Map Locations of contig_48275 (7175 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_48275

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_64014 1 1134 bp AK353943 Available Available None





CDS Structure of MLOC_64014






Contig Sequence (7175 bp)

>contig_48275 7175 assembly3_WGSMorex_rbca.fasta
GTACTATTTTTGTAATGGAGTTAAAAAAACTTCAATAGTGATTAAACCAACAATTGCTTT
GTTTCATACATATTGAGATAATTTCAACAGCAATGTGCATACCCAACACAGGTTGCCGAA
CAGGTTCACTTGAGTGGGGACATCATGATCATCAAAATGAATGCCCATGAGTATGCATAG
AAGATTTACCGATTACAAACCAGATTTACCGATTACTGACCAGTGACCAAGATGATGCAA
GATAGATGCAAAATTCATCAAGTCAGGAAGGAAAAATGAACAATAATGTATCAATGATCC
ATAGAACTATACTATGTCCTTTTTGATTCTTAAGATAAGAAAAGTAAAGAATCGTATTTC
TTGGAAAAGAATACATTTCACAATTACCATTATCAAGATGAAGAGCGTATATTCCGACTG
GCATGTCCCTGTCCAAGGAACGAACAACCTCATCCTCATCTTCAAGCCAAAAAGCGCGTC
TTGTTCTTAATCCAAAGGCAGATTTGATGGCCTCTTTAATTGCCTCAGCAGTACCATCAA
TCCCTATTCTTTTAGTATAGTCACCCCACTTGACTAGGATGACCCTCCCACCATAAGTAC
CATGATTATCTCCACCTGTATGAGGTTTATGCAGGTTTGCACATCAATGCAACAGATTAA
GAAAAGGAATATAAATAATTGAGTTGACCTGAAAATGTTATTATTCAGTGCTATTTTGTG
TTGGTGGAGTTGAGTGTTTGTTCCATCCAAGCAAAGTTCTAGCACCTTAAAACATAGTAC
TCCCTCTGATCCATATTAACTGACGCTGCTTTCGTCTAACTTTAGTACAAAGTTGTACTA
AAACAACGTCAATTAATATTGATCGAAGGGAGTGATAAAATTTACTCGTGTTCCCTCCGT
TTGTTTTTAGTCTGCATATAACTTTTGTCTAAAGTCAAAGTATCTCTACTTTGACCAAAC
TTATAGAAAAAAATATCAACATTCACAATACCAAATCTATATCATTAGAATCTTTATGGA
ATGTAGTTTCGTACTATATATATTTGGTATTGTAGATGTTGATATTTTTTAATATAAATT
TGGCCAAACTTCGTAAAGTTTGACTTGACACAAAATTTACACGCGGAGTAAAAAGAAACG
GAGGGAGTATGTGTTACCTATCAAGTAGAAATACACTAAAACAGTAGCAGCAAGCTAGCG
GGTAATAAGACTATCAAGAGATGCTTCCACATTCTAAAAATTGCACCTATGAAGAGTTTG
TTAAGTTTATAGGTTCTTAAAATCATATTTGTCTTCAGGTTTCTTAAAGGAGCAGGATAT
TCACATAACCAGAACAAATACTAATCCAGTTAAACACCAAATTCAGTTCATCAACTGAAC
AGCTGGACAGCAGCATTCCGAATTGTTCCAGTTTCACGCTGTTGAAAATCCATAAAACCT
TATAATGTATTCAACTTTCATTGTGTAGAACCAGTACCATTAGTTGAGGTGTCTCTCCAG
TTCCATGGATTCACACCATTGGTTGCAACTGCATCAGCTGTCGTTAAGGCAATTGGATGA
CTCGCTGTAAAACAGAAACAGGAAAAAAAATCATCAGTAATCATACCCTTGTCTTCACAA
ACCACAATTGCAGTAGGCAAATATTGATGATAGAAGTTGGATTATAAAAATGCATGAACT
AAATAATAAAACGATGAGGAGCAATTCAAGTTTGAGTTAGTACCAAATTGGTCACAACGC
CATGTTTACATGATGGCGCATCTGATTTTTTTTCCTTGATTAGTGAGCTATTTGGTTTAG
ATGTCAGGTTTTTTAACGAGTGAAGTGCAACAGAGGTCCTACTAGTATACCGAGGGTGTC
AATATAGTCCTAATAGTACGGAAGTACGCATTTGTGTCCAATGCAATAAGTGAGTCACAA
AAGGTCCTACCTGGGCCAAAACAGTGCTGGCCTGCATCATAGTGGGTTGAGCACACTGCC
ACGTAGGCTGAGGGTCACTTGACGGCAAAACTCATGCTAGGCCAGATATAAAATGTCAAA
ATTTATAATCATAAATCCTTTTCTCCATCCTCCTATTTACTACCTCTCTTCTTCTCCTAC
CAACTGCTCCTCTCTCTCTCCACTTTTCCAACACCCCACCTCCTCTTCCTCCTCTCTCCC
ATTGTTGGGAGACCCTTCTCCTGTTTTTCAGCAAGGGATGCGGGCAAGATGGGTACTTCT
TTGCTCGCTGGAGCTGCAGATCTGCCACTCGCCTCCCTGAACATCACATGATTTTACCTT
CAGCTGGCCTAATTGGCAGTGGTCAACCCACCACACTTGGAGGTCAGAACTGATTCAACC
ACGATAGGACCTGTGATGCCTCACTTGTTGCATTACTGGGACTGAAATATGCACTTTCAT
ACATTAGGAGAGGACTAACTCGACACCCTCTGCCAGTATACTTATAGGATTTCTAATGCA
CTTTACTCTTTTTTTAATTATACAAAGATAATTTCTTTCCCTGCATTCTCCTTTCGAGAG
TTTTTAATCTCCATGTTCCAGTCTAAACAGTGTTAAAATTGTGTATCTTACCATCTGGCA
ATTTTGTTTAATAAAACCTCACCAGTTCTCTTTCTATAATGAAGTGCACAACTAGTGAGT
AATGAGAACAAAAAAGTTCTACAAGGCTAAGAAAAAAAAAAGGCCTCACCAAGAAACTCA
CTATTGTTGGAACATTTTTGGTGTGTTCACCCATTAAATGAAAATAACAACTGGTCCACA
AATGACTTTAGCTCAAGCTTGGTATGTTAACCTCTAGGCAGGCACAACTTTCTGACAGAA
TATTGAGCCAAGTAAGTGGAAGATCATAGGTATAAACACAGAAGATGCTCACAAAATAAG
ACACAGAAAGAAATAGGTAGCAATTATAGCAGAGGCAGAATATATTAGTACCTTCAACAG
GGCCAAATGGAATGTTGGCATCTTCAAAACCTAGATTGATAGCAGTGAACATGAATCCAT
AAGCTAACAGAAATCCAATCGATCATAAACCAAATATAAACACAAGTCCAAATGTTCAGT
TACTAAACCCAGCAGTCATTATAAGTAAGCAGACCCACCAGACACATAAATCCAAAACCA
TATCAGATAGTGCTACCTAGTATGCACCCACCGACACACAAAACCCCGAGCTGGAGACCC
ATACCAATTGCAAATATGTACTTTGCTTAGCAAACAGACTTGTGCTAACTGCTAACTGCT
AAGCATTCTCACCCCATGGTACGGGTAGATCAGTAAGCTTGAACTGTGAACTAACTTCAT
ACTACTACACAATGGTGTGCCAGTAGTCAGCCAGTGAACTGGACAGAAAACAACACTGTA
ATATCCGAATTTCTGCAGCAATGCTTACTGATAACAGCTTAAGTTGCTAGTAATTGGCGG
TGCACAGGCAACAATTAATTGATGTGTACCTAAATTTATACTGATGTATACCTAATCCAT
TGATCTATGATCAAAACTCGAGGTTGTCAGATACTACTGGGATGAAGAGTTGAAAGCCTC
TATCCATTTCAGCACGCAAAGCAAGGCCGTCTTAGTCAGAAGGATAAGGGGGAGCATCAT
ACCTTTATCCGCGAATTGCAGGTAAGACTCGATCTTGGAGGTGGGCGTGGGGCTCTTCGC
GGCGCCACCCCCACCACCACTCCCCGCGGGCGAGCTGGCCGCCTTCCCGCGGCGCTTGAG
CAGGTCGTCGATCTCCTTGTAGTAGGCCATCTTGGCGGAGCCGTTCCCACTGGCGCCGCC
GCTGCTGCGGGCGTGGCTGCGCGCCTTCTTGAACTCCTTGAGGAGGTTGCGCCACTTGTC
GGTGCACATGGTCGGGGAGCGGTCGAAGCCCTGCTCCCGCATCTTGGCGGAGATGGCCTC
CCAGAGGTGCTTGTTGGACTTGGAGGTGTTGAAGTGGTTGTCCATCTCGCGGCGCAGCGC
GATGAGGCTGAGCGTCTCGTCCTGGACCCAGGTCTCGGCGCGCTTCTTCGGGGCCGAGGC
GCGCGAGGAGGAGTCGTGGTCGTGGGCGCCGCCGTCCTCGCCGCTGCTCTCCGGGAGCAG
CAGCGACGGGGTAGGGGGCTGCGGCCCGGCGAGGAGCATCGCCGCGGCGGAGGAGCGGCG
CGGGTGGTGGGGTCCGGGAGCGAGACTGTGCTGCGTGCGTGAGGCGAGGGAGGCGGTGGT
GGGAGTGGAGGCTCACTGGAGAGCGCAGCCGGGGCCCTCTCGCCGACGAGGGCGGTCGGA
GTCCCGGAGGAGGACAAACTTATCAGAGTACGGCCCTGCCCATCCCGGCCCGGCCCGGCC
CGACCATGACCCGTATGGCCGTCGTAGCGGGCTAGTCCAGCATAGTAGATTTCACGTAGC
CCATCCCCAAATCAATTCCTCCTCACTGTCCAAACGAACCCGCAACCTCCGTGAACCTAT
TCTTTTCTTTTGTCTCAATTTTTTTTTACTCTACACACAACTGCGGTATCCATCCTTTAT
GTTAGGGTTTATCCTCCTCTCGACGGCGGCGTAAGCTTTCCGTAGAGAAATCGAATCCCG
CGCAATCCCACACCGTCATGGGGTCGTCGAAGCCATTGTCTCGTGCCAGCATGACGGACC
TGGGGTTTGCTACGGCTACTACTGCCCGCGGAAGACTGTCTCTCAGGGCGAGAGATCTGA
TGAAGAACGTGGCTTCGGGATCGGGTTCGGCTACGGTCGATCTTGAGGAGACGATGGAAG
AGCTTGGATTGAAGGAGGAAGATTTGCAGGATGTGGTGGTGGACGACGGTAAATTGACAC
ACGAGGCTACTCGCTGGATGGTAGTAGCTAGGATGCACACCGATAAACCCAATAGCCAGT
ATTGGTTCTACCGCAACATGAGGGTGGACTGGGATCTGGCGCAAGAGGTGAAAATTCGTC
CTCTCGAAGATAATCTATACACGCTCAAGTTCTCATGCCTTGGGGACTAGGAGAGGGTTA
TGGAAGAAGGCCCATGGATGTTCAAGGGGGAGGCAGTTGTGATCGCGCTTTATGATGGGT
ACACTCGTCCGTCCTCCATAGTCCTTAACAATCTGGAAGTCTGGATGCAAATCCATGACC
TGCCCGATGGCATCTTCCCCAAGATCAAGGCGTTGTCGTCAATTGTGGGAAAGTTTATAT
ATGTCGAACCTAAGTCCCATGACTTTGAAGGCCATTTCTATCGTGTTCGTGTAAAGATAG
ATGTAACCAAACCACTCAAGAATGCAGTCTTGATCATTGTTAAAGGAAAGAGAGAGATCT
TCAGAATAAAATACGAGTGGTTGCCAGAATAGTGCGCGGTATGCGGTCATCTAGGGCACA
CCTTCAAAGAAAGTGGTGACGGGTACATGACCCCAAGGCGCTAGTGTTCAAAAACTTCTG
GGCGACTTGGTACCACGGAGCTGGGTCGGGGCCTGCTGAGGGCAGAGGACGAGGAAGAGG
ACAAGGAAGAAGGGGTGACTGCTCAGGTGGCTCGGGACGCGAAAACCAGCGGGAAAGGAT
GATCTTTCAGAATGGGAGAGGATGGATGACCATGAGGCTACAATGATTGATGCTGGCCCA
AACAGAAAGAGATCATCAGAGACGGAGAACACAATAGCAGTTATATCTTCAAAGACACCC
GCCCTGAATCATGCCCCCAGCACAGGCAATGTCTTGGCACTTACACCACCCGCAGTTCCT
CCGAGCCCCTCTTCAAAGCAAGAATCAAAGATGGTTCGTACAACAGTCCAAAAGGTTATG
ACAACAACTTCACCTCTTGAAAAGGGTGTAGAAGCTTCTTTGGCAGGCTCTCGTGTGGAG
CACCACAGAGGCCAATGAGTGTGCTTTGCTGGAACTTTCGCGGTGCAGTCAAGTCGGCCA
CAGTTTGAGAGCTTCGGGACCTAACAAAGCAATTTGCCCCTTCCGTGTTATGCATTCTAA
ACTCAAATCTCATGAACACGGGTAGAAGGATTAGCAAGCACATTAGGTTTTGATAATGGT
TATGCAGTTAAGAACAATGGCCGTAGCGGAGGCCTAGGAATATTTTGGAATAATGAAATA
AAGACTGATATTATGGGTTATTTGGACTACCATGTTGATTCAAAAAATCATATGACGGAC
AACTTGGAGTGGCGACTAACATGTGTGTATGGGGAGGCAAAGGTGATACGTTTCCAACGT
ATCTATTCTTTTCATTGTTCCATGCTGATATATTATCATTATAGAATACTTTTGGGGGTA
TTTATTTACCAATTTNNNNNNNTTTTGAGTACTAACCTATTGACCTAGTGCCAGTGCGAG
TTGTTGTTTTCTGCATGTTTTTCACTTTTCAGGTTTTTCATACCAAAATGGAGTCCAATT
GAGATGAAACTTTTTGGACATTTTTTCTCGACCCAGAGGTAGTCCCGAAATACTTTTTAC
ACTACCGCAAGTCTCTGTTCCGACAGGAGNNNNNNNNNNNNNNNNNNNNNGCACCCTGCC
GGAGGGGGGGTCGATCACGGAGGGCCTGTTCATCAACCTTGTTGCCCTCATGATGATGTG
TGGGTAGTTCACCGTAGACATATGGTTCCATATCTAGTACCTAGATGGCAATCTCTCTCT
TGACTTCAGTACAATGATCATCGCATCTTNNNNNNNNNNNNNNNGATGTAATTCCTTTTG
TGCAGTGCATTTTTTGGGATCCGATGAATNNTGGGTTTATGTTCAGATTATTCACTATAA
ATATTTGAGTCTTATTCTAATACTAATATGATTCTTATGTGCATGATTATGATAGCTCTG
TAATTCTCTCTGGTCTATTGAAATAGTTNNNNNNNNTAGATTGATATTTCTTCGGTGAGA
CAGGTGCGCTGTAGTAGGTTTAACGTGGCGAATTTTTATATCCCAGTGATAGAAAGGGAC
ATGATGTGTCTTTGTGTTGTTGCTACTAAGTATAAAACAATGGGGTTTATTCATATTTAT
TGATTTTACTTTGTCTACATCATNNNNNNNNNNNNNNNNNNNNACTCTGTTTTACTTAAT
ACTCTAGACACATGCTCGATAACGGTCGATGAGTCGAGTAATAGTAATAGGTGTTGGCAG
GAGTCGGCTTATTTGTTTATAGACGTGATGCATATATACACATGATCATTACCGTGAACA
TCGCATAACTATCCTCTTTTCTATCAATTGCACAA