morexGenes - Barley RNA-seq Database

Contig contig_48389

Source Contig contig_48389

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_48389 (4778 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_48389

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64123	1	414 bp	MLOC_64123.1	Available	Available	None
MLOC_64122	2	1727 bp	MLOC_64122.1	Available	Available	LOC_Os03g51430.2, FRAME:+2, EVALUE:2e-162, 13103.m05591 protein SEC14 cytosolic factor family protein, putative, expressed

CDS Structure of MLOC_64123

CDS Structure of MLOC_64122

Contig Sequence (4778 bp)

>contig_48389 4778 assembly3_WGSMorex_rbca.fasta
GAGAGAGGGGGGGAAGGAGGGAGGAGTTAGTTTTGATAAAATATAGGGTGTTTTTTGCAA
AACTTAAAATAACGGTTCGACTTGACTTACAGAAGGACTGCGGGTTGAATCGTAAAAAAC
GGAGGGGCTTTTGTGCAAAACCGACGACGACGTACGGCAGAAGCGATTCGTGGTTTATTA
TTAGGGGAGATTAGTCGGTGAGTGGTGGCGTTTTCTATCTCATAAATATAGGATATGATA
TATAGCAGATTATAGGCCGTGGTTGATTGTCCACCACAAATCTCGAAAGGTGATGGGTCT
CTTTTGTGCAACCTACAGTCACGTTTAAGAAAGAGTAACAGTACCGAACGTCTCCGGCGC
TGTCTACAGTGGTGCGCCTTCCACGCCCCGTCGGTTTCACCTTTCACGGCAGCTCCCTTG
ACCCTTGGCCTGTAGTAAACCGCACGCGTCGCTCGGTTCACCGCGCGAGCCCAGGCCAGC
AGAACCCAACAAGGTCAGCGACACCGGCGACGCGCCAATAACCCACTCTCGGCCAAGGAA
GCCAACCACAAGATCGACCCTCTCCAATGGCGTTGGCGTGCTCCCCCGAACCCCCGCTCA
TGGCAAGCGCGTGACCGATCGATCCCGCGCAACCTCCATTCCACGGCGTTGGCGCGGTGT
TGCCTCCCCACCTCCCTCACCCTGTCCCTCTCGTGTTGTTTATTCTTGCGCCCCGACACG
GCAGGACGAGGAGGGGACGGATAGGAAAGCGCAGCCCAACTCCCAACGGTTTCTCCTCCC
GGCCAGTTCGTGGGCGATCCCCGGAGCCTGAGTCGTCGCCGGCCCGGTTCGTCTTCGGTC
TTCTCCCGGGGCTTCTTCTCCTCCAGGTACAGACAACTTTTCTCCTTTCTTGATTCCATT
TCTTGTTCTTGCTGTTACCTGGATGGATTGGTTGTTCAGTTGGTTCTTCCCCGTTCATGC
TCTGACGATGATATTGAACCACTCGTGCTCACCATGCTCCCCTGGGTATTGGTTTGGTAA
ATCCTGTGCTTGCGTCTGAAAAACTCTGAAATCCATCAGGCTCTGTTCATCTGAAACCCC
CTGCTATTTTACTGTACTTCAACTCTGCAAGACTGCAACTATTATGACTGTGTTCATCTT
TTTAAAGGGAAATAAAACATGCCTAGCATCAGCAGTACAGTCAGATTTAGGGACTCCCGA
ATATTCATGCTTATTATTTACTCAAGGTCCATGAACCAGCACAGAGTTACTGATAAAAGT
AACAACGTGAGTGAAACCTTCATCTCTCCCCAAGCTTGAGCTTTTGCGTATGAAGTCAAA
GGTTGGGGTGACAATTAACAAGTCAGAGTTGCATAAGGGCTGCCATTTAAGGCCGCCCTA
ACAATTAATAAGAATAATAAGGGCCGCCCCTCTATCTGTTCTTGTCAGCTACTGTACTAT
AATACTCCAGGCACCGCGGATCGTGCTGCGATCCACTCACGGCCGTAGCAGCATGTGAAA
ATCTAGCTTGCGCACGTTTTTCGATCTGATTCGGGGTGCCGGCGTAGAACTGTCGTAGCT
TTGCTTGTCCGCTGTGCAGTATTGCTCCTCAGGATAATTCAACTTTTTCTAGATCTTGGA
CTTGTTCATGGAGTAGGACGTGACCTTTGTAGTCTACTAGCACAGTTGATTAGGACGTAA
CCTTTGTAGGCTTAACACATTTTCTGACCCTCTCAATTGATGGGCGACAGAAAATAAAGG
GAAGATGCACCCATCCTTTTTCAGAGATAGAGGCAGTAGGTAGAGCAAATTCGCTTATTT
ATGCTTGCTGAAATGGGTCCAAATACTTGTGGTCTTCTTATGATTCATTCAGACTTAACA
GGATGGTAAGACCTCACACTCACAGTGTGGTAATCTTTCCATTGGCACACAAAAGTGCTG
ACTTATGCTGTTCATTCAACAACATTCTCTAGTAGAAGACTAGAAATATAATTACATCAT
GGTAATTTTTGTCCAACTTTAAACATTATGGTCATTTTTGTTCAACTTTAAACATCATGG
TCATTTTTGTCCAACTTTAAACATTATGGTCATTTTTGTCCAACTTTAATTGTCATTTTG
TAGTGTTATCTGCGAACTCTTGTAATAGGAGTAAAAACATAATAATACCAAGAATCTCAC
TACATGAGCTCTGAACCGCATAAACTGGATTTGAAACCACTTTCTCTCAAAAGCACGATG
AATTTATTTTGAAATTCAAGGAAAAAAAACAGTATTCAATTCTTTACTCATCTCACGTGC
ATGTTAATTTATCACCATTTCACATTTGAAGGTCGAGCCTCAATAAGTTGAAGACAACAT
GTTTCGTAGGAAGCACGCCTCTCATTTCAATTCAGATGATTCTGAACAACGGCAAGCAAA
GGTAATAATTGAAAAATATTCATGTTTTGGTTATGCTGTAAAGCTATTACCATGCAAAGT
ACATGTTCTAGGAGCTAATATTGCAATGCTGATGTATTTATTAGTTTTTCTCCAAGGAAC
TTTCATAACATATACACCGGTAATGGTCGTAATGTAGTTGTCACTGCAATATTAATACGA
CCCCCCAAAAACAGAAAAACAAATGGGATTAAAATGGGAAAGATAAAGAAAAACTTAAAA
GTTTCAGTATAACTTCAGATTTTTTATCAAGCTTCCATCTTATATGCATATCTAAACAAG
TTAAAATGTGCAAAACTTTGAACCTGAACATAGCATAGTAGCCCGAATGGTTCTGGCTTA
GTAAGTGAAGACCAAAGCCACATATATGTAAGTAATCACCTATATATTATTTATTTGTTG
TGAGACAAATTGTTTGACATACTCCCCTGCAAAGGATGGTCCCGTCCTATGTTGTGATGG
GAATGATACTGTGACAATATGAGTCTTTGCATAATTTTTTGTGGCAGTTCAGATCTTATA
TAGACTGCTGAATGATATCTTGTTTTGCATAAAAGCCCATATTGTAGCATTTTAAGGAGT
GTGAAATGTCTGACCACACAATATTTTCTACATGTGCTTTGATACAGATGTACATGTTGT
AACTGATAGTCTGATACAACATAGTTCCCTTTAGTACGAGAGCCTGCAGGAGCTCTATTA
TGATTCTTTTAGATGTTTCCGGTTCAGTGGAAGCCTGTAAGCAATATCGATGCATACTAG
TTCTTGTCGAAGATAAAACTACCCTTGGTATCCGATCTTTGGTTAAACAGATGTACTGTT
TTTTCTTCCATTTCTCATGTCAATCTTCTGCTAGCAGATCAACGAACAGAGAGCTGCACT
TGGGCCTATGTCTCCACGTGGCGAGAAGTACTGCAGTGAAGCATGCTTGGCTAGGTATCT
TGAAGCCCGCAACTGGAATGTCGACAAGTCTAGGAAAATGTTGGAAGAAAGTTTAAAGTG
GAGGGCACTTAGCAGGCCTGAGGATATTCGCTGGGTAAATATGCTCTTTCCTTCCCTGCA
ATGCTCAAGTGATTTCTTTCTCAGAACTTGGTCAAGTAACCAAGCGTTCTTCTGATTGTT
TTCATTTTCATTCCAGCCTGATGTTTCTGTGGAGGCAGAAACAGGTAAAATGTACAGGGC
AACTTTCACAGATAGAGAGGGGAGAGCCGTCGTTATTATGAGACCTGCAAAGCAGGTAAG
AACTCGCCCTTTTTTTGGTGGACTAAGCTTCCTTGACCTTTAATTCACCCGTATAATTTT
TTTTAGAATACGTCATCTCATGAAGGGCAGTTGCGATATCTTATATATACCCTGGAGAAT
GCAGTTCTCAGCCTGCCTCAGGGTCTAGACAAAATGGTGTGGTTGATAGACTTCACAGGA
TGGACACTGGCCAATGCAACCCCCATAAAGACTGCCAGAGACAGTGCGAATATCCTGCAA
AACCATTACCCCGAGAGGCTCTCGGTTGCGTTTTTGTTCAATCCCCCCAAAGTATTTGAG
GCTTTCTTTAAGGTGTGGCCCTGAACATCATCCCTTCATTACTCTGATTCTCTTCAGAAA
GATTATCGATAAGTGCTATATATTCTGTATTCCCTATGTTCCAACTGAAATGTTTGAAAT
GGTTTCAGGTTATCAAAGTATTCCTCGACCCGAAATCGATCCAGAAAGTCAACTTCGTGT
ACAAGGACAACGAGGAAAGTATGAAGACAATGTACAGGCACATTGATCCAGAGGTCCTTC
CGGTGGAGTTTGGAGGGAAGAACATTGTGGTGTACAACCACGAGGATTACTCTAAGTTGA
TGACAAAGGATGACATCAAAACAGCAAGCTTTTGGGCAGCAGATGTTAACCATGTCGTGA
ACGGGGGTTCGGTGCCTCATGTTATACCGGAGTCGTCATCAATTGTTGCTAAAGCAAGTT
GAGGAACATCGGCGAGCCATCTCGCATGTTGACGGGCTTCAGCAAGCCAATGTGGCGCGG
TTCTTGGTACAGCTCTGATAGAGGAATACAGCGATACGTTGAGGATGTTTGGATAAATAA
ATGTAACTGCAGAATATCTCGCATGTGATGTTACAAAAATAGTACTGCAGAATCTATACG
TTGAGTAGTTATTACTAATTGGGCGAATAGCTCCTGTGCGACGTTTTTGAGGTGAATTAA
AAGGAATGCGACGTCGTTGGTAAGAATGGCTCTGCTGCGACACCTCTATGCGCACAAATA
GCCCAGACACGACATGGCCCTTAAGCACAATATGTATCAGGATTAGGTGGAGCCGGGCGG
GACCCATAGCTGATCCACGTTGGCATGGGACCCAGATG