Contig Data
morexGenes
Links



Map Locations of contig_48289 (4836 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_48289

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64029 1 4122 bp MLOC_64029.1 Available Available LOC_Os11g01836.1, FRAME:-2, EVALUE:0.0, 13111.m00099 protein pentatricopeptide, putative, expressed
MLOC_64028 1 403 bp MLOC_64028.1 Available Available None





CDS Structure of MLOC_64029






CDS Structure of MLOC_64028






Contig Sequence (4836 bp)

>contig_48289 4836 assembly3_WGSMorex_rbca.fasta
CGCCTGGCGCGCCTGCCGCCACGCGGAGAGGGGGTCCTTTCCGTTTTTATCGCCTGCATG
TGGTCTTTTCTGGCAAATGCGTTCGAGAGGGGGTCCTTTTGGACAAAAATTCCAGCAGCT
AATATACACATGTAGGAGTAAATTTAATCCGTGTGTATAAATTTACACGGGTTCAAGTGG
GGCCTTATAGGTGAAGTTATATAGGGAAATTGCTGGAGATACTCTTTGATGCCCTTATGG
ACCTGAATTTCAAGTGGCTAGATCTTGAATGATAGAGCTCGGATATCTTAGTAAAAATGT
ATAGAGATCATATTGAGGTTCTTGCTGCAGATGGACATTCCTGGAAAGCATCAAGAGAAA
TGTATTCCTCACAATAAAAAGGGTAAAAGGGCATTAGTTATGCATTCGGGCCTTGTCCTT
GAGTCATGTGTATCTGCAGTTCGTCCTGATAATGTACAGATGAACTGTTGTGAGCACAGC
ATGTAAAATATTGCAACAACTAATTGTTCAAGTTCATGCATCATACTCCACCGTTCTTAA
ATTTAAGTCATTTTAGATATTTCAATACAAATTACATACGGAGCAAAATGAGTGAATCTA
CACTCTAAAATGAATCCGTATGTAGTTTATAATGAAATCTTTTAAAAAACTTATATTTAA
GAACGGAGGGAGTAGTTGTTAGAGCCTGAACACCAGGATCTGAAAGTACTACAACAAGAA
ATGTAACAACTAATGGGGACACGAAAATTCAGCAGCCTTGAGAAATTTTAATTTATGTGT
GCGATGAATTGCAGCCGTAAACAAACCAGCACCTTCAGGCTTCAGGTTACTTATAGCCGA
AACAATTGAGTAAAAGAAAACCTCAATATGTCAAACTTTTGTGTAACTGAAAATCTAGCT
ACCTCTAGTTTACAAGTTAAAAAGTATGCTGCTAATCTTTTGTAACCGGACAACATATTT
CTACTTCTACCAGTAGTCATTGCAAGAACAGCAGGCATCTCTGAAACAATGAAATCTGCT
GTTATCCTGAACAATGATCTCCCGATGAGTTATCCTCGATATAAATTTAATATCAGTGTG
ACAGTCGGTGCAAACCCTGGTGTTCTTGATGACCCTAATGGACTCGCCTGGTCTGGTGGT
GAGAAGGCAAAATGCAATGGCAAGTTTCTCGCTGTGATGAACTAGAGTGTGCTCCTTCTC
ATTTTTAACGTCAAACATCATCACATCAGTAGTTGGTTTGTGACCCATGGCTTTGATTTC
CATGCCTAATTCATCTAGCTTTTTGTATATTTGATCCATGAGGGGATGCCAGTTATCTGC
AACATGGAACTTGTGGACCTCACCATCAAAGTCAACCCAGCTATATCCGGTGACCTCCTT
GACCCCTATCGCCTCCATGTGCAATCTAAGCTTTGCAGCATCCTTCCATCTGCCGCTGTT
AGAGTATATGTTGGAGAGCATGGCATAGTTCCCAGAGTTCCAGGGCTCTAGCAGGATGAG
CTGTTTCAAGGCATGTTCTGCAAGCTCGGGGTCTCGGTGAATCTTGCAGCCACCGAGAAG
TGCACCCCAGACGGCAACATTTGCCTGCATTGGCATTTCATTAATAAGCTGATGAGCCTC
CTTGAGCAACCCAGCGTGACTGAGAAGGTCGACCATACAACCGTAGTGCTCAATCCTAGG
AGCAATGCGGTATAACTGTGTCATGTTATGGAAGCAGCGCCGTCCATCCTGTACAAGGCC
GGTATGAGTACAGCTGTAGAGAAGGCTCATGAAAGTCCTGCCATTCAATTCCATGCCCGA
CTTCTCCATCTGGCCGACAAGGGCAAACACAGACTTATCATGTCCAGTCATGCTTAGCCC
CAAAAGCATTGCGTTCCAAACAGTAATGCCCCTCTTTCTCATCTGCTGGAACACGAACCA
TGCCTCACCCGTGCTCCCAAACTTGGAGTACATTTTGATCAACGCAGTCCCTAGAACTGG
GTTGTCAAGAAGCTGATCCCAGTCCACCACAGCAACAACCTGCCGTGCCAGATCAAATGC
ACCCAACTGCGTGCACGCTGAGAGTGCAACAGCAACTGTCTCGCAATTTGGTACCACTCC
CTGAGCTGGCATTGCAAAGAAGAGCTGGAGAGCCTCTTGCGGATGCCCGTTGGAAGAGTA
TCCGCTAACCATAGCACCCCAAGCCACTACATCCTTCTCCGGCATCCTTTCAAACACCTC
CCTCGCCTTGGCCATCTCACCGCACTTGACATACAAATCCACCGCTGCAGTTGCCACAAA
CACACTGCTCGCGACCCCCTCCCGCTCTGCAGTCCTCCACACTGCCTCCCCGGTGCCCAA
ATCCTCGACCCGGGCGCACGCAGTCAGGACCCGCGCAGCCATGAAGCTGTCCGGACGCAT
TCCACTCGCCAACACATCCCTCGCAATGGCAACGGCCTCCTTGGCACACCCCACGTCCAT
ATACGCGGTGATGAGCGCGGTCCAAGAGATTGTGCAGGGGCAGGGCATTTCTTCGAACAC
GCTCCGTGCGTGCTGCAAAAGCCCACATTTGGCGTAAAGTTTTAGCAGGGACGTGAGAAT
GTGGGGGTTGGAGTGGGAAGGGAGCTTGAGGGAGCGGGCGTGCAGCTGCTCGCCGGCTTT
GAGAGGGTTGGGGAGGCGGGAGGCGGACTTGAGGGCAACCGGCAAGGCCAGGTGGGAGGG
GTCGGGAAAGAGGGAGTATAGGTAGAGGGCATGGAGGTGGAGGCCTGAGGAGGAGAGCGC
GCGAAGGAGGAACGTGTAAAGGTCGGCGAGGAGGCCGAGCCGGAGGAGGCGGCCGTGGAG
CAGTTTGACGGTGAGAGGTGGGAGGCGGTCGCTGGAGCTGACGGCGCTGATGAGGAGTCG
GCGGGTTTTCTCGGCGGCGGACGACAGAAAAGCGCCAGGCGCGAGCGTTGTGGGAGGATT
GCGCAACTCACTTTGCACGAATTTTCTCAGGACTTCCATTATAGCCGTCAACCTAGGATG
AAAGTGGAGAGTCGAGAGACACGAGAAAGAAGACGTCTCTCGAAGCGGTGGCTCCGCCTA
CGCCTCCCGACGCCGCCGACGGCCAGTTTTCTCCTTTCTTAACTTTTTCTTTTTTGACAA
TTGCTTCAAAAGAAAAAATAACTTTTTTGACAAAAGAATCTCCAACGTAGTATAATTGCT
GGAATGAAAGAGAGAAAGCAGAAGAATAGCCCAAATGATAAACGCCCACACGTGTGTCAT
GTTTGTTGTTCACACGTATCGATCTGTGTTGATTTTGTTTCGTCCGGATTTTGACAATGT
TTAATTAATTTTGTGTGTCACGTAGGCATCATTGTGTGTGGGGGTATTGGTGAGTTCATC
CGAACGCCCATTTGCACACACGCTGCATGCGGTTGCCACCTCCGATGTGCGGTGGAACTG
CCGTGACAATAGTACTAGGGATACGAATGAGGGACGAAGCCTAGCTACGACACATGTGTA
ACACTCGAACTTAGAGAGTTTGGGCCCCTCTCGGAGGAGGTAAAGACCCTATGTCTCTTC
AAGGCTTGTGTTTTTCTCTCGGAGTGTGATTACAGCGGGGTGCTGAACCCTTACCACAGA
GCTCAAGGGTGGCTTATATAGAGTGCGCGAGGACCCGCCGAGCGTCATTACAAGGGCATT
AAATAAGAGTAACTGCTAGGGTCGTTACTAGTAACGTTGGCCTTGGCTGCACTTCATGTA
TGGTTTTAAGTCCCTTGACGTTGACGCTACCACGTCGTCCACGCTTGCCTATGTCTGAGT
GTCGGTGCTTGTCCGACTAACTGAAAGACGTTCAAGTGACTCCATGGATCCGAGTGAAAT
CTGGATATGCATAGATAGCCCTGGGACTTTAATGGCCGCATGGGGCCCTAGGTGGGCCCT
AGATGGCTGGTCCATGACCCTACTCTTGGTAGGCGACCCCATTAGTAGCCCCTGAATTGG
TTGACGTTTAGTTGATCGAGTGAAAGACACTTTGAGGTGTCTTCGGCACTTCGAAGGCGT
CCGGAAAGTAGCTCGGGGCTTTCTCACTCGGTTCTGAAATGAAGCCGTAACGGATTCATG
ATTGAAGATTTCCAAATGATCGGATTAGCTTGGAAGCTATGCACCACCCGGTAGCATTCG
GTCATCTCTCGGAAGACACATCCTAATGACTCAGGTATAGGCGAGCTAGGGACTCCGAGT
GATAGTGCAAGAGCTAGGACTGATCCTTCACGTATCCCAGGGAAACTCTTTTGATCACGT
TCATATACGTCCGAGTGAACTAGGTCCCACAGGTGGTATTCGGCGGACCGAAGCATGCTG
CTTTTGGTAAGTGGACGCGGGGTCAACTCAGGCCAAAACACCGTGGGATTATCGCGGATT
TGAAACGTGGGGGACGCGCGTACGCATGGAAGTGGTGGCGACGCGGTTAGGGGCGAAAGT
GGTGCAACACCTCGATTACCGCACCGAGAATCCTGCCACGTGCCTCAGAGGCACTGTTCA
TGGGATCTTGTGGATCTCCCTCCATTTGCTGATTGACGATTCAGGATACGCCGGTCACGA
CTATAAGAACAGTGTGTATAGAGAGAGGAAGAGTCCCAGATCTGATTCCTCTTCCTTTGT
CCCCTCCACCACTCTGCCCGATTGCTAAGTTGCTCTACCTCTCGCCACATCTATCTCAGT
CAGGCCCGACCAAGAAAGATGACGAGAAGCGCGACTGCGAAGGCCGATGGGGCGAAGAAG
GGCTCACACGGGTCCTCCTCGAGTGTCAGGGTGCCGACGGGGAGGATCTAGAGCGATTGG
ATGGCGTCACGCGTCACTGATACGTCTCCAACGTAT