morexGenes - Barley RNA-seq Database

Contig contig_48399

Source Contig contig_48399

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_48399 (3732 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_48399

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64127	4	2110 bp	MLOC_64127.2	Available	Available	LOC_Os06g06080.1, FRAME:+1, EVALUE:2e-20, 13106.m00616 protein serine esterase family protein, putative, expressed
MLOC_64128	1	266 bp	AK372941	Not available	Available	None
MLOC_64129	1	424 bp	MLOC_64129.1	Available	Available	None

CDS Structure of MLOC_64127

CDS Structure of MLOC_64128

CDS Structure of MLOC_64129

Contig Sequence (3732 bp)

>contig_48399 3732 assembly3_WGSMorex_rbca.fasta
TGGCGCGCGTGGAGGCGACGGCCGACAGACTAGCCGCCCCATGGGCATCGGAATGCCAGG
CCTCCGAGAAGGCCTCGTCGGCATGGGTCCCGAGCCAGACGGACAGCATGATCTCCCCGC
GCTGGAGCTTCTCCCCGCGCTTGCCGTCGAGCCTGTACCACTGGGGCGCCAGCGGGGAGT
CCTGCGGCACGCGGACCAGCACCTCGGAGAGGTCGAACACCATGTGGCCGACGAGGTCGT
CGCCGCCGGCAAGATCCTTGGCCTTGAGGGCGACCTCGAGCAGATGCGACTGGAGGTGCG
TGGCGAAGAAGGCGAAGACCTGGTGCCAGGAAGGGGTGTGGTTGCCGGGCAGGACGACGG
TGCTGCCCTTGAAGTTGCCGAGCGGACTCCCCAGGGGCATATTGGTCCCAGGTGGACGAC
GCGGACACAAACGACCAGAAAAAAAAACAGAGAAATAAAAATGACAGGATTTTTTATTAA
TATGCATTAAACATTTTTTTTTAAGTACTCATGATTTTTAAACCTAGCCGCTCTACTGCA
GCGAATATGAATCACTTAATGTAGCGAACTAGAATAAGTTACTGCAGCGATATTTTTTGT
TTGATAAAAGTGTGCTTTTTTAAAGTGTACATTTTTTGAAAAGCTAAAAAAAACAGGGGC
TCAGACCGACGGCGACGCCGTATCCCACCGCCACCAGCACGCCGAAACCGCCGCGTCATC
CGCACGCGCGTCAGTCTCTCGTCGGCCGCCGCACTCCCTCGATTCGCGCCGTCGGTGCGC
GCGGGATGGCGCCCGCGCTTTGTTCTCCACTTCTCCCTGCCGCTACCACCACCACCACCA
CCACTCATATCTCTGCCTCTCCAGCCACGCCCGTCCCCGGAGCGGCGCCGTCGGCCCACC
AGGTACGTTCCGCTCTCACGATCCGTTTCACATAGCTCCATCTCGGCTCCTGCCGTAGCG
TTGCCACGGCGTTGGTTGGAATTTGGGGTCGTGGTTAGGGTGTGCTGCCGGCACTGAAAT
CTGCAATTTGTTACTCGTCCAACTGTCCAAGCGACTCCGATGCCTGTTGTGCATGAGCGC
AGAGATCAGGGATTGGATTATTTTACTATAGATCAAATGACATCCGAATGTGCCTGGAAT
TTGTTTTTGCTGAACCAGGAATGCACCAGGAATACATACAGCATCTCTGCTCTGCCTATG
GAAAAGGTGGTGTGTCTGAATTCTTACATGTCGCTCAAATGGCATTCGTTAGCAACCGTC
AACATATATAGGGACCCAACCCAGTTTCGGAGATGGTGGTGTGCCAACTTCGATTCACTT
TGTCTGAATGAATGAAGTCTAGATGTTGGGAGCCTATTAATTGTAGGACAAGTCTTGCAC
TAAACATATTTACTCCTCACTGTTTAGTGAAGTGTGCCACTGTTTTGTGTTTATGCAGGA
TTGAACACCACTAAATCCTTCTTTCCCACCCAATGTCAATCGGTAGGGGCTGTCCCGCGT
GGCGTTCCTCCATGGAAGCATCCAACAGCAACCAAGGACCAGACCATCTCATTGTTCTGG
TTCATGGTATCATGGCAAGGTAACAGCCAAGCATTGTAGTTCCACCATAGCAGTTCATAA
AAATAGGATGAGCTGCATATTAAAAACACATTAATTCCCCGCGGCTCTTTCTCAGGAGCT
TAACTTCATTGTTATTGGCTACATGTTTCCTTTCGACTTGGCCTGAATTTTGGCTTGACT
GGTATGAAATTACAATTCAGAACAACCCCATTGCTCATTGATGGTAATGCTATTGCCGGC
TGCTCTCTTTGATTTACCTTTTTCATGAATTTTAAGATGCACCCTAACTTTTCAAAGTGT
ATATGTGAACTTCGATGAGTGAATCGCATGGCATACATCTGTACTCAACTGTCAATACTC
AAAATACGCACCTGTATTTGTAAAAATAAATAGTTAAAGCTTTGAAAAATGCTAAAGGTA
TATTTATGTTTGATACAGTTTATTCAACAACTCTTTAGTCAAGCTGTACTTATTGGCATT
TCTACTGATGATTTTCCCTTCTTCTTCTTTGAATATAGCCCCAGTGACTGGATATATGGG
GACACAGTGCTGAAAAGGAGGCTAGGTGATGATTTCTTCATCAATGGTATGTGTGTATTT
TAACTCTACATTCATATAGCAACTTCAAGTCAAATATCACAAACTACTACCTAATCATCC
TTTTTTTTTTTTTTGCTTCTGAGTATAAGGATTTTTAGGAACATGATGTGCAGAAATGGA
ATTGTATGCACAGACGCACACATAAAAATTGTAGTTAAGAGATGAAATTGGCACCGACTG
CATTACTGCAGCATGCAGAGGTTTGCAGTTGACAAAAAATTTATCAGCCATAAAAGAGCA
AACTTTTTCTTTGCAGCTAGTTCATCAAACATCGACGCTAAAACTTTTGACGGGATCGAT
GTAGCTGGAAGGAGGTTAGCGAAAGAAGTATATGTGGTAGAGACTATTCTCTGTTGTTCA
TGTATATATTGACTGCTTAGGAAGCTTACATAATAATGCCCTATGGAAAGAAGGTCTTGG
ACGTGGTTCAGAAGATGCCCAGCTTGAACAAGATTTCCTTCATAGTACATTCTTTGGGTG
GTGTGTTTGCTAGATATGCTATTTCTATACTATATTCACTGCAAGCAAAAGAAACGGGAA
GCGGTGTTGGTGTCATGCCGACAGTTAGAGGATCTGAAATGTCACACACTTCAGGAATAG
TGTCTTTCAATGGTAACAAATCATCGAAGGCATGAAACGAATTTGTGTCTTTATTAAACA
GGGCATCTCTGTGTGTGTGTGTGTGTGTGTCTGAACAATGCATCTCTCTTTTTATGCATA
TGTAATCACGTTAGATAGATCGATTATGCCACCAGATCCGTTCTTACCGCCAAACAACTC
AGTTGCTAGCGGACTGATTTACAGGTTAACTATTGCCCAGAGACGGGTGATGCATCGTGA
ATCGGGTTAAAAACTCAAAAGTAGTGCTCTAATCCATCGAGGTTAAGGCAAGCATCATGC
ACTTTTAGGCGTGCGGACAAGCGCTGCAAGCCCCAATGCCTGCTTGCACGTTACTTGATT
CTTTGATTGATTCCATGAACCTTTTGGGAGCAACACAACACACGCGATGAAGCCAAATTA
ACACACGCGCATTGGGTGAACGGCCTCACGTGTCGTACACGCATAACCACGTACGTGCAC
GTGACGACTAACAGCTTTAGACTCGATGCATGCATCGGCGTGTTTGAAATCACCCAAACG
AGTAGAGTGTTGAGTGACTGCAAATCGTATCCAGAGAGTATAGTAGAGTACTTGCTGCTT
CTTTTCTTGGTGAGTACTTGCTGCTTCTTTTCTTGGTCTCTGGATCTCTGCGGCGACTAC
GGTGGCCTTTTCCCAATCTGCGATGCCGACAGCGCCGAAGGTACTCTTCAACCCGTCCTT
CTCCTCCTCTTCTGTTGAATACATTTGCTTCAGCATCCTTTCTTCTGGTTTTGATGTGGA
CCGATCCATGATGTGCAGATGCTCTTCTTCAACGTGTGCTCTTGAATCTTGATTGAGCCA
AGCGAGGTGATGATGCTTTTGCTCCAACTGTTACCCCTCGATGTTCTCTTGTTGCTATTC
CATTTATTTTGGATTGTAATGCATTCGTGAGCTGTTGCTTTCAAGAACTGAAAATATCCA
GCTTTTGCTCAT