morexGenes - Barley RNA-seq Database

Contig contig_48282
Source Contig contig_48282
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48282 (6575 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_48282

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_64021	2	1275 bp	AK355447	Not available	Available	None
MLOC_64022	1	119 bp	MLOC_64022.1	Available	Available	None
MLOC_64023	10	2655 bp	AK377015	Available	Available	None
CDS Structure of MLOC_64021

CDS Structure of MLOC_64022

CDS Structure of MLOC_64023

Contig Sequence (6575 bp)

>contig_48282 6575 assembly3_WGSMorex_rbca.fasta
CATGCATATCCATATAGGGCTCAAATGGTCCTAGTGTTTCTAGTTACCATTAGTTTAACG
TGTCTTAATCGGCTTCTGAACTGCAATTTCACTTTAATAGTTTCAGTTTGCAAGTGAAGT
GTTTCCATTTCTTTTGCGTGCTGATAATACTCTTATGGTTCCCAGGGCGGGCGTGGACTC
CAAGATACACTTAAAGTACATTCCAGGAAATTTCTTGGGATACTTAATGGAATCGACACA
GATACATGGAACCCTTCCACAGATAGGTATCTCAAGGTCCAGTATAATGCTAAGGACCTT
CAGGGAAAGGCAGCCAACAAAGCAGCCCTCAGAGAGCAGCTCAACCTGGCTTCTGCATAT
CCTTCACAACCACTGGTACGATTGTCAATACTGTTAAGCTCAAGTCTCAATTACTGATAA
ACTGGATATATAAAGGTTCACCCTGTGCTTGAATTTGAACATTTTCCATCTCTTTATTCT
CGTCAATTTTATTCGTGGAGTAGTCTGTCAGCTATCAGGTTCTATTGTTTGTTATTATAT
TTGATCGTGGCATGGCCCAAGTAGTCTGAAGTGAATTACAGCAGTTCCGTTTTTTGATTG
TTTTCTTCAGTTAGCTAATATCATTTTATGATCCCCTCCTGTGTGTATTCACCTCCTTTC
ATTTGTCTTGGAAACTTGATATTGAATGTTAACTAAATAACTGAATTTGTCACAAGCAGG
TTGGTTGCATTACAAGGCTAGTTGCTCAGAAGGGTGTACATCTTATCAGGCATGCAATAT
ACAAAACAGCTGAATTAGGAGGACAGTTTGTCCTTCTGGGTTCAAGTCCAGTACCAGAAA
TTCAAGTGCGTTTATGTCATAGTATATATATCTGTGCAGATATTTTGATCAGACATGAAT
CTCCAAAGTAACAGAAGAAAAACCATACTTCACTACCTCATGAATAGTTTATTTATCACC
AAAGGAACATGAGTCTGAAATAGTGTATTTTTGTCTGTATTTTCTATAAAGCACCTCTTT
GCCTATATCTGGTACAGTAAACATATTTGCCTTTTGTTTTGTTTCACAGAGGGAGTTTGA
AGGTATTGCAGATCATTTTCAGGACAACAACAATATCCGGCTGATTTTGAAGTACGATGA
TGCGTTGTCTCATTGCATATATGCTGCATCTGACATGTTCATTGTTCCCTCTATATTTGA
GCCATGTGGCCTCACTCAGGTGTGCCTTCTTTCCATACTTTGATGATAAATGCATATCAC
CTAGTTTATACTAGGTACAAATCTAGTAAGCTGACCTTGTTTAGTATGATACATAATCTG
TATCACTTGCTGAAATATATGCTTCAGTTGTCGTGATCATTTGGCACTTCTCTAGAAGTA
ATTAAACAAGTGCAAGTCTGCCTCTTCTGCTTCTATTTGATATTTGATGTGTAACCTTGT
GATACGCAATGCTGCACAGATGATAGCCATGAGATATGGCTCTGTGCCAATTGTTCGAAA
AACTGGTGGATTGAATGATAGGTAAATAGTGAACCAACCAACTGTTCTTCCAAGTATAGT
TGTCGCATCCAATCAAACAAGTATAGTGACATGCTTTGTTGTTTCAGTGTCTTTGACTTC
GACGACGAAACAATACCCGTGGAGGTCCGGAACGGCTTTACATTTGTCAAGGCCGACGAG
CAGGTGGGTCCTGTTTCAGCGCACAGCCTGGGAAGGGAAAATCATAGTCGCTAATTTCTG
GTGGGAACATACAACTCATCCGGATGTTCATTTTACCAGGGTCTAAGCAGCGCGATGGAA
AGGGCGTTCAACTGCTACACGAGGAAGCCCGAGGTCTGGAAGCAGCTTGTGCAGAAAGAC
ATGACGATCGACTTCAGCTGGGACACTTCGGCTTCGCAGTACGAAGACATCTACCAAAAG
GCAGTGGCTCGAGCGAGGGCAGCAGCATGAGTGAACACACACATGGTGGTTGGTTCCCTG
ACGCCTCCATGCTCTCCTCCCCCTGGCCCTGCCCTTCCAACACAAACTGCGCAAGATGAA
ATCATCAAGGGATCATGAAAACGGAATTATATAGGAAGAAGCTCAATGCTGTTGACGCAC
ATTTCAGGTACCAGTGCGGCTGTTATATGCGCTGTTTTATTGAAGACAGAACAGGGGCGA
AAAATGGGGTGGCTACCATGAACTGTTAAGATCGTAGTACGTGCACTGTTGTTGGCATAA
ATTGGTGTAAATTGTAGGATGTATATTTTGTCGAGGGGTTGTAATTGAACTGTATATGTG
CGGTGCAGACTGCAGAGTCGTATTATTATGCAGAAATCTTATGGTCCGTGAGATGAAAGG
AGCAAGAAATTCAGAGACCTGAACCCTAAGCATCTGTCATGTTAGAAAGTACTAGTACCT
CTGTACATAATGTAAGACGTTTTTGCAGTTCAATACATAGACTTTCTTTTCTTTGAAAGA
TATATATTTTTTCCTCTGAAGGCTCTAGCGAAAGGTTAGTCTTTCAACGAAGTCGATGAT
GATGCTCGAGGGTGGCTTCCTCATTTTCTAGGCATTGTTGAAGAGTGATTCTTCTCCGTC
GGGTCATGTCCGCTCGGAGCTGAGGATGTCGCGGTGTCTGTTTGTTGTGTGTAGCTTTGG
GCGGAAGGTTGGTCTTTGATGGGGGCGATGATGATGAAATCATCCGCTGACGCTCTCTTC
CTCTTTGGAGGCGGTTTCGAAAGATTTTGCTCGCCACTTCCCCTCATGTTGTTGGTGGTG
GTTAGATAGGTTAGGCCAGTGTTGTTCTTTTCTTCTTCTTGGATTCTCGGCCTGGTTTCC
CTCATAAACCGGCTTACTTTGTAAGTATTTGTTTGTGTTTTCTGTCTATACGCCTACCTT
GCATCATCATCATAACAGAAAAGCTGCTCACTTTAAAAAACAGAAAAGCTGCTCACTTTA
AAAACATAAACTTGTCCAAACACTCGGTACACAATGTGGGCTGTGGGGTATTTGCAACAA
GATGATGTCTTGGCATTTCTTCACCCGTCGGCGGCCAGATTTCTTCTTTCGAAACACCGT
GCAGCAGACGCTCATAACACGCGCATACACACACCCCTATAAACACACACACACAAACCC
TACCCCTATACACGCACGACAGACTGGGCCGGCAGATCTTGAGATCGAGCAAGTCCTCAA
AGGCACCTCGTAGTCGAGGGGCATGCCATACCACTAAACGAATAGCACCGAAAATCCTAA
AATAAATTTAGAAATATACGAGTACCCATGTCAAGCAGGCTGGTTCCACCACAAGAAACC
TAGCCATCTAGGCTAGCCAGATTGATGTTGTACTCAGGTTTCCCCGTCGCCTTCTCCTTC
TCCTTGGGCGCCAGGCGGCAGCGGAAGGTCCGGAACATGGGCTCGTTGGGGCACACCGGC
AGCTGCTGTTGCAGGATGTCTTGGGGCTCGAGCACCGGCGCCGGAGGGGGTGCTGGAGGG
ACCGAGCCATTGACAGCCAGCATGAGCAAGCCGCCGGGCTCGGCGGGGCTGATCGTGTAG
CCCATGTACACCTGGCCGGTGCTGCATGGGCTCCCTGAAATCCATCCGCCAAAGAAATCA
GTCAGACTGTATAAGAAGTTCATTGTGGGTCAGGAAGAAGAAGAAGAAGAAGAAGAAGAT
TTAACCAAGCGTCCATGGTGTCTATCAAGCAAAGCAGATACTACTACTACTACTTACTGA
AGAATGCTGCTGCAGTGGCAGGGAACTCGGTCACGAGCCCGTCGGCGCCCACCGACAAAG
TGTCCGTGGCAACCTCCACCAAGGGGTCGGCCCAGTAGTCGAACGCGAGGTTCATGAACT
CATTCCTGAGGACGCCGACGTACACCTGCAAGCCGCCGGCATGCAGTCTGTTGACCAAGG
AGTCCGTGAACCCCTCCAGGAAGAAGCCGTTGACCCGCGCGGCAGAGCTGCGCCTGAGCT
TCACCGCATTCGCAAACTGCAATATCTCCTCCACCGAAGGCTTGGAGGCGTCGCGGATGT
CGAACTCAATCGTCAGCACCCGCTGGAACTTGGGGAACGACTTGAACGCCGTAAGCACCG
GGGCGTCCTCTGACTGTATGAGCACGCGCTGCTTACAGGTCTCCTTGTCGTACCCGGACT
TGACAAGCGCTTTGGAGACCGCGTCCACCACGTCAAGGCCTCTGGCTATAAGGTACGTAG
CATGCTGCACTCGGTACGTACGTACAAGACCTCTCTTGATCAGTTGGACAGAATAACCAC
AGAGGTAACAGGAGCAAACAAATGAATGAATCATGTCGAAAGTAGGATGCTATATATATA
TGCTGTCAGTCTACCTCTATGCCCATCAGTATACCAGTGATGTTGCTGGCTTTTGCAAAA
TCAAGGAACTCAGGCAGTGTCACAAATTTGCCAGCGTTCTTCGCCGCAGGATTTCTCTCC
AGACGTGCGTCTGCGAACGGACCGATGAGGTTGGCTGCTCCGGTGAACAAAAAACATGTG
GCATCGATGTTAGCTAGTGTATGCAAATCTTTGGCAGAAATAAATAAGGAGTATGTCTTG
CTTCGCACGTTTTAAGGTCTGGATCTCGCTCCATAAGAGATCAAACGAGAAAATGCCAGA
CTTGTTCTGTATCTCATTGACAGTGGTCATTTTTCCCAAGAAAGTTGTAGCTGCTGTCGT
GCTGCTGTTGAGATCTGTAGAGCCCAGGCAGAAGGCGACTCCGTCTTTCGACATCCGGAC
CCAGCAATCTATTATGTCCGCGCCGTCTTTCACTGCTTGTTGGTAGGCAAGGTCGGTGCT
GTCTGAGAAGACGCCACTCGCACCATTGTGGGTTATGATCAGTGGCCTGGTGCTGTTTTC
TCCTTCTCCTGCTTGAGTGGAGGGGTCGGTATATCGTGTTGCAGGATGTTGATAAGTTAA
CAAGCGACACCATGGAGCAGGAGAAGATTGCCAGCTTACCTGGAGGAGGTCCAGCTTTAA
CAGGAGGAAAAAGAAATGGATTGCCCTTGGTATGTGCCATGCACACTGCAATTAAAGGAT
CCTCATGAAGATTTTGTCAAGGAATAAAAAACGAAGATCTAAACCATACGGGTAAGTTCC
TATCATGTATAAAGTAACATTTAGTTTTTCATCAACATCCATTCAGTTTTAGCTTCTTCC
AGCATGGCACACGTGTTTCTTCATTCTTACCCAAGGCTGCAGATGCGGTAGGCGGATTGT
CTGTTAAAACGCCGTCAACCGAGAACTCTGAATTGTCTATGTACTGCAAGATTTCCGCGC
TGGGATCATAGCTGTAGTTGTAGCTCATACAGGGATCATCATTGGCAAATCCAGATGCGT
ACACTTCCAGCCCTAGGGCATGTGCATCTTTGACCAAACTGGTAGACGGCTCCAAGTACA
TATCCTTATTCTGTGGCCAAATAAATTGCTTTGGGACAAGAATCCCTGATGCAAAGGCCT
TGATAGATTTTAGGTCTTTCAGAAGTTCTCCATATGTTCTCTTCGTCGTAGGCTCAACAA
GGTCTTCACGGAGAAACCGGAAAATCAACTTAATATTGCTTCTGACTTTTCCACTGAGAC
CTTTCAAGAATGCAAATTCTGGTGAGGAGACATGGGTGACAGGAAATTCTTTTGGTAGTC
CCACTATGTAACCTTCGCTACTTAATCCATGCTCCATAAAAAATGAGTTGTACTGAAGAA
AATATGAACTTCTATTAGACAGAGAACATGATGCAGTACAAAGAGAGCCTTGGCGAATCT
TTGAATGTTAGTGAAACCACATCTACCTCTATGTTGACCCAAATTGCATGAACCTCGCCT
TGTTGAGCCAGGACACTTTGAACCACATTGTCAAGCGACAACAGTTGCTGTTCTTTGTCA
AATGTATTTGGGCGAGACAAAATATTCTGAGACACTGAGGGATAATCAAACCACATGACA
AGTCAATACTTTGCAACAAGGGAAAAAATAAGAACAAAAAATAGAACCTAAATCGAAATA
AGAAATGACTTCCAAGGATCAACCATTCCTACGAAAAAACTTTCAAGGATCCATTTGAAC
CTTATCTAGTCCAATATGAAAAATATATATGATTTACCACTTCTGCAACTGCTAACTTCA
TCATTGAGCACGGATAAAGTACTTCAGTTTTACGGCTACGATTTTCAAGATAACCAAGAG
TATATTTTTTCTGCTTACACACGATATCATGCAGCTCCTTCGATTTGAAATCCAGAGAAA
ACCATCCTTGAACATCTTGTCCATTCACTTGATATGTCGAGCCCCTGTTAGGGAACGACT
GAGCAATATCTGACGAATTGTCAAGTCTCAAGCTGCTATGGCAGAAGCCCACACCGTCGC
TGGAGAGTTGCAGGTCGCAGAACAGAACCACATCACACACGCTACTGTGCATTGCAAAGT
TGTATGCAAGCTGGCCTGACTCAGGTAATAATCCAGAGAAGCCCCCACGAGCAACGACTA
CAGGGCGACGACCTGTAGGAGAGTACTAGAGAGATTAGCAGCACGGCAGGCAAACCATAA
TGCAGGCTGAAAGAACATACTCCCTCCGTCCCAAA