Contig Data
morexGenes
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Map Locations of contig_48430 (6383 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_48430

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64150 2 1516 bp MLOC_64150.1 Available Available LOC_Os03g40710.1, FRAME:-2, EVALUE:2e-54, 13103.m04396 protein ZOS3-13 - C2H2 zinc finger protein
MLOC_64149 1 1677 bp MLOC_64149.1 Available Available LOC_Os03g40700.1, FRAME:+3, EVALUE:4e-114, 13103.m04395 protein presenilin, putative, expressed





CDS Structure of MLOC_64150






CDS Structure of MLOC_64149






Contig Sequence (6383 bp)

>contig_48430 6383 assembly3_WGSMorex_rbca.fasta
ACGTGAACATCGCGACCATCATCAACGAGGGTGGGAGAGAAAGTTAAGTGGTAACATGAT
GAGTCACCATGTTAAAAACAAAGGATGCTCATATGTGAGGGTATTGAATCAATCCTTAAA
AAAATGTTACACTTATTTGGCTAGCGTATAATGTATAATTATCCCGTTGCAACGCACGGG
CATATTTGCTAGTAATGATCATGACTGTAGGTGCAAAAACTCTTTTTTTTATCACATAGG
TGCAAAAACTTGGTTAAACCTGCAGAGACTATTTTAGTCTGGACTTCTGGTCTTTCGGGG
ACCCACGGCGCCAGTGAGTCAAAACTCCCAAAAGGCCTCCTCCTCTCTTACAACAACAGT
CGAACCCCACGGCCCAAACGATCCCCATCTCCTCCCCGAGAAGATATGGCGGACGAGGGC
CCAGCCCCCGCGGCCGCGGCCGCCGTCCCCGTCGGCCGGGCGGCCGCCACCATACTCGAC
TCCCTCGGCGAGGACATCACCCGCATCGTCGGCCCGGTCTCCGCATGCATGCTCATCGTC
GTCCTCCTCGTCTCCCTGCTCTCCTCCCCCTCGTCCCCGTCCCCGCTCACCGCCTCCATC
GCCGCCGCCGCCGGCCCCGGCGGGGGCGGAGGCGACGACATCGCCAGCGCCGCCGTCACC
GCCGTCACCTTCGTCGCCATCGTCACGGCCGCCACCTTCTTCATGGCGCTGCTCTTCTAC
TTCCGCTGCACGCCCTGCCTCCGCGCCTACCTCGGCCTCTCCGCGATCTGGATCCTCCTG
CTCCTCGGCGGCCAGATGTGCCTCCTCCTCCTCTCCCGCCTCCGCCTCCCGCTCGACGTC
GTCTCCTGCGCGCTGCTCCTCCCCAACGCGGCCGCGGCGCTCGCGGTCGCCGCGATCTCG
CCGGCCTCCGTCCCCATCGCGCTCCACCAGGCGGCGCTCCTCGCCATCGCCGTGCTCACC
GCCTTCTGGTTCACGCTGCTCCCCGAGTGGACCACCTGGGCGCTGCTCGTGGCCATGGCC
GTCTACGACCTCGGCGCCGTCCTCATCCCCGGTGGCCCCCTGAGGGTTCTTCTCGAGCTG
GCCATTGAGAGGAACGAGGAGATACCGGCGCTGGTCTACGGGGCAAGGCCGGTGGATCCC
AGGCACGGCCACAATTGGCGGCTTTGGAGGGAGAGGGGGCAGCAGCTCGGCGGGGATTTG
GACCCCAGCTCCACAGTTGAGGTGATTGGTGAGGTTTTGGGGAGAAATCCTCTTCCCAGT
TCAGGTGGCAATTCACCCAATTCGGCGAGCCAAGCTGGGGAGCAGACGAACTTGACTGGT
GCTGTTAGCAATTCAAGGCTCAGGGAGTCACAGGTGCCGGATTTGAGCTCTGGTTCTGCC
AATGCACAAGCCAGAGAGGCGCTTGCATTGCCGGAGACTAGGCTGGATATTGCTGAACTG
AGGGTACCGTTGATCCAGCCACAGCCAGATAGAACCAGCTACGATGATGACGACGACGAT
GACACCGATGAAGATGGCATTGGGTTGGCCTCATCAGGGGCAATCAAGCTTGGGCTGGGA
GACTTCATATTCTACAGCGTGCTCGTCGGGAGGGCGGCTATGTACGACTACATGACAGTC
TACGCTTGCTACCTTGCCATCATTGCGGGGCTCGGCATCACTCTGCTACTGCTGGCATTC
TACCGCAAGGCATTGCCCGCACTACCGGTGTCCATCTCCCTCGGCGTTCTGTTTTACGTG
CTCACAAGAACATTGCTCGAGGCATTTGTTATGCAGTGCTCCACAAACTTTCTGATGTTT
TAGCATTCCATGTTTGTATGTCATTACAGTTCACAATCAAGGCTTTCTCCAGTTGGTTAG
GCTGTAGTATTTGGGGAACTGTTTGTCCTGGTCAGGCCATGTTTGTGAAACTGTTAATCT
GATGACTTACACGACATGTTGATATATGTACGGGCTCTTTGCCATTACTGTCAAAAAAAT
TACAGTATTGATTCTGAAGAAGGTACTCCTACTTTTGTTTTGAACCTCCTATTGCACAAT
CTGCAGTCTTGAATGCTTGCTGTAATTTTTCTGAAATCATATGGTGTATGCTATAAGTTT
TTAGCTCAGAAAAGAACACCAGACCGCAATAGAGACGAATTAGTCTAAAAATTCCTTGGA
TTTTGAGGTTCATATGCACCTTTCGAAGGCACTATGCTGAGTCTCTCAACAGGGAAGAAC
TTGTAAGATGATAGCACTTGATATTTGTTGCTCAGGGCCACTCACTGTCTTCTTTGTTTT
TTAGAACAGAAAGTAAATTATTCTGTTCACCTTAATTTCCATGTTACCATTTTCTTCAGG
ATTTAAAGAAAGAAAAGTAAGTCTGCGCAGAACCCTAACCTTTAGAGGACTCGTAAAACA
AAGTCATACTTTTCGAAAATGTTTCACACAACCAATTACCTGAGCAACCAAATCGATGAC
ATTAGCTCTCAACATCTGGACAACAGGTTGTTCAAAAAAAAAAAGTTGTTCAAAAAAACA
TCTGGGCAACAGCTAATGACCTCCGGAGTTGAAGAAACAGGAGCCTTCATCAGAAATAAA
TAAATATATCGAGGGCTTAGGTAGGCCACTTTGAAACATAAGACTGCTATAATGCTGATA
CGATATCGGAAAGCATTATCTGCATGATTCATTGACCGTATTTGTTCATCAGAAAGGTGC
TGCTGGATATAAGTAATAGACTACAAATCATTTCAACAGAAAGGTACTTCCTGGTAATAA
GAGCAGACTACAAGTCATTGATTGCATGAACTGGTTATATCCGCAACATTCCATGCATTG
AGATTTCTGTAATTCGGTTTCGGTCATGTGGAAAGTATCTGTCTGAAATGAAGAGAACAC
ACAAGAAAGATCAAAACACATTCTGAAAAATGCCAGGAAACTGAAGAGTTGAATCTTCAC
AGCCTAAACATACAGTATGATACTACATACTGATCAAAGCTAGAGCTGAGCGATAAGCTG
CTTTGAAACACGATCAGGCGAACCAATTTGGAAGCCATATCAAGCTGAGCCAAAGCGAAA
ATAGGAAATTAGAATGAGCTGAACAAATTTGGAGATCATAGCAGTTGCCACAGAGTCTTG
GAGACACAAGTTTAAAATGAAATTGAATTGCTGCAACCTGGACGACACTGCTCTCTACTA
GGGAATAACCAATCTAGAAACTAATGCCCTGATTGTTAATGGGTACATTGCAATGTTTGG
GAACCAAAAAAGGCAGTGCAACATGTAAGAAAACTGCCAAATCCAAAAGACAGAGTTGTC
CATAACGATTGTACATACTACAGAGACAATTCCTGGTATCATACTCTTTGGCTATCGATT
GCCTAGCAAAAAAAATGTGGATTTGCTACAAGACTTATGAAGAAACTGTAACCACTTTCA
GATAACACCCAGCATTCGTTCATCCCAAAGGCTGCTTGCGACCAACAGTTGGTTCGGTTC
AGGCTTTGGTCTTGCGGTGTTGCAATTCCATATGCTGGGAGATGGCAGGTTGAGAACGAG
CGACCGGTGATCTGGTGGAACCAGCTCTTCACAAGGTTGAGTCGCTTCAGATTTGGTAAC
AGTTGGAGCTCTACCATGATCAGCAAAACTGTGACGCTTTCTGTGGCCTCCCAATGCCCG
ACCAGACGTGAAGACCTGCCCACAAATCTTGCATTCGTAGTTAGCTGTTGCCTTCAACAC
CTTTGATAGGCTGACAAACTTCACTTCCTCATAAGAGCTAGAAGGCTCTGGCTCCATCAA
CTCATTGTCTCCAACTGGGCCATGATGATCAGGAGAAGTCAGCCCCATCTCTGTCATGAG
TGCATCGAACGCCACGTCGTCCATCTCACCACCTTCACCACAATCAACAAAAGCTGGGCA
CATGCCATGATCTCCTGAAAGCATCACAAGAATGCACGCGGCATCGACCTCCTCCATCCC
ATACGCCTCCATCACAGGGGATGGAACAGTGTCCAGAACCATCCTCCTCGACCTCTTCTT
CCTCATCACTGGAGCAGCAGGTACAGGAACATTGAGATCATCACCATCACCTACTGCTGC
CTGGTGCTCCACAGCCATCTTCCGGCGGCGCTTGTGCGTCCTCATGTGCATGGACAGGGC
ATCAGGGGACGCAAAAGACCTGAAGCACAGCTGGCATTCAGTCTTGGGGAACAACGCCCA
TCGATCGTCGTCGCTGGAAACGGAATCCAGCAGCCACGACGTCTTCTGGCACCGCTCCCG
GAGGCCGTACCTCTCGCCGTCGATGCTCGGCGTGCGACTCGGCTGTTTCTTGCGCCTGTT
CCTGTGGACCGCCATGTGGCCTCCAAGCGAGGCCCCGGAAGGGAAGCTCCTCTTGCAGTG
CTTGCACCAGTGCTTCCTCCCCCTCGGTGGCATGTCTGGACATATAGCAGCAGTAGTTTA
GTACCAAGAGTTGACAGAAAAAGATGATAGCAACAACAAATCAGATGGTGCCTATCAACT
CATAGATATGGGATCCTTCCAAAAGGGGGTTCTTTTATGGCGGCGGAAACAGAACTTGGG
AGGTGGAAAAAACCCTTTCCTTCCCGTCTTGAAACTCAACTCGACCTTATCTTGCGCAAT
CGGCAGAAAAAAGTGCCAGAAACCCTGATTCCTCTGTTCCACCGAGAAATGGGGAAAAAA
ATGTTTGGATTCTTGAGGGAAGACGAGAATTAACTAGCCGCCTGGGAACAATCAAGAGCG
CCAAATGGAGGAGTTTGGGAGGGGTAGAGAGTCGAATCGCCTAAGAATTCAAACTTCATC
CGAGACGACGGCTAGGGTTCCGGCAGATTCTTGACGGAAGCCAGCAACTTTTACAGGGAG
CGGACGAATCAAGAACTCGAAAATACCACAACTGATTCAAAAGAAAAAAAAGGAAGAGAG
AAACCCACCTCCGGTATCCTCGGTTCTTGGGCGGTGGGGGAGGAAGAGGGAGGTTCTTGC
TTGGCACGTCGGCGGTGGGGGGAAGGGGAAGGGGGGCGGCTTGCTGTGAATCTGTGCCGT
GCGTGTAATGCGCCGCGGCGGTGTTGTTGCTGACGAGACGAGTTGCCGGTTTTGGGAGGG
AGGAGAGGCGTGGGCAGCCGCCGGGGCCTACTTTTTCTTTCTTTCCTTGCCTGTTTTGTT
TGAGATGGGTGGGGGGAGGAGGGATGCTTGCTTTGCTTTTCTTTTCGAGCTGGGGGTGGG
CGGGGTGTAGCTCGTTTTTTGCTGGAGGCAGAGCAGTCCTCCTGGGCTGGGGCAGGACCA
CACGCACAACTTGGCTTGATTGGTTGAACCCTTTTTCATTTCAAATTTGCTACTCTTTCT
GTTTACTTTTGTACTCCATCCGTTCCTAAATAAAAGACATTTTCAGAATTCTATTATAAA
CTATATACAGATGTATATAGATATATTATAGAGTACTAGTAAAAATGTCCGTACGTTGCA
CTGGAAGAAAAAAAGAGCATCACATCCCATAGCCTATAACACGAGTAATTGTTTGATTTA
TGACCCACATTAACAATTCTTAACATGAAGAATTATGCTGTCGGCCTCGTCACCTTTGTA
AAATGGCTAAAAAAAGTTTGCATTGTTTGGTTTGGGGCATTATTATTTTATTCTCACCTC
AACCTATTTGTAGGGTACTCCATTCAGTTAAGATATGTCCTGCTTAATAAGACATATCTT
AATTTAATAGAAAAATGGTCTTAAAAATGACATATTTTTTGGGTTCAAAAAATGTCATTC
ATGAAAAAAGTTGGTGTGCATTGCAATAGGGAAAACATCTCACTTTCCCATAGTTATTCT
CTTTAGAGGTTCATGTTGTGGATTGCAGATTAAGCAATCTTATGTTCCTTGTCATATATG
TATACTGAATGATGGACATGTTCACGTGTTGTAAGAAATTTTCCAATGAAATTGATTGTA
AGATACATAAGGATCCACTTTATGAAAATTCTATTATATTTCAAAAGCTTGTAATCTTCT
TCTGTGCTAATAAAACTTACTCCTTCAACTCACTCTAAATAAACTGGATTATTCGTAGTA
AGTTGTTGATGTTCAAAAATCCTACATAAAAGTCTCAACGAAGACTACATCTTTCTTAGA
CCCTTCTTACTTGGCTCGACAACCCACCAGCGCCTACAACTCGACACATACCGGCGCTCG
GTAACACACGTCGAGGCTCCTACAAGCAGTACACACGGGAGGGTTTTATAGTCAGGTACA
CACACCAGCACACGCACGCACACATGACCTGGCCACCACAACGCCCACTGACCCATGCAT
GCATGCATCACACCCAGCCACTAACTACGACGGGTTTTGTAGCTAACGGGGCGTAGCTCC
CACGCGATCAGCCTCCGCTGCCC