Contig Data
morexGenes
Links



Map Locations of contig_48349 (3329 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_48349

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64088 2 1791 bp MLOC_64088.1 Available Available LOC_Os01g11240.1, FRAME:-2, EVALUE:9e-79, 13101.m01212 protein DUF538 domain containing protein, putative, expressed





CDS Structure of MLOC_64088






Contig Sequence (3329 bp)

>contig_48349 3329 assembly3_WGSMorex_rbca.fasta
CGACAACTAATAACGTATGCAATTTTGAAAACTGACGGCAATGGAGTACCGATGCAATGC
AGATGATGNNNNNNATGCGATGATGAATGCAACTACCAACTACCAACTAAAACATACGAC
GCAACGAAATAAAAGGAGAATCTTCTAAAGCATCGGTCTCGGGCTGTCACATATATATCA
TGCCTCGTAAATCCAACACCACCGTACCACAAATGGTTGCTGATGAAGGAATCCATAATA
GTGTGAATTCTAATACCTACAACTCCCGTGGACAATATCAGAGCTTTCTGGTACTCTTTG
ATTTTTCTGTGGGACCAAAGAAAAGGTATTTCGTCCGGTCTTGCTAACATATGGCTATGC
TTGTCCTCAAAACTAGAAACATACCAAACCCCAAGCTTTTCGTTAAGCTTCACTGTCAGG
TGCGCTTCGGAGATTTAGCGTGACTCGGGTCTGAGCCTACGGCTGCGTCCATCGTCCGTT
AGCAACTTCTTGTCATGTTTCCCTTCTGTCGAACAAACATACCGCCTCAAACACATATGA
TGTGACTCGATTTTGCTATATGTGACCTTATCCTTTCTAATGCTGAAACCATTATCTCTA
GCATAGCTATTGTAGAAAACGAACGCAACTGCTTCAGACATAAAAATCATTTCTGTTATC
TTCATGAACATATCCCTCTTAGCATCTGCATGGGTAGTATCTTGGACATTCTCTTTCCCC
TCATCTTGCGTCACCTAAAGAATCAAAAGATAGCCATGAAAACAATTTTCATGGTTCAAC
ATTTCTTCCATACAACATTGATTTCATACATAACTCACTCAAGTTGACCGACGACTGCGA
CTCCCCAGAATCAGGTGCATCTACTGATTCGTCTCCAATGCCTGTCTCCGCATCGGATTG
ACCGTAACAGTTGTACGCATTATGAGATCGTGAAAGTAGCTGAAAAATTAAACACAAATA
CATAATTAGTTGTCATATTATATTCCAAAAAAATCAATTTGCATGCCAACAATAAATTCC
AGTCCCGTTACCTGACTAATGTAATCTACATTGCAGACCTCGGAGTTATTTTGGTCACTA
TCATCATCCCCATCCATCTATAAATTCTCAATACAAAAATATCGCCAACGAAGAGATCGC
CGCCGTTGATTTTTGCATGAACTCGTAAAGAAGCTCAACTAGGATACGTATTGTGTGAAT
GATGGAGCTGCGTGAATTATGGAGCGGCATGTCGTACGTGGGGTCGTGCGATCTTTTTTC
CGAGGGATGCATTGTATCTATACCGTATGAGTTATACATGGCTTGGATATGGGTTACACA
GGACTTTGGTATGGGCCATGGTGAGCAAGACAAAAAAACTAACGGTGGTCAAGAATAGCA
ATCCGAAAATTAGGCTACCCCTTGTAAAATTAGGCTAGGGGGAGGAGGGAAGCAGGCCTC
TCACATTAGATGTTGTTTGCTTGTGTGATGCATCCGTTACACCTAACTATCAAATTGGTA
GGAGCCTTTTTTTCTAATAGTTTCTCCTGCAACCCATATTCTCTCATATTTTTTATTACT
TTTGATTTCTAAAATATATGAAATAATTCATGGATATTAGCAATGATATCTAATGTGCAT
TTGTAAAAAAACAACCAGTATTATAACAATTTGGAACCAAGACGATAAAACAATATTTAA
ATGAATGGTATCCATACAATGCCCATATAAATTTCTATTTTACATGTCTGAAGATCTTAT
ATTGTACGTACACTTCCTGGGTTTTAATTTACTCCGCATATTAAGTTTGTATAAAGTCAA
ACTTTAAATAATTTCAACATATTTGTAGGAAAATATATTAACATATACACCGTCAATTCA
ATATCATTCAATTCATCATTGCACATATTCACATCATATATTAACATATTGCTAGTACAA
ACTTCGTAAAATTTTATAAAGTTTGACTTCTGTTCAAGCTAATATGTGAAGTAAATAAAA
ACCGATGGAGTAAGGAATTTTTGCATATGCATATATTATATAATGACTTACATCCATGAA
TTACTTTGTAAATTTTCAAAGCAAGTAGTAGTCGTAGATGACAATTGAATAACTCTTCGT
TCAAACTTTTTTCTTTAAAAAATCTTCATCCAAACTCTTGTAGCTTGTTGGTAGTCGTCA
CTTTACTTGGCCACGGCGGCCTCCTTGCCGTCGGCAGCTGCGGTGGCGGGGACCTTGGCC
TTGCCATCGTCCACTTTGCCGAAGGCGGAGACGGGGAAGGTCCTCCTGAGCCCGGTGGGC
GTCTTGAAGGTGATCTTGGAGGGGTCATCCTTGTCGATGTACATATCACAGAGGGTGATC
CAGATGAGGAGTTCCTTGCTCTTGACCCCGGTCATGCGCTTCATCTTGCGGTCCTCGACG
AAGGCCGTCACCTCGGTGGCGTACGAGACCTGCCTCCCGATCTGCTTGAAGGTGTGCGTG
AGCGCCTTCTTCTGGCGCAGCCAGACGAAGCCGGTGGCGCGGTTGTAACCCACCTCCTCG
ATGTCGGCCAGCGGCAGCAGGCCCAGCGGCAAGTTGGTCTCGGCCAGCAGCTCCACCGCC
TTCTCCGCGCACAGCGCCGCGCCGTGGTACACCTCCGCGCCCTCCCTCTGAGCCTCGATT
GCCTGCGCCATCTCGACTGGTTGAATGAATCAAATCTCTCCAAGTAAACTCAGATTCAAC
TCGACGGTCTGGAGTTGCTGGGGCCTTTTTGGGTCTTGGGGGATTTCGTTTGCTGTTGTG
GGATTGGGGGTTGGAGAGGGGTGGATTTTATAGGTGGAAAGCAGATGGATACGGTCGTCC
GAGCTGGGGAGGAGGGAGGTTGGGAGAGGGGATTTAAGACAATGGCTTATTAATGCGTGG
GGAAGAAGACGGTTGGGTCTCTGGCTCTCCGACGCACGCACGCGGGCGTGCCGTTGCTGG
ATTCCTTGCTATTTTTTCTTAACTGTTCCCCTGCATAATGAATCATGTAGGTTTATGTCG
CCTTGGGTAACAGCATCTCAACTCGCCTCCCCCCGTCCCCACACCCCTACACACAGCCCC
CCACGTGCCTTTTTTTTAGTGTCGACAGCGCAAAATTAGCCCAGTCGCATTCCCAACTCC
TCGTTCAGCACAGGTTTGGGTTAAAATAACAGCCAACGAACCCGAGCCGAACCCAGCCCC
CCGAAGGTGCGTGGAAGCGTCGGTGGAAGCGAAAAGCCAAGCGGGCCCGCTCTGTCGGCG
GCAACGGGGCCATTCCTGCCGTTTTCTCCCCTTCCCTCATCCCTTTCCCTCCATTTCCCC
GCGTCCTCCCGCCATTCTTCTCCCGCTCC