCTGCAGAAAATATTTCATTGGCAAGTTCAAAATA
TTTGGTGAACAAAAATGGAAAACAAGTATGTTCTTCACCAATTGGAAAATTCTAGCATTG
GCACGAATATCAGATTTGGAAGAGATTGGTTGAAGTAAACCACTCTCTACTCGCAAAAAG
ACGAGCAAGAAGAACTACTCGGGTAGTTTTTGTTTTGGCAGACAGTGACGTAATGAATGG
TTTACCTTGACTAATTCCGTTTGGCTCCCTTTGATCATCCGAAGAGCTTGAGTAACCGCA
AGATCCCAGGACGCCTTGGTGGGGACATGATTGAGATTTACGATGGCGGTTTGTAGGGTG
GACCTGTTCACCTTAACTGAACAGGGTGATATCTGCATACAAATTCAGATTAGCGGTTGC
TAACTTACTATCTTCCACATGATAAGATATACAGAATTAAAATGCCATGCCTCGTGCAAT
GTTGACTGGAGCTCGTCCACAGCGCTCTGCCATGTCCAAGAAAGCGAGTCGTCCCACGCG
ATCGTCGTCGCGAGAACCGAGCCCTCCTCGAGCTCACTGAACTCAACCTGCAAAATGCAG
TACATTTTTACATCACACACACTTGAAAGAAGCCAGTACACATGCACATTGCATTCATCA
TGCAGAATGAAATTGTCACCAGTCGCAGATCGACTTACTTGTGGAACAACGAAGTAGAAC
GCGCCATAATCCTCCCATTCGACCGAGGCGTCACTCGACGCATCGAAACGGATGGCGCCG
TACGCGCGGATCAGCGGGCAATCCCTTGGAAGAAATCTTCACGGAGAAAGAAGAGGAGGA
ACAGCATCGTGAACGCGCTCTCAGCTAAGCTTTATCATAATTCATTCGATTCCAAAAGGC
ATACTACTAGCTGATCGAGTAGGTAGTGAGTTTTTGCGTAGTACCTCTTGATGGCTCGCC
AGTCGCGGACGGAGAAGGCGTCCGTGCCGCGGAAGAAGACCGCCGACCCCAAGCCGGCGA
CGCTCACCGGCTGCTCCCACTGCTCCTTGTGGCCACCGTTGCCGTTGCTGCTGCCCACGG
CAATGGCCGGCGTGTCCGGCAGCGGCGCCCGGGCGGAGAAGAAGCAGCGGGGCAGGGAGC
TCTGCGTCTGCGCGTGCAGCCACTCGATGGCGTCCCCTCGCTGCCGAATCGGCACCTGCG
CGCGCATTTTATCCAGATACGATCAAACGCAGTTCCACACCACACACGCGCCATCGACGA
TGCGTATGATATATGCTTTGCTACCTCGAGGCGGATGATGCCGGAGGAGGACACCGGCGG
GTCGGCGTTGAGCGCGGCGACGGCGGCTCTGAGCTGTCCCACGGCCTCCTGCGGCGCCGA
CGCGGCCGGCAGGGCCCGCGTCTCGCGCGTGGTCACCGCGCCCTGGTCGCCGGCGTCGGC
CGTGCAGCCGTTCATGGACAGGGAGCACGACGGCCTGACCCACCTGCTCCCGTCGCGAGT
GAGGAGACCACGTACGAGCCCCTTGGACGCCGGGCGGGACGAGAGGAGGCGGCCGGAGGA
GTAGAGCGACGACGACGGCGCCATTGCTGACGCTGCGGCCGTGAGGACGGGGTATCGAGC
GAGACTGTAGTGCCCCACGTACGTTGTAGACGTTGATGCATGTTTCGTCATGACGGAAAA
GAGAAGAGATAAGAGACGATTCTCATCGGGATAAGTGGCAGAAACGTAAATCTCCTCTTC
CGCCACGTGGCCAGCAGATCAGCCGCACGTTCGCACCACACTTTCCGACGTGGCCAACCA
GTCAGCCGTTCTAGATGTCAGCCGTTTATATCGAGGGCTTAATTCAGCATCAATTTCTTC
TCCCAAAGTAGAGTAGGACTACCAGAGGAAGGTAAAAAAAATTGGGGGGGAATGGAAGAG
GCGAATGAATGCTGAATCAAGTTCAGGATTTTCAGAGCTTGAATTATTACTGCAAAGTGT
GGCTCAACGGACAGGCACTACACCGACCAAAGACAAAATTCCTCAGGAATGAAACACGGC
AGTTCTTCAAATCTAACAGACTGCGACAACGCGCCCAAGGCGTGTGAAGTATTTGTCAAA
TCGCCACGATTCCATCCGAAACCGAGGAACACCCCTGAGAGTTCAGAAAAGAGAGGGCTT
GATTTCGCCATCAAGGCTTGAGAGCAATCGCAATGCCGACCTTCGAGCTCTTCTCGATGG
CCTTGGTGTCCACCTCCGCCGAGATGGTGCAGAGCGACTTCGGCCTGAACTCGTGCTGGA
TCAGCGCGCTTGCCTTGCCAGAGTTGTTGATGCGAGCCTTCACGAGGGTGAGCGGGTCTA
GGGTATGCTGAGTGCCGAAGGTGAGGCTGTTCTCGTTGCTCGAGAAGCTGTGGGTCAGCT
CCGCCCCAACAGCTGTGCTGGACTTCTCCACAAAGTGGTAATAGGATGCGGTGAGGCTGT
CTCCCTTGTTGTTCCTGCAAGAATAATTCAATTTCAAATCGTTAGTGGGAACTAGCCAGC
GGTGCTCTGCAAGTTGACGTTAGTTTCTGGTTAACTGCATTAGCTCATATACATTTTGAT
TCTTCTGAGGAAGCTCAAACATACGAGAGAAATAAGACCAAGAGCTTGTTTAATTGGTTT
GGATTAAAGAATCTAACAGCTCACAATCTGTACTTCCAGGGGCACTGCTCAATATTAGCT
AGTTGAGAAAGGATACGTCTGATTTGAAGGAAAAAATAATAATAAAAGCACACAGCAACT
GCTTGCTAGATCAGTTTTATTTGTGGTTGCAATGATACAAGAGTTTGTTAGGAACATGTT
GCAACTACCAAGGCAAATGATAGATGACAGAGATTGAACTAATATAACACAAAAAGACCT
TGGAAAGTTATATTCTAGCTATTTGTATACTGTCTCAACTGAACAAAAACTTGCTAAGTG
AGATACAGCAAATTGTGAAGATTAACATCTACTCCCTCCATAAAGAAATATAGGAGTGTT
TAGATCACTACTTTAGTATCTCAACGCTCTTATATTTCTTTACAGAGGGAGTACCTATGC
AGATGTCACAAGGATTAAAAGCTAAGATTGGCAAAGTAATACTTGGAAGTCCAATTTACA
TAGCTAGATCTTGAAAACTCACAGGTTCAGGGATGCGATAAGATCTTGGTTAGTGTAGCT
AAACGCAGCATTGTATTTGGTGAAATTCTTGGTGGATGTATCAAGCGACACATCACCACC
AACAGCTAGAGCACTAGTTCCAAACGCAGCAGAGAGGTTGACTACAGGATTGGCAGTCAA
GCCAATGCTTGCATTAATACCAGCATAATCATGTAAGTACTGGAGCTCCACCTGCACACA
AAGAAATAATCAAACATGAGAAACAACCAATTAAGAAACCATTACATTCAGGGTTAGGGT
ACAACCTTTCCAGATTTCTGATCAGGAACAGCAAAGCTCAAGATGGTCTTCAGCCCTGGC
GCTGCAAGATCGTCAGCGGTAATTGTTGTAATGACCTGCCCAATAGAACGAACCAGTCAG
TACTAAAAGCTGGAAACACAGCAGAATAATTATAATGTTTGATGAGAGAGAGAGAGAGAC
ATACATTTGATGCCGAGTTTGCCTTCACATCTACGGTGATGTTCTTGTTCTTGATCTGTG
ATTGGATCTCACCGAGTATCAGATCAGCCTTCTTTGTACTGGTAGCAGTAATTGCCTGCA
TAGAGAAATCCAAAGGAAATGTTAAAGACAATAGAACTTATATCATACGCACCGCACCGT
TACCATAGCAGTGTCAAAATAACAACACTTGTCACAAGAAAAGTAATATCAAGAGAACGC
TAGGATATGTACAGCATTACATCAGTGACACTAGTAATCCCTCAGTTCCTAAATATACGT
CTTTTTAGAGATTCCACCAAGGACTACGTACAGATGTATATAGACATACTTTAGAGTATA
GGTTCACTCGTTTTGCTCCGTATGTAGTCCGTAGTNNNNNNNNNNNNNNNNNNNNNNNTT
AGGAACGGAGGGAGTATATATCACTGTAATGACATTTCACACAAAGATTCTGTTCTAAGA
ATGGGGTGGCATCCACAATAATGATAATTTGAAGGAATATATCATGTTTTGAAGAGATTG
ATGACAGCATAAATCCATTTGCATCAGACTCAAGATACATATCTTATTTTATTTTAGATG
AAAAAAATCAGAGCCCACACCTCCCCCAGCGCCACTAGAATAAGGAAACGCCCAGATAAT
AAAGTAGAATAGTTTTTGGAACATTGGATTAGTCCATTTCTTTTGGTCTAACGGATGACT
GTATTACCTGATCAACATTGACAGAAAAGCCCCCATACACAGCCCCAGAGAACGCAGTAC
AACAGTCGTTAAATACTGGTGTGCTTGTAATTTACTCACAAGATAGCTACCTCAACAAAA
CAGTAATGCAGCTATTGTTCTCCAGGCTCCAGCCCTGTGCTGATGACTTGGATGTCGAAA
TATGTGGTTCAAGCATCGAAATCTAACCAACCGATACATATTAAGTGTACTTTCTATAAC
AAGAAACTCCCTGGCGAATTCAGGATCATGACAAGGCTAGAATATTGAGTTCCATCCCAT
ACTCCGAAGTCCTAACCAACAGAATCAATTCTTCTATCAGCCAAACAAATGCAAAGCCAT
AAGCAGCAATACACCTTACCTAAATACCCTCGCGCTACCCAGAGGTCGTCAAACCACTAC
CCAGCAGCGATCACTCGGATCACATGGAACGACAATAAACCGCGCGACCAGATCAGGGAA
ACCTAATAATCTCCTAGAGCCCGGATCAGACCGCGTCTCTTTCACGCACGACGGGGCACG
CAACGGCACGACCTGAATGAATGAATAGACGAGATGTCGGGGGGCACTTACGGCGCCATT
GGCGGTGTAGGTGGTGAGGGTGAACTTGTGGTCGGTCTGGTAGTCCCTGTAGAGCAGATC
TGCAGCGAGCGAGCAGCATCAATCAGCGCATCTCACAGGGAGGAAGCTAGCTCGGAGGGG
GGAAAAATCCCACGAACGCGGGTAGAGCGGGAGGGACGGAGGGCCGGTCGCTCACCCTTG
GCCTTCTTGCCGATCCCGGAGTAGAGGCCTGGCCCGCCCATTTCCGCCGGTGAGCTGGGA
TGCGCCTGCGCCGCTGGAGCTGCGTGGGTTTGTGGAGGATGGGGGGAGGCGGCGGATAGG
TGGTGGGGGGGAGGGAGGAAGGGGGGGAGAGGAGAATAAAGGCGGAGAATTCTACGGCGC
ACCCGGCGATGGCGAGAGCGGCTGCGGCTGCGAGTGGGCCCTCATAAACCCTAGCTTAAT
GTTTTGTTTTTGTCACTAGTTAGCATGCACATGCAACGCACGACTAACCGAATAATTTAT
AAATTACTTTTTATATTAAAATTTTAGTATATATATATAGCTGCAAAAATATTGAAACAC
ACACAATATACACA