Map Locations of contig_48370 (7992 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_48370

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64103 1 1285 bp AK371280 Available Available None





CDS Structure of MLOC_64103






Contig Sequence (7992 bp)

>contig_48370 7992 assembly3_WGSMorex_rbca.fasta
TGGTCTTAGCCGACGGAAAATACTTGAATATATAAGCATCTTNNNNNNTATCCTAAGAAT
CGATACTATTTTTAGGCAAAGAAGGAAACCAAGTTTTTGATAAATTAAACGTTACTTTTA
TTTTGTATTTGTTTAAACCTAAATCGTAATTATTCTAAAGCGCCTATTCACGTCCTTTTA
GGAGTATGTTGTATATTTTTTTATGAACAATCACGCTGTGTTGATATGTTTCGATATTAT
GCGCAGGAGGCGACTTGATTTCTTTTAATCGTGTATTAGAAATCTTAATTTTTACACTAG
ACGATTGTGCCTATTTTTGAGATTCCACGCAATGTAAAACAAGAATTTGGATCGATCTGA
AATATTAGGCCAGGTCAACCAGGCCACGGGCTATTCTTTATATGGGTTGACATGTTACTT
CTGAAATTCTTTATATGCATTGACATGTTACCTCTCAAATTGGCTTTCGGTCACGAGGGT
CAGTCTAGGTCGGTCCATTCCCATCCCAAAATTTGGCTAGACAAGTGATATTCAGATGGG
TGATGCTATGCATCGGCCGACGGATCGCTATTTAGATGGGTGATGCTACGAGTCGGCCGC
CAGATCTTTTTAAATGATCCGCCGTCTCGCGGGACATTAGTCCTCTATTCTGCAGCAGAG
GTCTTGTTGTACAAACATCTACAACAAAAGTTATGTTGCATATTTTTTTACAATATAGGT
TGTTTTGCTGGATATTTTGTGCGACATTGGTTGAGCTATTGGATTTTTTTCCTTTGCAAC
AGAGTTCTTATCGTAGATATTTTTTTGCAACAATAGTTTTCTTGTAAAAAAATTGCAAAA
AAACTGACGTTGTAAAAGCTTGTCTAAGTTGTTGTTGTCGTTCGTTGACATGGTTTGCAA
TATCGTTGTTGTTGCAAGATAGATAAATCGTATGTGAGCCTGCTTTTGGACGTGTAGATC
ATGTACGATCCAATGGTTAAGCTGGTGGCGGAAATCTCAGCGTGATCAGCCGGCAGACCA
TTAGCATTTCCCTATTCAGATCGCCCAAAAAAGCTAAAATTTGGTTCTCAAATTTATTAG
CCTATTGAGAATATGAAAAATCATAACAAAGTTTATTACTCCCTATGCCTCAAATATGAC
ACATATTTTGACACTACATTCTGAGACAGGGGAGTTCATTTCATATTTCAAAGGCCAATA
CTTACAACAAAGCTTTCATAGTTCACAATCGGCAGCACAACAATGTCCCCAAATGTCAAG
AATTGTACTCCTCCATTCCTAAATATAATCCTTTTTGAGAGTTCAACACGGACTACATAA
AGATGTATACAAATATATTTTGGAGTATAGATTCACCTATTTTTGCTCAGTATGTACTCC
CTCCGTAAAGAAATATNNGAGCATTTAGATCACTAAAGTAGTGAAATAAACACTATTTTT
TTTTACAGAGGGAGTAGTTCATATTGAAATCTAGAAACGGAGTGGGTACTACCAATTACA
TGCGTTCCACAACAGTCTAACTAGGTTCGCAGGACTGAAGCAAAACAGTCAAACTAGGTT
CGCAGGTCTGAAGCAAAACAGTCTAACTAGGTTCGCAGGTCTGAAGCAAAACGGTACTCA
TGGGTCTTAAAACACAGCGATGTCACAACAAAGCATTGCCATCAAGCTGGGAGCCCCCGC
TATTGGCTCTACAAATCTCTACCTGGTGCTAGGTATCCAACGCATAAAATGCAGCAAGGT
TCGAAAATACATCTTCCCAACTGCATTACATTTCCTGCGATTCACATCATTCAAGAGAAA
AACGAAGGCACACGCAAAATGAAACAAGAATTCGGTCAGGTAACCTCACGAACATGTTAC
CAGGTGATTTCTGAAACAGCAGGAATGAATTCTGTATCACAGCTAACAGCTACAGGGCTA
AATCCTTGTAACATCAGATACAGTGGGGGTAAAGGCACTACGGCACAAACACAAATCAAA
CACTCAGCACACTAGACACAAGAGAAGCACAGCCATTTTGCCACAATGTTGCACCAAGAC
CACAGGAAAACTGTTCATATTGATCAACCAAAACTACAAGGACATTGCTCAAAAGAACAG
AAATACCCCCAAGAAACTGCAACATCTGTTTCAAACTAAACCTCAACACAGTAGTAGAAT
GCAGTGGATAGTCAGGAATGACAGCATTATTGCACTGTGTTGCTAAGCACCATTTCAGAT
GTGGATGTTCTACTGTTTATGAACATTCTGAACTACTCGATCCGTCCCAAAATAAGTGTC
TCAACTTTAAAATAAGTGTCTCAACTTTGTACTAGCTCTAGTATAAAATTGCAGTAAGCT
TGAGACACTTATTTTGGGACAGAGGAAGAATAATACTAGAAATTTTAAAAGCTAACCTAA
TGATGAAATGCTCTATCTAGGTAACACGGTGATATGTGTTTGACTTACGATTGAACTTAA
TCTGCCTAAAATCACATACCATGCTTTTCCTATAGGCAAATACTAAGACATGTAAGGAGG
TACGCCATGTTTTCATCAGCCAAACCTAACTGAAAACGGATTACACTTCTACCTACAGGC
ATCAGCTAAACCTGACAAAACAGGAAGATGAACCAAACATTATTTAAAACTTATTACTTG
TGCTTAACAAGCATCATTTGCCACTTGTCATCAATATACACACAATATGCAACACCCAAA
TGAAGATCACTGCTGAACAAGAGCAAAATGGGCGTTTCTGCCGTTTAGTAGTTGATAAAA
ATGATATCTATTTGCAACAATCTAGCAAAACTGGAAACATAACATCAATATAAGGCAATG
ACACTAAAAATCCTTAAATTGGGTATCAAGCAAAGTCATATTCCAGCAACTACCAGATAC
CCTCAAACATCTCACATCACATCCATATCACGATATCCTGACAAGAGCTGGAACAAAGCA
TCAACATTCTACAAATTGTGAGGTAAAAGTCATCCTAAACGAATTAGTCTGATACTCTTA
TATACTACTACGTATTAAAGATCCAACGCACCGTTCTACTCATCCGGCTAACTTAAACAT
AACATCAGTCATCAGGCAACATCATTTAGCATGAAAACTGAAACATAGCATAAAATATAG
TGCAAGCACGCAACCATATCAAAATTCCTCAACATAGGTAACAAGTAAAAAAAAAACATA
ATCGAGCAACTACCGAGTAGCCTTAAACATCGCACATCACATCATACCACAATATCTTGC
CAAGGTTCGAAACTAATCATACGGAGTCTAAAAGTGGGGAGGTAAATCAGAGAAAACCAC
CCAATAGTCGACGATCCTGCAGGCCAATCAACGGTAAGACTTCTGGAACCTCGCTCGGGC
GCCGCGACCACCGAACTTCTTGGGCTCGCAGCGACGGGGATCGGCGACGAGGAGGGTACG
GTCGTAGCGGGCGAAGATGTCCTTGACCTCCTTCTTGGCGGCCTCGTCGACATACTTCTG
GTAGTAGGCGACGAGCGCCTTGGCGACAGCCTGACGGATGGCGTAGATCTGGGAGGTCTT
CCCGCCGCCGCGGACGCGGATCCTCATATCGATGTCCTTGAAGCGGGAGCGGCCGGCGAG
CATGATGGGCTCGAAGGCCTTGAGGCGGAGCATCTCCGGGCGGATCAGCTCGATGGGGGC
GCCGTTCACCTTGATGAGCCCGCGCCCTGGCTTGGTGTACGCGACGGCCACCGCCGTCTT
CTTGCGCCCGAAGCACTGGACCGTGCCCGGCGTCGGGCGGGTGAGGACAGCAGCCATGTT
TGCGGTGGTGCCTGGTGGGAGCGCGGCAGCGGCAGCGGCGGCGGCGGCGGGATCAGGGGG
GAGAGGCGGCGGCGGCGGGATCAGGGAAGAGTGGGCGATTTTATACCTCGGAGGAGTTGG
GGTTTATGCAGCTCAGGTTAATCAGTGAAGGGTTGAATGGGCCGAGGTAATATGTTGGGC
TTTCTCACGGGCTAGTCATTTGCTCCTCGTGAGAAAAACCCAGACGTGACAAGGCCGAAA
ATGAATTTATATCCACTACTTTTTTTAGGATAATTTATATCCACTACTTTTTTTGCGGGA
AATTTATATGCACTACCTGATTTGCTATTTCTCAACAGCAAAAAAAACTACTACTCCCTC
TGTCAACTAATGTAAAAGCGTTTAGATCATTATTTTAGTAATCAAAAACAAAAAAGACTT
AAACCAAAAAAAGGAGCTGCCCTAGTACCGAAAAACCATTGCCATGGTAGCCGATCCAGA
AGCGATGCTGGATTATTAAACATTTCCCCCTTAAGCCAAAAATGGCTTTGATCACTTCAC
TCCGATGACACGGATCTCCTCGCAAACTTGGTAACCCCGAGCCTCGGTGAAGATGTTCGC
AAGCTACTCATGGAGCTGACGAACTGGGGTGTGACTGAGTCGTTGTTGTTGTAGTCATAG
ATGAAATGGTAGCACACCTTGATGTGATTTCTCCTATTTGTGGAAGACATGATTCTTGCA
AAGTTGAAATGTAGACTTGTTGTCCAAGTGCAGCTGGGCGACATATGGAGCGGTCTTGAG
CAGATCACCAAGAAGTCGCCCAAGCCAAACACCATGGCACACCGTTGTTGTCGTGGCGAG
GTACTCAGCATGACGAGAGCAGAGCTACACCACTTCCTGCTTCATTCCCAAGGCTAGCGG
AGCTTGAGCCCCCTCGAATCAAGCTCTCAGGTTGTGCACAAGCTCTGCCACGGATGCGGG
CTCGAGCTTGCCGGCGTTCCGCCTTATTGAGCATTGCGGGCATTAGTTCCCACGCCCACA
TCCCACCTCCCTAGAAAGGTGTTGTGCGATCTACAACGCTCATGGGAGCTTCCTGGTCAC
ACATAGCGCCCCCCCCTCGAATCAGCCATGGCCCATGTCCGTCTTCGCGTTCTTGGAGTA
ATGCTCATTGCCCTTGGTGTCTGCGTGGTAGCATACATGCTAGCGGCCAAGGACAACGGC
TCACGGCCATTGGCGTCATCGATGACACAACCATAATCCATCTATTTTTTCCTTTCACTT
TGTGTTGCGCTATTTTACACAAAGCTTGTTGTGAATTCAACTGCTGACTAGTGCGCTCCT
CATCTGGCCTGAAACGATTTTACGGGATCTGTTATGGTATTCACATTAGCATTTTTTTGA
ATTTATTTTAGCCTTTCTTGTGATGTTCGTTCTATGGGAGAAGACATTTTCGTCACTATG
ATGTGCGTGTATGATGAGTTCGCCAATCTAAAGATGCTGTGCTCGTTTAGTCTCTCGAAT
TTATTCATAGAGGTAAGATGTGTGTTTTTTAGAGACAAGTCCATTTCAGTGTCTTTGATT
GTACTGTATTAAAAAAAACAATAATGTAAACCGATTTTGCTGAGATTTTGTAGTAGTTGC
TTTAACAAGGCTGATGTGTGCCTTTTAAAACTTTGTAGTGAATTTCGTTTCCACTTGGAT
TCATTTGTTTATAAGAACACATTGCATTCCATTAATTAACTTAATATGCTGGGTATATCA
CCAGCTACAACTTCTCTTATAAATTCTGGGAATTGGCCCAGCCAGGTTTCTAGGCTGCCA
CTCCTCATACACGCACCATGCGCAGCTAAAGTGTGAGCCACTCTGTTACATTTTCTACCG
CAATATTCAACACCTACAATATTTTAGGCTGCCACTCCTCATACGCGCACCATGCGCAGC
TAAAGTGTGAGCCACTCTGTTACATTTTCTACTGCAATATTCAACACCTACAATATTTAA
GCCCACGCGCATTTGAAATTCAACATCCTCGAACAAAGACCCCTAGCTGTGAAAGATAAT
CCTCCGTAGTAGTAATAGCCTATTTTAGTAGCATTGAATCAACATCACCTCATGGCACCC
CATCTCAATAGCTATATTAGTTGCTTGTTGCATTGCTGAAACTTGAGCATGCACGGGGTT
AGAGCATCTTTAGCATATCCTATATAATTCGTCGACCCGCAAAATAACCGTCAAAATACG
GGTCGAGGTGGAAAAAACTATCCGATCAAACCCAAACGCGTTCTACCCGTAATTTTTTTA
TGGGGCGCGGTAAAATGCCCACCTCAACCCGCGAAAACGCAGGTTCTTCCCCTCGCCCCG
TCAGTGCCTTGTATATCGAGAGCCGTTGGTGGGTAGGACATTTCAGCCCGCACTTCCCCA
CACCCACCGCCGCTGGACGCCGCCTTTGATTCCGGCCATACCAGCTGCCGGGATCACGCC
AGCGGGCCGCCACATGCCCTAAATTGACCTCCACCACTCCCTCGTGCCTTGGCTGGCCGG
AAAGCTACAGATCGGCGGCTATTTTGTCACGGCCACTGAATTTGGCTTTTCCCGCCACCG
GCGGCTGCGCCAAAGCCACAGATTGGTTGGGGAGCATCCCGCATAGCCCAGGCAAAGCGT
CAGCGCCGCATGCAGGTACTCGTGCGTCCTCTAGTTGTCGTCGTTGGTTTGCCGACAAGG
ACTCTTCCGGCCGTCGCTCGGGCTCGGTGGTTGCGCAGCGGCTCGCCGGCTTGCCGATGC
CGCTAATACAGTGCAACAGTTGCCTAGAGATAGTGTTGCGGCTCACATCTAGCACACGTT
AACACCTTGAATGGGTATTCTTCAAATGCAATAACGACGGGGTATGTTCTTCTTTCTGTT
CGGCTTCGTCATTTATCTGGTTAAATTTCGGTAGTTTATCGAGGTGTTCATGTGTGTAGG
AAGGTGGATGCTCATTTTGGTATTGGGAAGAAGAATACATCAATTTATTGATAGAAAGAA
ACTTAATAGATGTTCGTGCACTCCTTAGTATAATTGAGGCTAACGATGCAGCTGCATGTG
CAATTAGAAAAGAAATTAGAGGGAAAGCAACGTCTAATTCTTTAGAATGAAAGGCGAATA
ATGAAGAATGTAAGATCAAGAATCCCTAGATCAACAATGAATACATGGAGAAGATGTTGA
TCCAACTAGTGGGAGCAGTTGTGGAAGTTGGATATCTTCTAAAATGCCTAATTGTGATTC
TTTTTTCTTTGGTCTTGATATTTTAGCAAAGATTTGATGAATTATTATGTATCCAATGCC
TTTGTAGAAAATAAAGAAGCAAATAAATGTGTTTTCATGCTTGAAATGGGAAGGCAAATA
ACAAATTTGTGGGCTAGCGTGGGCGGGGTCAAGCAGACCCCGCAAAACGGACCCATATAA
AAGGATATCCGCGTGAATATCCTTTTATACGGGTCTGGTTTGCGGGGTTTGCTCGACCGC
CGCCCACGCCGGCCCGCAAAACCATTTTTCCGTGAAGTGCAAACGACTTTTGCGGGTCGG
CTTTATATGAGGTCTACTAAAGATGCTCTTAGAGACATTCTCTAGATTACCTACACCAAC
TGCTAGCAGAACGCCATGGTCATTTCGAATAGCAAAGCCCCAACCGCGTGTATATTCTGA
CGAAAAAGGGTTTCCCCCGCTTTATATTATTAATCTTGGACCAAAGCATACAAGAGACCA
CAATGTTCAACGCACCCAAGCAATTGCCAACTAGCACACGACCATGCCCAAAGTACAAAC
GAAAATACGAAGTCTTGCTGGGGGAGCAGCACAATAATCCCCAAGACAAAAATAAGGACA
ACTAGCCTAATCCGGTCTGGCGGAGGACAATGTAGCGGAGTTGAGATGGATGACATGCGG
GCGGCAACGCCCCTCAATGCAGCAGCAATCGTGTCGATGGAGATTCGGTCATTGCACCGA
CTAAGGGGCCGCCATAGTTGTAGAAAGCCACACAATTTGAAAATTGCATCAGTCGCGCGG
AGAGGAATAACATGCTCGATCACAAGCTTATTATGAACATTCCATAAGGTCCAGAGGAGG
GCATTGATGGTAACCCAGATGGTGTGTCTCACAGCGGCGTTGTGCGACCGGAGCACCTCG
GCAAACATGTCAGACAGGTTGTCGTGGCACCAACTGCCCCTAACCGCCCCCCCCCCCCAA
ACAACTCCACAT