Contig Data
morexGenes
Links



Map Locations of contig_48317 (8928 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_48317

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64057 2 1651 bp MLOC_64057.2 Available Available LOC_Os03g21030.1, FRAME:+2, EVALUE:3e-148, 13103.m02520 protein no apical meristem protein, putative, expressed





CDS Structure of MLOC_64057






Contig Sequence (8928 bp)

>contig_48317 8928 assembly3_WGSMorex_rbca.fasta
TCTGCACAAATTTTATCCAACACATATTGCTTCATTTCATCCCATTTCTGGAGCATAACT
GGAGATAACCTTCTCCTAAAAGAAGTTAAATGATTCATACTCTCCAGCTTATCAACAGTA
CACTCCTTATCAACAATACACTCCTCATCAACAGTTCTACGGTTTTCGATTCAATAATGA
AAAAGAAAGAAAGAAACCACCGTGGCCGCACTGGGTATCACTGCCCTGCAGGCCAGTTTG
GTGGTGCAGCGAAATAAAAAAACACCACGTCTCTGTATCAGGATGTGGAAGAAACAAGGC
CATAACAGGAGCGGAGCGCGTCACCATTTCGCCTTCCTTTTAAAGCGGGGGATGTATACT
CGATGAGTGAAAGGTTGAAAACTTTGGGAGCGCTCCTCGATGATGGCACCGAGCGTGTCC
TCTCCACTTGGGAAAGGGAAAGGCGCTGCAGAAAATTGTGGTGGTCGCGGGCTGTCTCGA
TGGCACGTCGCTCCCGTAAACAAACAACCCAAGAAAGTCTGCAACTAAAAAGATGCGGAT
GAGAAAGCAGAAGGGAACGGGACAACCACGGATGGATATCAATCTGACATGAACTCCATG
TGTGGATTCCGCGGGGGTTACAAATAGCTGCCATATCAACTTCTAGTCATCCTTTTTATT
TATGGAAAAGAAACTGGATGTTACTCACTAGTACTTCTCTATGTTTCTTGCGTTCCGGCC
AGTGCGGATGGGTTGAATTCTTCTGGTTGCATGTGCGGTGGGGATGTGCCGGTTTGCAAA
GTCAGAGTTAATCAAACTAACATTAAATCCAATGTGTATATGTATGAACTGTCATTACTA
GTACTCCATCTTAATGACAGTCCATGAGTAAATAAGAAGTCAGGTTTATGTATGAACTGC
CATGAGTACTACTACTAGTGTGGGTTTATATTTAAAGTAAGGTACTCCCACCATCTCGGT
GCATGAGGCATATTAGAGAAAACATATACAGTAAGTAAATAAGAAGGAGTCAGGTTCGTT
CCAACGCATTGTTGCCGCGTTAGCCGTGATCTAACGTGAATATTCATTCCACAGGACAGG
ACACCGGCCGGTGGTGGTGGAGGAGGAGAAGATACTCTGAATGTGAGAGAGTTGGTGTTG
GGGCCTAGGAAAGAAGAGAGGATGAATCAAGAGCCATTAAGATGAGGACAAGTAATTACT
AGAGTTGCTTAAGATAAGGGCCACAGCTGCGGTGCGCGCGGTAAGAAGTGAAGGACGGGA
GGGGTCTTGGCCCGCAAGCCGCACGGCTCTCTCTCTCTCTCTCGCTGCGCGTGACCGCGT
GGAGCCTTATATAAGCCGGCCCTCGGTTCCTCCCCCCAGTCTCTCTCCCTTGTTCCTAAA
CCCGCCTCTCCCTCTCTCTTTCACACACGCCTCTCTCTCTTTCTCTCGGCCTCCATTTCC
TCTTCTTCTAGCTCTAGCTAGCTAGCTTGCTTCGGCGCCCGGCTTGGAGATGTCTGAGGT
TTCGGTGATAAACCAGGCGACGGAGGTGGAGGACGCGGCGGCGGGGCTGGACCTGCCGCC
GGGGTTCCGGTTCCACCCCACGGACGAGGAGATCATCTCGCACTACCTCACCCCCAAGGC
TCTCGACCACCGCTTCTGCTCCGGCGTCATCGGCGAGGTCGACCTCAACAAGTGCGAGCC
ATGGCATCTCCCAGGTACACGTCCAAATTAAGCTGCTCCTCTGATCTGATCATCCGAGCC
CGACGGGCCGTGCCTTAAGCTTACTTAGTTTGCGTGTTTCCACCGGCCGGACAGGCAAGG
CCAAGATGGGCGAGAAGGAGTGGTACTTCTTTTGCCATAAAGACCGCAAGTACCCGACGG
GGACGAGGACCAACCGCGCCACCATGAGCGGCTACTGGAAGGCCACCGGCAAGGACAAGG
AGATCTTCCGGGGGAGGGGCATCCTCGTCGGAATGAAGAAGACGCTCGTCTTCTACCTAG
GCCGTGCACCCCGCGGCGAGAAGACCGGCTGGGTCATGCACGAGTTCCGCCTCGAGGGCA
GGCTCCCCCACCCGCTCCCGCGCTCCGCCAAGGTTGGTTGGTTTAGCTCTCGATCCTATT
TCATCCCTCCTTTAATTTCTCTGCTTGATTTGCTAAATACTTGACTAATTGGCGTGCAGG
ACGAGTGGGCCGTGTCCAAGGTGTTCAACAAAGAGCTCACGGCCACCAACGGGGCTATGG
CAACGGCAATGGCAGCGGCGCCGGACGCCGGGATCGAGCGAGTCAGCTCGTTCGGCTTCA
TCAGTGACCACTTCCTTGACGCCGGGGAGCTGCCGCCCCTCATGGACCCTCCCTTGGGCG
GCGACGTCGACCAAGTCATCGATTTCAACTCCAACTCTGCCTACGCCACCGGTGGCCGTT
CCGGATCCGGACTCGAGGTTAAGATGGAACAGCACATGCCGCCGCACATGATGTACTCGA
GCCCGTACTTCTCCCTGCCGGCCGCTAATTCCGGCGACCTGTCGCCGGCGATCCGGAGGT
ACTGCAAGGCGGAGCAGGTCTCGGGGCAGACGTCTGCGCTCAGCCCGTCCCGCGACACCG
GGCTCAGCACCGACCCCAACGCCGCCGGTTGCGCCGAGATCTCGTCGGCGCCCACACCGT
CGTCCCACAATCAAGACTTCCTTGACCACCTTGACGAGTACCCCGCCCTCAACCTCGCCG
ACATTTGGAAGTACTGATGACGCCCGGATCGATCGGAGCTGCGTGCCACACGATTGGCTC
TGGCTCTGGCTCTCCTTGATTAATTACTCGATTGGATTACTTGACTTGGTGTGTGATGCT
CGTGTTAGTGGTTTGCTGATGCATCATCTTCTTTCCGGAGGATTCTCAATCTCGGGTTGG
ATCAGGTGATTATCCATCCAGACGGACCTCCAGGGATTAGCTAGGCCTCCTTAATTATGT
TGATTAATTAAATTAAATTAACTAGTCCTAGGTTCATATCTTGATCTGTGTGTACATATC
ACTACTACTCTGATTGTGATTATGGGGAGTAGCAGTAACAATCATGATGGTTATACAATT
AATGGGTGTAGATTAGGGGGAGGACTTGAGATCCATTTATGAATTGATTAATTTGGGCGC
TGTGGATGAGCCGGCCAGACAGCTAGCGCTAGCTTTGTATGTACATGTACCGCCATTAAT
TGCTGTTGCTTGAGTTTGACATGTCACTATGTGAATCGATGCTTGTCTTCTCTTTGTGCT
ACCGCTTTACACTTGCTAATTGATCGCTCGGTTACGCCTTTGTGGGCGTAACTCGACGTG
GCGAGAGGCACTACCAGCTGTGCTGCTACTGCTCATGGACGCCTTCCGAAATCTAGCAAG
AGGAGAGGAGAGATGAGATGGATCATGGTTTTGGGCCGACGGAGGGGGCCACCGCGGCCG
CGGGCGATGGGTTCGCTCTTGTTTCGATCGTCCAATTATTCCCGGACCACGTCGTCCAGT
TAGTTGGTGAACTCGACACATATACGTACGTACTATAGGCGTCGTACAAGCTCCAGCCTT
ATCTTGTTTCGGAAAACACTCGCGGGCGAGCAACGGCCGAGGAAGGGACAAAAAAAAAAG
GGAAGGAAACGAGCACATCCGTTGATCCTAACAACCAACCTACGAACCAACCGTAGCTCG
ACGCGGGGGTGAGGGTGAGGGTGAGGGCGAAAGCTTGTCGCTCACACACACGCACGGCGG
CCGACGGCGACGAGCGGGACGGGCCCGATTTTGCGTGCGCGCACAGCACACACAGACGCA
GGTAAGGCGCGCCGGGACGCAAGCCGTGGCGAGTTTCGCGGCGATCCATTCGCTGTTGGC
ACGCGCTCGCTTCGTGCATCAAAACCCGGCCGAGACGGCGCGGCAACGAAAAGGATCAGC
AGGAATCTTCCATCCATTTTTTTTTCTTTCTTTTGCGAAAGAATCATCCGTCAATTCATT
AGTTGTACTGCTGCGACACATGGAAATATTCAAATTCTCGGTTGCTCCTTAAAAAAAAGG
GAAAGGCCAAGCAAGACACATGAAAACTAGTCGCATATCCTGGGTGGGTCCTCGGGCTCT
GGGAAGTCGGATTGGATCATTAGCTGTCCAAATCGCTGAGGCGCAGTGACGTCAGAACTT
TAGGCTCCACCAGCAGTGGCAGTCACCTACACCTTTTCTCCTTGTATCTCCTTGTGCGTG
CCCCCTAGCTATTGGCCATGGACAGCTTAGCCAACACTTGTTTAACTCCCCGTCAATGAT
CACAGGGAGATGGTCAGGAAGGGTAGGGTGCATCACCCATGTTGCCCCTAAGGATTCTCA
ATTATCTTATTATTTCGTTTCCCCAGGGATTTGGTTAATTAATCCGATGTGGATGTCCAG
ATGCAGGTTGCTTTCAGTCTGTTGATTAGGGCACGGGTTTTGTAGCCCATTTTATCCGGT
GATTAGACAAGACCCAGCCAGTGGCGGTTGACGTGGGGCCTCTTCGTTTCCATGTTTTCT
TATCACGGAAGCATCCATAATAAGCATTTGTTTCTGCATCAGATTAGATATCAGGGATCG
TTTCGGGACGTGACCACTAACTACCAAGAACCATAGGCCACCAAGACTACTCCCCATCCA
ATCCGTCGCTGGGGCAGATGGATGGATCATGGATGGGTGCATGATCGGCTCGGAGCACGA
GTGCTGGACAAATCCAACGGCGTTCTGGGTAGCTCGTATATCATGCGTTATCTGCACCAA
GTTCCATTTTGGCACAGACGGTGAGACAATGCTGCACAACGAACTACTCCCTCGGTAAAG
TAATATAAAAGCGTTTAGATCACTGTCTAGTATTAGTTTACAGACGGAGTAGAAACTTTG
TGGTGGGTTCTCGTCTGTTTTCTCTGTCTAGTGAACCAGGACGCGCGCGACACAGGAGCA
CTTCAAGAAGTGGACATACGCTAATCTGAGACCGCTACATCACATCTGCCTCTAGATTAT
TGGACATGGTCACAGCTTAACATCTACAGCCAGGTTAGGTTGCACTTTTAGCAAGAGAAA
GATTTGCCATAACAAAATGGGATCCTGGAGTAATGGCTGATATGGACTCTCCACATACTT
TTCGAGTGAGATGAGGTGCCTTTTTCATAAAGTTTGCAATCCTCCTTGACAGGAATGTTG
TGTTGCCCACACGGTCTCTATGATTCTACGCTTGACTTGTTTGGCTTGTGAGAGATAGAT
ATGTGCTGTGCTACTTTTGTCCCCAGAAAGAAATTCTACTTTTAGACATAAAAAATAACT
ATAATGCAGCACAGTTGCGATTTTTTTTTTAATTTTATTTGCGGGGTAGCATAGTTCCGG
GTTCATAGCTGGAAAACACATTCTTCACAACATCGCAGAAAAAAAGTATGTGTAGTGGAC
TAGTGGGAGGTAACAGTTTTGCAAAGGAGTCGCTTGCATTTCTGGCTACAGGTTTTCGTA
GCATCGTTCTCTGTATCTGTAGAAAAATGCTGTAAACAATGTATTTCACGCGCAGTTTCT
CTGTATACTCATATTTAACGGCAACTACGTTTTTGGTTTGGGTGGTTTCTGGAGGTGGTG
TCGGTCCACATCAGGACGGGTTCGTTTCATCCGCGTCGCGCTCTCGCTCAATACCTTTCA
CGCGCATTTTTTTAATCTTTCTATCCAAGAAACTCTCAACATCTCTCTTTCTCTCTCTGT
GTGTTCTCTAGATGGATTTTTTTTTCTTTGGTACAAGAGTTAACTGTACCGCCCTCGTGT
TGAGCTTCAAAATGTAATAACACAGTTTCTGCTACTGAAAGCATTTCTTGGTAGTACTTT
CTTTCCCAGCAATTGAACGAATCATGATTAATGCTTTAATTGAACTGCATGCCTTTGACT
TAATTTTAACGAGAAGAGACATCGCACGACGATCTGCACATCTGTCAAACTTTGCCTAAT
CTTGATGGGCAAAAGATCCATACCGTATTAATTGGAGTAGAAGAGTTGTACATATCTTAG
AGCTGACTTTGAATGACCAGAGAGTCCATACCTCCACAGCTTAGCTTCGCTGCCGTGCCA
CGCATCTTTTCTAGCATACACAAGGTATGTTTCACATGGCATATTTGCCTCGCCTAATTA
AGCAGGACGCCTTTCTGACCTTGACGAGTCACCGCTCTATTGGTGCATGCGTAAACCTAC
ACTTTCTCTCTAGATCTCATCCGTTTTCGTGTGGTTGATACGTCATATACATCGTCCTAC
ACTAGCGATTGAAATATAAACTAATGTGATATTTGCCCATGGCTCGGTCACCATTAGCAA
AATCGGAGTCACCAAACAACGACACACATGAAAGCAAGGCAATTGATGTACGTGTGTTTG
TCCGCGCGTGAAATTCTCTACAAGCAAGAGGTCGTACACATATATCCTCTTCGTTTTTTA
ATCTGCATATAAGGTTTGGTCAAAGTCAAGCTTTGTAAAGTTTGACTAATTTTATATTAA
AAANNNNNNNNNNNNNAACATGAAATCAATATTATAAGATGCACTACGAGATGTATTTTC
ATACTATATAATTTTAATATAGTATATATTTATATATTTTTATATAAATTTGGTCAANNN
NNNNNNNNNNNNACTTTGACCAAATCTTATACGCGGAGCAAAAAAAAAACGAAGGGAGTA
TGATCTAGTGCCTAGTGGCGCCTCGAGTCTGTTAGAAATAAATAGACTTGGTCATTAACA
ATTTCTTAAATTTTAAAGTGGTTCATAAAATAATGACAAGTAATGATGCTAAAGTTTAGC
CTGAAACTGCTAGTTGAAAAAGTGTTGGATCTCTCATGAAAAAAGGTTTCCCCTTTTTGT
AGTACAAATCAACCAACCGATACAACCAACGATAGATATGGTGGGAGAGAAGCAGCACAG
TCATGCGCAAAAGAAATGAAAGAGAAAATACAAAAGGAACAAATGCCAATAATGACAGAT
GGACAAAAACGAAGAAGCCTCGCGACCACTGCGCCCACCACAGATCTCCCACCAAGCTCC
AAGACTGCGAAGCACTGGTACCAATCAACATCTTCAAGAAGGGACGCCACGATGTCGACG
CTATTGCCAAGGGTTTCCCCTGGTACGCAGCGAGGAGAGAGGGAGGGTAACCCCCAACGC
CCTCCAGCAAGGTCCAGCGGCACCCTCATTCGTCACTGCGTCGGTGTCGGCCAGGTCGAT
AGGTATTTCTCCTGATGCAAACCTTCACCTCGGGCGCTCCAGAGCTCGCCACCAAACCGA
CCACCGCCTTGCACCAACACGGTCTTGAAGCTTCCGTCGTTGCCTAACCACGACACCGCA
GTAGGACCTGCACAACGAAGAAAAGGAGCCGGGACTGAGAGCAGCCGCACTGTCAACACA
CGGAAGGGCTCAACCTCCCCGTCACCGACAGGATCTGACCGGACATAACAACAGGAGTAT
ACCAAGCCCGTGGGCCCACATGCCTGAGCAGCCCTGAAATGCCCGTGAAGCTCCCGCTGT
CGTGCTGCAATGTTGGATCTCTATATATAGTCTGTTCTCTATACCACACTTAGTGAGGTG
TGAAGGAGAGAAAGAGAATACCACACGCGCGCTCGCTCGCCTCTCCTCACCGGGAAATGT
TTGGACGCGGGCTCTGGCCGGGGCTGGTGTGACACGTACGCGCGACATACGTGTGAATGG
TCCACCGAAATTCGGTCGGTTGCCTTGCACGAGCGCAACTTCCGTTTGCCATTTATTTTT
TTGGTGTCTTGATGGACAGGTTCATTGTTTCCTTGTCCGGTAAGTTTGACTTGGAAACCA
AGTCAATTTCAGATCATGATCGCGACACGATACCACCTCTGGTTCTCCTTTATATACTGC
TTATGGACCTTGACCAAAGACACACCAAAAAACACCTAGGGATTTGCCTCATATCACAAC
TTTCACCTCTATCATACTATACTCTATCCCGAACGCTGACATGCATCGATGTGCGAGAGA
GTAGGTCTTTGGAACTATTTGTCCTTGTGTTCCTACACAAGGAGGGGACAATTTAGGTTT
TTGGGAAGTGCTCTGTGCGACTGCTTAAGTTCGTCATCACGGGTGATCTTCCTACCAAGT
CGGACAGTGCTACTCATCGTCCTCTATAACAGATCATCGCGAGCATCATCATCAACAACA
TCGCTCCTGCAAGAGCTAACGAACAATACGTCCATCGTGATATCTTCATGTCTCTATCTA
TAGTTGTTGTTTCATCTACGGTCGTGTTGTGCATGTTTACCCGTTCACCTAATATGTTAG
ATTGTTGCATGCTAATTTTTGCTATAGTCATGAATTTTTTATTGGAATTAATCTTGAATT
TACCTAATATTTCAACAACCCAAAAACCTAACTGTATGCACTTTCCCAAGTTATCAATGA
CTGGATTCATTGATGCACTGAGGCCGAATAAGTTTATCGATGTGCACTTTAATAGGTGGC
AAGCGAGGACCACTATTTGGCTTACTGTTGTGATAGTCCAAGTTAGTGTCGGCATGTTAG
AGGGAGCTTGAGATGAAAATGAGAGAAAATTTTAGGAAGTCAACACTATCTTTGTAGGAT
GTGTTCTGAGTGTTCTTGTTGACCATCTTTGTGATGTGTACATGCACATACAAGATGGGA
AGACACTGCTGGATGCACTAAATGCTAAATTTGGTGCAACGGATGCAGACACTGAATTGT
ACACCATGGAGAATTCCCACGACTAAAAGATAGTGAATAACCATTCTGTGGTTGAACAAG
CTCATGAGATACATTGCATTGTGAAGCAACTGAAACTCCTTAAGGCCTTGTTCGGTTGTT
TGAGAATTGAAGGGGTTTGGAGGGGATTGGGAGGGATTAAATCCCCTATAAGTCAAATTC
CACTTCAATCCCCTCCAATCCTCTCCAATCCCCTCCTTGTTGGGATTA