Contig Data
morexGenes
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Map Locations of contig_48302 (4113 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_48302

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64043 1 2188 bp MLOC_64043.1 Available Available LOC_Os10g32640.1, FRAME:+1, EVALUE:3e-17, 13110.m02851 protein retrotransposon protein, putative, Ty3-gypsy subclass





CDS Structure of MLOC_64043






Contig Sequence (4113 bp)

>contig_48302 4113 assembly3_WGSMorex_rbca.fasta
TGAGGAGAGAGAGGACTAATGCACATTTTAGTAAGGGTACCCTTGATTAAAAGATATTAG
CCTCAAGACTAGTTTTAGCCTCTCTTTAGTCAGGGGTGATTGGAACTTTAGCCTCTTAAA
AAAACTAGTTTTAGTCAGACTAGTTTTAGTCCCTTAAATCCAAGCACCCTCTGACTCCAC
AAAACTGCCAGCCTTGCTTAAAAGCGAAGCTAAGTTTAAGCAAGGCTAAGTGCATATGCT
CCTTGGTTGCGGCGTTTTTGGAGATGAGCCCTGTGAGGAACTCGGATCTAATCTCTCAAA
TTCGGATGAAACCTCTCAACTCAGATGAAACGGGGAATTCGATCTAGGAATTTGAATTAC
ATAGACGCGTTCCACCCAACCTCCCAACCCCCCTCACGTCAGTCATCTACTTTACAGCTG
GGCCAAGCCGCCACTACTAGCGAAACCCTAGCAGTAGCGCCGATTTTTGGAAGAATAGTA
GCGTACGGCGCTACAACTAATTCTACTGCTACAACTACCTTGCAATAGCGTTTGCCGGTC
CATCACTACAGCTAACATGTAGGAGTAGCGTTTTTTTGGACCTGCATTCTTGATAACCCC
ATGCTGCTGCTTCTGGTTAACCATCGCTACTGCTAACATTAGTTGTGTTTTTTTTCTGCT
GCGTATTTGCATGTATTTTTACAGGTTTTATACAATAGTCTAATCGTATCACAAAAATAC
AAATATTCTCATCATATTGTACACATAATAATCTCATAAGAATATCGTATCGCAAATACG
TAGGCGGTGCTGCCCGTGCTCGGTTGGAGCCTTCGGCTTCGGCAAGAGCTCTGGTGAAAG
ACCGGCTTGTCTTTCCGCCACCGCCTTCCTCAGCGTGCATGGATCGCCTCCCCCTCTGTG
ACCCGGCCAGGCGACCGCGGGAGAGGAACAAGGTGATCATGGCCTCCCCGACGCTGGAGA
TCAAGGAGCACATCCTGCGTCAGCACGCCATCACCCTCACCGCCACGGACCGCTCGCACT
CCACCATGCTTGCGGCCTTTGGCAGGGTCATCTTCGAGCTGCTGTCCACCCCGCCGCACC
AGCTTCGCGTCATTGCCCACTAGATGGAGGCCTTCCTCGTCCATTTTGACCTCCCTGTGC
ATCGGGACATTGCCGTGCGCCGTGGCGTCATCAAGGTCAAGGGCTGCAAGTACTTCATCA
GGGTCTAGCACGAGGAGGACAATATTGCGCTCCTCAAGTGCAACCACCATGTGCGCGTCG
TCGTGGAAGACCTGCTGATGCAGTTCTGGTCCCTGTCGGGCGCCAAGGAGGCTCTCGGTG
ACGTCGGCCGTGTCGACCGTCTGGACACGCGCACTCTGGAGTGGGGCCACACCAAAACCT
TCGCATGCTGGCTCTGGGTCTGGGATGTGGCCCACATCCCGACCAAGCGCGCTCTCTTGG
TGCTCAAGTGGTGCACCGGCCGGGCCGACGAGATCATCAGCCTCGCGCCCTTTGATCGCC
GCATCCCTCCACCGTCGGGCGTCCGATGCTACGACTTGCTGATCCACGTCGACTTGCTGG
AGGATTGGACCCTGTCGCCGCGCTCCTCACACTCAGGCCAGAGTGGTATGCCCTCCTCGG
ATGAAGACGACGACCGCCCTCTCCCGCGTATCGAGCCTGGCACGTGGGTGGCTAGCATGG
AGGACGACCAAGGCAGGGCTCGCAGAGGTGCGCCGCGCATCGGGGCTGCGGGTTGTGTCC
CCTTGCTCGGGAGTGGCGGCAGAGATCAGGAAGATGGCGGCGGCAGTGGCGGCTTGGGCC
AGTCCTGGAGGGACCGCCTTCTTGGTCGTGGTTGCCACGCAAAGGGAAAAGATGCAGACG
TCGTCAAGAATGCGCATCGCCGACGTAGCAGGACTTCGGTGACAGGTGGCCGCGGCCGCT
CTCAAGCTGGGAAGGACGTTGGTGCGCTGGTGCTGCGTGCCACACCGCCCCCCCTCGGCC
TTGTGCCCACTCCGCAGGTCGAGGAGGACCCGGCCCAGTTCTTTTCCTTCTCCGGCACCG
GCCGCGCCCTCTCCCCGCCCCCGCGCACGGACTGCATGCAATTGGAGATGGAGAATGCCA
TGCTCGAAGCCCTGGACACCCCTCTGGATTTTGAGGATGGTGGCCGCTCCCCTCCCCGCC
TGGACGCTGGGCCCTGCCGAGCTGGAAAGCCTGGAGATGCTTCCGTGCCTGCTGCTCTGC
ATAAGCTCCCCCGCAGCAGCCACAATAAGCTTTCAGATGGAGGTAGTCACTCAGAGGGTG
GGCACAATTCAGATTGGCAGTAGACGGGAGCACGCAGCCGAGCTGTTCGCCGTGGCGGCC
CCTCTGGTCCTCCCAAGTCAGCCACCTCATCCTCGACACTCTACCCTGCTCTAGAGCCAC
TTCAGCACCCTCTCGCCGTAGCGCACGTCAGGCGACAACGGCCAACACAACTCCAGTGGT
GCATCGGGCTGTTCTGCGCCTCATCTAGGAGTTAGGGGAACTTGGCCCTAAAGACAAGAT
GACTCCAAAGACGGCGACGCAGCTCATGAAGCGTTTCCAGGATCCCCTCCCTGATGGTGA
CATTGCCGCGATAGCAAAGCTCACAAGCCCCGACCAAGCTGTTAGCATGGCGAGGCTTGC
TGAGGCTGAAGAGATTTTGCATGGTTGATGATGTTAGTTGTAGTTTATGTAGCTAGGCTC
CGCCAGTGGCTGGTATTCCACTAGTTTGAGTTAGGATTAGTGTCTATGTGTAGTTCTTCG
GTCCCGTGGCTTGTTAATCGACGATGGGGTTTTGGGCGTGTTGGTGGCCGTCGTCGCCTC
CTCGTGTGTTGGGTGGTGTACTCGTCCTCTTTTAGTATTATGTTCGGTTGGTGGAGCAAT
CTCTAGTTCCTTGATGAGCCACATCAACCTAAGATTCATGTTTCGGAATGTGCGAGGCTT
GAAATCCCAGCAAAGCATACTGTGAGTAGCGACACTGCCTTCGCACATAGTGCAGCCGTG
CTTTGCTTGCAGGAAACTAAGATATAATCCTGGTCGACGGCTTTAGCTACAGAGGTAGGA
GGGCATAGGCTGCAGGGATGCGTGTAGCTGTCGGCGATCGACACTAGAGGAGGCGCGGCG
ATCTTCTGGGACAAGAACTGTTTGGTTTGAGAACCAAAAGGCATGGCATATCATGGCCTC
ATTCTGAAGGAATGGGTTGGTTCCATTCTTGTGTTCGGTTGAAGATAAAAAATGTCACGG
GTTCGTTCCATTCTTGTGTTTGGTTGGAGATATGAAATAAGAAGAATATGACTCAACTCA
CCTTGTGGGGTTATTCTTTTTCTTTTTATCGAAATATTATATAAATTCCAGCAACATTTT
CATTGTATTTTTGGTTTTAACAATTAGCATGGGTGTTTTCTTTTTTCTTCTATCAACAAG
AGAAGAATAACCAGGTGATTCCTTCGATTTGGTGGAATCACTTGATGAAGCATATATAGG
GAATATTCCTTTTCTGAGGATCACCCGGTTCCGGTTCCATCCTCAACTAAACATTGGAAT
GGTGGACCGTGGACGGAATCAACCCGTCTCGTGCCACTATATCCTCAAAGCAAACACACC
CTTAGTCGACGTAGTTTCTCATCGATTAGGTAGTTTCTCGATCACCGCTAGGATAAAGGA
GCTCCACTCTGGGTTTTACTTGTGGATGACAACCGTGTATGGCCCGACGGACGACACATA
GAAAGACAACTTCCTCTATGAGCTTGCGGCAACTGCACCACCTGCGGGAGAACCTTGGAT
GATAAATGGCGATTTCAACATGATCTATCAGGCAAGAGACAAAAACAACTCAAATATCAA
CAGAAGGATGATGGGGAAATTTCGTAGGGCTATTGATCTCGCGGGCTAAAGGAGATCGAG
TGCAAAAACCATAGATTTACGTGGAGCAATGAGAGGGAGGATCCTACACTTTGCAGCATT
GATAAAGTTTTCTACAACACCCAGTGGTAAGAGCTTCACTCAGAGCATTTGTTGGTGGTG
GTCTCCACCTTGTTCTCGGACCATTGCCTGCTATTACTGGTGGGGAACGTTGCATGGGAA
ACAAAAGTTTTCCTACGCACATACAAGATCTAT