morexGenes - Barley RNA-seq Database

Contig contig_48312

Source Contig contig_48312

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_48312 (4563 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_48312

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64053	1	1467 bp	MLOC_64053.1	Available	Available	LOC_Os07g12890.2, FRAME:+3, EVALUE:8e-153, 13107.m01340 protein metal cation transporter, putative, expressed

CDS Structure of MLOC_64053

Contig Sequence (4563 bp)

>contig_48312 4563 assembly3_WGSMorex_rbca.fasta
TCTTTTAAGAGATTTCACTAGAGGTCTACATACGAAACAAAATAAGTGAATCTATAGTCT
AAAGTATGTCTATATACATCCGTATGTAGTTTACTAGTGAAATCTTTACAAAGACTTATA
TTTAGGAACGGAGGGAGTAGTACAAAACATGTTTTGAAACTCAGGGTAAACCGTCATGTG
TGGTTAGGCCACTCTGATGAACTTCAATTCATCCGTGTAAACATTATGACGGTCTAATAA
AAGCTTTGCTGTTTGCCTCGAAAAGAAAATCAAATAACCACCATAGTCCAAGACAACTAC
GAACAGCGCTTGCATGGTACCGAAATTACCTCATTGGACGGCAGAGTGTCGTCATCGTGA
GTAATTTCCCCGATAATCAACACCCAAGTAAACCAGGGAAACAATCCAACGGTCAAATCG
AGCTCGCCTATATCGCGGGCACCCTTTGCTTCGCTGTACATTGTCATGCATGTCGTCACC
TTGTGACAGAGACAGTCGTTTTCGCCTCAACCGATCGCCTATAAACCCTAATCAATGGCG
ATTCCTGGCTGCAGCAGAGCTGTTCCTCACTTCATACGTCTATATAAACACTCCTGCAAC
CACCGTAGCTAGCGTCATCGCCCACTCGCCGCGGTACGTGCATCACGATCGACAGCCCAG
CCATGAAGCCGAGCGCCGCCGTCCTCCTCGCTGCCGTAGTGGCGCTGCTCCTGGTCTCGG
CCGTGCGGGGCGGGGACGACTGCGGGTCGCCGGAGTCGGCGGCGCACGACCGCGCGCGGG
CGAGGCCGCTCAAGATCGTGGCCTTCTTCTCCATCCTCATCTGCGGGGCGCTGGGTTGCT
CCCTGCCCGTACTGGGGCGCCGCGTGCCCGCGCTCCGGCCCGACGGCGACGTCTTCTTCC
TGGTCAAGGCGTTCGCGGCGGGGGTCATCCTCGCCACCGGGTTCATCCACATCCTCCCCG
ACGCGTTCGAGAACCTCACGTCGGACTGCCTGCCCGCCGCCGGGCCGTGGAAGGACTTCC
CGTTCGCGGGGCTAGGAGCCATGGTCGGCGCCATCGGCACGCTCGTCGTCGACACCGTCG
CCACGGGGTACTTCACGCGCGCCCACTTGAACAAGGACCGAGCCCACGGCAGCAGCGCCG
CCGTGGTGGACGAGGAGAAACAGGCTGCTGCTGCTGCTGCCGCCACCGCCGCCAGCGAGG
AAGCGCACGAGGGACACGTTCACTTGCACACGCACGCGACCCACGGCCACGCCCACGGGT
CGGCGGCGCTCGTTGCGGCCGTTGGCGGCGCCGAGGACGAAAAGGACACGATCCGGCATC
GCGTAATCTCTCAGGTTGGTACGAGTCATCGCGTAATACTTGGAGAAAACTTAACAGATT
CTTGTACCCTGTTTCCAATCTTTTTGTGACGATCGATGATGACGATGTTGTATTGTATTG
TATTGTATAGGTTCTTGAGTTGGGTATTGTGGTGCACTCGGTGATCATCGGCATCTCCCT
CGGCGCGTCTCAGGACCCGGAAACGATCAAACCTCTCGTCGTCGCATTGAGCTTCCACCA
GATGTTCGAGGGAATGGGCCTTGGTGGCTGCATAGTTCAGGTATACATGCCCGTACTCCC
CTCACTTGTATGTTTAGATACAGTCGTTTGAACGACAAATAATATGAATTAAAACGAGTA
CGGTATTGTTTTTAAAATTACCGGCTTTGTCACAACTTCCTTTCTAAAAATACCGATTCC
AATGTAAGACACACACACACGCACACATGCACACATGCACACCATCACAACAAATACACA
CGCACACACAACGCCTACTGAAAGATCAGGTAGAAGTTGCGGAGCATTACTAATAATCAG
AGTTCTTCCGAAATGAAGTTGTAATACAAGGAGAGCAATACATATATATATATAGAGAGA
GAGAAAAATTCTGCGACTAATCTCAAACTATGTATCTTGATCAAAACTTGACCAGTGACT
CGATCGTGGAGTGCATGTCATGCAAAGAAGCAAAGGTGCTACTATTTGCTTTGCCTATTT
CTGAAAAAAAAGAACAATAGGAGCCTTTCTATGTCTGAACCTTTTAACGAATGGCTGTAT
ATGCATAACTGAAACTTTGCATGCATGGTCTCCATCAAAAGTGGAAATGCCTATCTAAAC
AAACACTGGCTAGTATTTGTGCTTCGGAAAAGGGAGAATTCTATTATGCTATTCCGTGTA
AAGATCTACTAGAGAACCATATATACACGCATATCTAGATAATATATGTCTGGTAGTCAC
GAGAGACAAGAAAGTACAGCAGAGCACTTCGGGTGGCCTGCAGAACAAAGCAAACGAATC
AGTAACTGCATATGTCATCAGATGTTTGAGAACAAAAAAAGATCCACTTTAACAATAAAG
TGTACACCAGTCACCAGACCATGATTATTAGTGTACCATTCTGTTAATAACCTGATACGA
TGGAATTTGGTCCTGATTTGTTTCTCACGATGATGCAGGCAAAGTTCAAGGCCAGGTCCA
TAGTGACCATGATCCTCTTCTTCTGCCTGACAACGCCGGTGGGCATCGCCATCGGCTTCG
GCATATCGAGAGTGTACCACGAGAACAGCCCGACGGCGCTCGTGGTGGAGGGCAGCCTCA
ACTCCGTGGCGGCCGGGATCCTCGTCTACATGGCCCTCGTCGACCTCCTCGCCGAGGACT
TCATGAACCCTATGGTGCAGAGCAGGGGAAAGCTGCAACTCGGTATCAATGTCTCCATGC
TGGTCGGTGCAGGCCTCATGTCCATGCTCGCCAAATGGGCCTAGTCGGAAGCCGAAAACA
TGAAACAGTTTTGCTCCATGACATATGAATCGAGAGGATGTTTATAACTTTATATAGACT
TATGTATATTGGATCGTCGAGGTTGAAACGATGTGATCTTGGCACATATTCTTCATCACC
CCAAACTGGCAAGAGCATGGTTAATAATATAGCCGGCTGCTGCCTATAAGGCTATCTATA
GCTTATCTTATAGTTAACATGTACAATATTTGATTAAAAAAATGTATCATTATTTTATTA
TATGACACATCTTTTAATCTCACAAAGTGTCTAGAAGCACGTGCTAAAGGTAACTCTTAA
GTAAGGACCCGTTTACCTTCTCTTTTTCCTTCTATTTCCTTCAACTAAACAAAAATTATA
TTCTTTATAGTCAGTTAACTCAACTCTATTATACTTGTTCTAATGTCAACCCAATAGTGT
AGCATCTAAATTAACCTGTAATGTACGTTTTGGACCAAGAGTTTGGACGATGCGAAAAAT
ATGTGTGCTTATAACAAAGGAAGTCTACATTTTTTTTGCGGGGTTACTTCACCGTAAAGA
GATCGTAGTTAGATGTGTGACGTGTTAAAATAAATTTTAGAGCGACTAAATAGCAAGTTT
TTTGAGTGTAACACAACGTTAGCTCCAGTGGCCGCTGCTAAATATTACGTGCGCGAGCCA
CGCCAACATGCGCTGTAAAAAAGGGCACGCGCGAACAACCGAAACACATATGGACAATAT
TTGAAAAACAACATATAGATAATATTCAACGATACAAATAGCATAGTTCAACCGAGCACC
ACAAACTAGTCTACGATACAAGAGATAAAGTAGGGTTGGAGATGAGATGTTAATCTTCAT
TAACTACGGTGCAAATAAACTAGAAAATACTCTGAGTCATCCTCCTCCTTGGTGGTGTCG
TTTGACGTCGACAGAAATGCGTCTTCTCACCACGGATCGTCTTCATCAAAGAACGACGCA
TGTCCCAAGTGACACTGCGGTATCGCTAGTGCATTCCGCCGGCGCCTTTTAATCTTTTGG
CATAACTAGCAAATAACTCGTTATACCTCTCATAACTCTGTAACCTGATTACGTTAACGA
TAATGTTACTAGTCGTGCAGCCAAACACCTCCTAAGGCCTTCTACAATGCAAGATGTTGT
TCTTAGTTGAACTAACAACCTACTTATGANNNNNNNNNNNNNCAAGCATCCGCAACTATC
AAAGAAGAATTAAGAAAAATCTAAGCATAGCGTAAAACATGTGGATACAAATCAGCTTCT
TATAAAGCAACGCATAAATTGGGGTTTAAGTTTGTGTCACTCTCGCAACCCATCATCTAC
TTGTTACTCCACAATGACTTTTCTTAGGCTCATAACATGATGAAGTGTCATGTAGTAGAC
GTTCACATGACACCACTNAGAGAAGTAACAACATCCATATCATATAAATATGGAACAATT
ACCAACTTTATATGATTACTCATAACAAGACTTCTTCCATGTACTTAGGAACAATAATTA
CTACTCACACATTATCAACATGTTCAAGATCAGCGGTGTAATAAGAATAATTAAGGATCT
GAACATAATATCTTTCACCAAGTAATCCANNNNNNATCAACTAAAAGATGTAATCAACAC
ACCTAGTAACTCATAGGTACCAATCTAAGGTTTGGAGACATAGATTGAATACAAGAGATG
AACTAGGGTTATAGATGAGGTGCTTCTGATGAGGATGTTGATGAAGATTGGGCCTCCCAC
AAA