morexGenes - Barley RNA-seq Database

Contig contig_48303

Source Contig contig_48303

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_48303 (4144 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_48303

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64044	1	337 bp	MLOC_64044.1	Available	Available	None
MLOC_64045	1	1670 bp	MLOC_64045.1	Available	Available	LOC_Os02g20720.1, FRAME:-1, EVALUE:4e-122, 13102.m02319 protein MBTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain

CDS Structure of MLOC_64044

CDS Structure of MLOC_64045

Contig Sequence (4144 bp)

>contig_48303 4144 assembly3_WGSMorex_rbca.fasta
CTGCGACAATGGCGAAGATGATAGGTAGTAATATGGATGAGTCGTCGTTGGAGACGTGCA
AGGATTTTTTTGTCTTCCGTTGCAACGCACGGGCACATTTCCTAGTATATATTCAGGTGG
AGAGCTCCCCCACCACCCCGGTGAGTTTTGAAGGAAAAAAATGCGCGAGATGTGTACACG
GAGATGGTGAGATTCACCTACCATGGCAGCAGAGATCTTGCAATGCTCTGCCATTCTAGA
CGTGGGCTTGCTGGCATATAGCCTGGAGTAGGATGGAAGAGTTTTGCTGCATCTACCTAT
AAATATGGAGCAGGAAAGGTTTTGGTAAGCGCACTAAGTTAAAACGAAAACAGTGGCTTC
ACGAAGAGACTGCAAACGAAGACAGTGGAAACGAAACGAACCATTTCATCTGCCGATGCA
GTGAGTGCAACATTAATGATTTTCCACGTCGGTCCATGTGACCTCAATTTGACAGTCAAA
TCTTTCAATGCACAAACATAACTTTTCATATGCCTAAATAAAAAATAAAATTTTCAGCAG
CCAGTGCTTCACCACTAACAAAATGGCAGGGCGCTTTGTTGTGAACAGAAGTCAGTAAAC
AAATAATCAACTAGCCAGATTGGTGTTCGCGGACCACAAAGTATGTGCAAGCGATTTGCT
CGTCTTGATCATTTGGAACACTCGCGGACCACAAAGTATAATCCAGCTGAACGTGTTGCA
CCTTGCAAATATGATTCAGAATTTTGGGTGGGCAGAACAGCAGGTAGAGGGGCGGCATAC
CAATTGAAAGAAGTATAAATCCAGTTGAACGCACCGACCCGAACGAATCATCATCCATAC
TAACAATCACAATTTCGTGATCACGTTTAGCACCCATCTTAAGAAACTCAATTTTGGAGA
GTGTTTTCTCTGTAGTGAACCGAAACAACTTTTTTCCCTCCCACAAATTTATCAATACGA
CAGCGACCACGTTACCTTTATCACTAGTTTCCGGTTAGCCGCGTGCTTACGTTCCATTTT
TCTCATAGCGCATGGTATATTTAGCAGAAAACAGAACCACAACAGTTGTGCTCAAATGAA
AATTACAAAACCCCTGTTTTCCACTGCAATCCCTTACAAACCATTTTTGCTGAAACTGGA
CCTGGAGAGGACACCCCCCAACATCATAACAAGCACACAGCTGCACTACTGCCGATATTC
AGAACAACCTCCCTCTCCACATCAAGCAGTGCAGCCGTGTACTCCTCCATGCTGGATGGT
ATAGTTATGCTGTTGGGAGCCATTTGGCCAAAATATTCACTGGATGGTATAGTTATTTCG
GTTTGCATTTCAGCCATGCACAACAGCATAATAACGACCAAAATATTTTGGTTTGCCAAA
GGACCAAAATATTCACTTGAATTCAATTAAATATTTGAAATTTTGTAAAATATTTGAATT
CTTGTGTACTACTAAAATTGCTGAAAATAAAGTGTCTACTGAAATAACCGAAATCCATTG
AATTTCATTAATATCTCACTGAAAGTGAAAAACATGTTCCACATACATGAGCAGGGGATA
ATAAAGATTCTACTCCAAACCGAGATGTAGCATAATATCATTTGGTACTAAAATTTGGAG
TATAATAATGGTACGGAAAGCATTACTTCCACATTGTCATGATAATATCCTTTGCTGATG
TAAATTCAGCCGGGATGATTCTAGCTATCAGCTCCTTAAGAACTGCGGGGCAGCTGGATT
TCAGATGCTCATACCCATCACTTGACATCATAGCATCCAAATTGGACGGAGAAGCAAGGA
ACTGCAAACAAGCTTCTTTGAGACGACGGAAACCATGTTGCTCAGCCAAAGCCAAGCTGG
TAGCCACCATGTTGGAATCAATGTGACTGCACAATTTGTCCTCGCATATCACCTTCAGCC
TACCGATGTTGTACCTGTCAGCCGCGACAAGTAGATGGCCAGCCATCACCACATCAAGCA
CCGGAGGAACCGAGTCGGTGTACATGAAATGGAGCAAGGACTCGAACACATCAGCTTCCA
TGTCACGGATGACAATGGTACTACCGGAACTCTCCTCCATGGCGCCGAGGAGCTCCGCCT
TGAAGACAGACGACCGGGCAGCAACGACACAGCGATGAGCAGAGTATCTCTGCCCGTCGA
CCTGAAAGGTCATGTCCGCTGCATCATTGCTCTTCAGGAGATCGCCGAGATGCCGGTGCA
GGTCGCTTGGAGGAACCATTGCTTCTTCGATGTCCTTCATAACGGTGACATCGCACCTGA
TGGTGAGACAATCGCCTCTAAGATGCGCCGATCCCTCAAGCTCAGCCTTGAGGATGAAAT
CATAGTAGCCACAGGTTGGAGCTTTCCTTGAGAAGGTGTGCACAGGGGCGGTACGGGTGT
ACGAAGGCACCGGATCACCATTCTTGTCAAGCACATTGAGCGTCAGTTTCGCCTTGGCTT
GTTTGGCATCGGCCGATTCATGGCGTACATACAGAGATATGAAATCGTCGCAATTCTTGG
GGCAGCCGTTGGGGTAATATTTGACGGTCCAGTCGTGGCCTCCAACACTGAAAGGGGTGG
AGGTGGCGAACTGGCCGTTCTTGAGTAGCCCCTTCATTCTTGAGTATCCATCTATCTTGA
GCACATAAGATCTCTCCACAGATTCGGCTACCATGGCAGCAGGGATCTTGCAGAGCTCTG
ACATGCTGGGGGCGGGATTGGATTAAGATGGAAGACTGGCGAGAGGAAAGATCTCTACCT
ATATCTGTTCCTTCTCGGCGCCGTCCGGTGGTGTCGCCCGAAGCACGGCTGCCGCTGGAG
CTTGGGATTGGAGGATCTGGCGACTAGCGGTAGGGTGTGGAGAGGGAACGCCGGGGCGTG
GATTTGGGAGGGTGAAGCTCGACGGCCGGAGCGGGTCGCAAGCAGGGAGAAACTGAGCGC
GGCGGCGGGAGCGGAGGGGATCGGGGGGAGAGACCGCCGGAAAAGGGGTGGCGGCGGAGC
CGAGAGGAGATTGTTGCGTTAGGTTTTCTGCTGATCGTTTTTACCTGGGGATGGGATGAT
TCACCCCACTTTACAAGGGGCTGGATGATTTGATCCAGTGTTGTTTCAATGACCGGTGAC
TCCGGCCCCATCCGGCAGCATTTCAGGGAAGGCAAATTATAAATTGGAAAGTAAAGTGGG
GGCAAAAGATTAAGGACGTCACTAGGCAGCGGCGCCGTACCCAGGGCTTTCCGTACGGCG
GCCCTACTACTGCCAAAAACCACGAGAGTTGGACCTAAAAAGGTGCCTCCACCATTGATT
ACGAAGTATTCCCCACGGTCCTAACCATTTTCATCCATTCTGTGAACGCTATGATAGGGT
ATGATATGGTGAGATTAGATTGCTTCCATGCAGGGAATCATAAAAGTACAAAAAAGGAAA
CCACTGCATGCATGCAAAGCCTGATACACAAAAACTTTTATCTCTTAAACCGTTAATTCG
ACCGATGATTCGTTTTCGCCGCTGACTTTGTTTCGATGAAATCTTCAAAACTAGATCCCA
TGTCGACATGTTTCAGTAACTTTTTTTTCTTGTACTTACCACATTTGTTGTACTTGTTTG
TCATATTAGTAAGTACTTACTTGTCTAATAAAAAATAACTTAATCGCCATATTCTTAGAA
ATTATGAATAAATATGACATCTCGACATAATCAAACTAGCAAGCACAAACAACTTTTTCT
AGGCGATTACGCGTAAAAATATGACAACTCAACATATTTAAAACTGATGACCATAAGAAA
TACTTTTTGGTCATCGTTTGTAAATATGTCAACTCGGCATAGTTAAGCTAATAAGCACAC
GAAATAGTTTTCTCGCAAAGTTGTATGTAAATATGACAAGTTGGTATATTTTAAATTGGC
AAACACAACCAATGACATGCTTTTATATCATGTATAATGAAATCTGTTACAAGGCTTTTG
TACGAAACAACATTAAAATGTGATAATCAAGTTATTTTTTAAGGCAAGTAATCGTTAATA
ATATGGCAAGTGGGTCAAAAAATATGGCAAGTATGAACGAAAAAAATAGTTGATAAAGCA
TATCGATATGGGATCTAGTTTCGAAGAACTCGTAGCGAGAAAGCTGTTGGAAATATGCCC
TAGA