morexGenes - Barley RNA-seq Database

Contig contig_48254
Source Contig contig_48254
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_48254 (10073 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_48254

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_63995	2	1515 bp	MLOC_63995.1	Available	Available	LOC_Os01g50450.1, FRAME:+3, EVALUE:5e-15, 13101.m05248 protein expressed protein
MLOC_63996	3	1312 bp	MLOC_63996.1	Available	Available	LOC_Os01g50460.1, FRAME:+2, EVALUE:3e-108, 13101.m05249 protein nodulin MtN3 family protein, putative, expressed
CDS Structure of MLOC_63995

CDS Structure of MLOC_63996

Contig Sequence (10073 bp)

>contig_48254 10073 assembly3_WGSMorex_rbca.fasta
ATCAAGCGCTACTGCTAAGGCCATGACTAGTAGCAGCAGCGCGTGCCATATTCCAGCGCT
ACTACTAGGCTCCTACCTATAAGATTTTCCCTACTAGTGTAGTGAGACTGTCGTCGAAAG
TCATACTCCGGTTGTGGATGGAGTCGTTGATGGCGGCGCCTTCAGGCGTCGTTCCCTTGT
TGGTGGCGTCAATGTGGCCGCTCCCACTTTGTCTTTCCCTGACGTGCTCCGAGAAAACCC
ATGATCTAGTTTAGATCGGACGATGACGACGCTATTTAGAGTCACGTTATCTTTTGGGGC
ATCGTCAAGGAGATGGATCCGGTTAGAGGGACCCGTGGCTCACGAGGATGTGTGTGCTGT
TTGGTGAAAGGCGTTGTGTGTATGGTTTTTGGATCCGATTTCCCTTGAAAACTGAACCAA
CCTTTTTCTATCTATTCAACGAATTTCGCAGTTAAACTGCTAACATTCAAAAAGCTTTAA
TAAAAGTAGATCAAAATTGAAAAACAGATGAATTACATGAAAATTATAATAACATATTTG
AAGAAAACACACCACACAACAAAACAAAGTAGTAGGAACTTAAGAACATATTTGCTTTCT
CTCGTTGTCGAGTGTTAAAAAGAACAAACTTGCATTCTCTTGTTATGTTTCAATTATATG
TATCCGTGCTTCTCGAAACGTGCAAGAGTGTGTATTGGTTGTACACGTCCTAATCGTTGT
ATTGTGATGAGGGCGTGTGCTTCTGGGTAGAATGCTTTCTTGCTCTATGATAGAGTGCCC
TCTCGATAAAAAACACAACTAATTGTCAAAAAAAAAAAGGAAAGCTAATCGTCAATTGCG
TCGTGACTCATGAGAAAGCACAGTTAATCGTGCCATTGAAATGCATAGGAGTATTTGTTT
CAGATTACATGTCACTGTTGGTTCCCATATGTTTTTAGAAGAATAGCCACGGAATCATTT
ATGTCATTCTCATGCTGGTTTAATGTAGGCCCGGTCTCATCCATGGTATGATGATACGTG
CAACATGGAGCCATACAGACGGTCGAGGAGGAACTACACGCTAACCAGCGCTCCCCAGTC
CTTTTCCAGGGGCATCTTCGCCCTTTTTTTCTTCTTCTTTCTTCCATATAAACAATTACG
CGCTCCAAGCGAGTGAGTGCATGTTAGCCTGAGGTGCTTGTGTTCCGCACTGACATCCAC
ATGCGTCGCGTCGGGACAGCGTGGGAACGGATTTGTGCGGCACCTGAATACTTAAATCAT
ACAGTACGTCCCTCTGGATATTGAATTGGTACAAAACGGAATCAGGTTTGAAACAATTCA
AACAGGAATCTCGCACTCAGATCGCGATAACATGCTGGTTAACTAGTGCCAGATTCGAAT
AACCAGGCCTTTTTCTTATCCTCAAGTTGGCCAGTTTTGTCTCTCTCTAAGGAAGACGGG
CAGATTTAAATCTCAAGGACCAGAGACACCAATAACCATACGGCTGCATTTTCACGGACA
GAAATAAATAAAGAAAAAGCTTGAAGGAACGGGCGTGGAAACCAATGCGTCCAATTGATG
ATCTTCGATTAGACGGCCGACCCTTCCAATCCAAGACGACGCCCTCGTCCCACTGTGGGC
CGATAGGCGAGTCTCTGGATCCAGTTCGTCCATCAGTCAAGGTGGCACATCAGTCCGGCG
CCCCTAGCGCTCAAACGGCGTGGGCCACGTCGAAACCAACAGCGGCAAAGGGGGAGCCGC
TGGCACGAGTTCGGTTTGGTGTCCAGGAGCGCACCGGATCGTGTGGCTCTCTTTGAAACA
AGCCTGCATCTGTCACCGGGAAAAGGTGTCGACGCGATTTTCTGCGCACGAGGACCGTGT
GGCCCTTGTGTCATCAACTTATTACTAAGGTGTCGAAAAAGAGAGAGGGTGTGGCAAATT
GGCTGTACCAGCCTGGAGTTGAATTGTCATCTTCTAAAACGTATTGCGGTGCAGCCCATG
GCCATTGGAGCGAGCAGCCGTTTTTAGATCAGGGGATTCGCATGCAGCCAAGCTGGGCAC
GTTGTGGTTAATGGACGAGTTAAAAAAGGTCCGAGACACCGTTAAAAAAAAGGTGTTGGA
GGCGGGGCGGCCTCCTCTTGATACGAAACGCACCGAAACGCTCCCGTGGGCAAATTGCTC
GGGAATCCTCGGGCTTTTTTTGCGGAACAACTTTAGTTGTGTAACTTTTGTGTTTCAGTT
TAATTTGGACATTTCATATGTGTTGATGAAATTTACAGTCCTTTCATGATTGGAATTGTC
ATCGAAAGACGTCATAAGTTGACTTATCACTTCAGTTTCTTTTTAACATGACAATATTAA
CCTGCCGAGGATAGTTTAATAGTGAACTAAACATATTTTCGGGATAAATAACAATATGTA
CAACTTGAGAAACAAACGATACGTTTTCGGCACAGATAAATAAGATAACGCCGTTCAAAT
TCGACCCATCTGTGTAATGTAAACCTAGCAAAAACTGATCCCCTCCCTCCCTCCCTCCAC
AACAAAACAAATCTGCTCCCCCCTTCCCCTTCCTCCCCTCCTCTCTCCTCCCCTCCTTCC
ATCGCCGGCGCCGCACCCTCCAATTCCGCCATGCCGAAGGGCGCCAAAAAGCGCGCGAAG
CTCAAGAAGAAGCAGCAGGGGGGCCAGCCCGCCGGGTCCAACGGCGGCGCCACCACCACC
AACAACAACGACGGAAGCAATAACTCGAGCCACGGCGACGCCGCCAGCGATGGAAACCAC
CTACCAATCAAACTTACCATTCCTCCCGGTACGCACGCATGGCTTGGCACCCACCCCTCC
CCTCCTCCCCCTCTCTTTAAGCCGCGGGCAGATCTGCGCCACGCCGCTTTCGGCTCCAGC
GGGGAGGGCAGGAATCGCCTTTTGCGCTTGCAGCGAGGGTGGCATTCGCGCGCCCTCCGC
TGGCGCCGCCCGCACCTCCCCCACCGCCCGCTTTATGAGCTGTTCGCCTTTTTCGCCTCG
CCTCGCCTCGCCTCGCCTCCTTTCGTGCCCTACAAGATGATGGATGCGTGTGTGTGTTTT
TGATGCCGTGTGCTTGTGTTCGGTGGTGGGCGCAGTGGACGCAAGCGAGGATTCCATGGA
GAGCTCCGAGGAGATGGTGACGCCGAGGGCGGAGGTGGCCGACGAGGAGAGCAAGGGCGC
CGCGTCGGAGGTGCCGGTTGAGCGCGCCGTCGAGGTCGCCGATGAGGGCGCCACGGGCGA
GGCCGGGGAGGAGGTCATGGTTGACGCTTTGCCGCCTGAAGCTGCTGATCCGGAGCAAGA
GGGTAAGGTGGACGTGACGGCGGAGGCGCATGCCGTGGTGCAGGAACCGGAGGTGCAGGA
CGTCGTGGTGTCCGAAGCACCCGAGGTGCTGGAACCAGAGGTGAGGAGCGAGGAGGTCGT
GGTCCGGGACACGGCCAAGGTGCATCCTGCGCATCAACCGGAGACGGAGACGAAGGCCGA
GGGGGTGGTGGTCAGGGATACGGACACGGCTGCTGTGGTGCAGGAACCGGAGGCAAAGGA
TGAGGTGTCACGGTCTCGTGAGCCAGCTCCTGCGCAGACTACAGAGGTACAATAACGTTT
CTGCTTGTTTGCCATCCATCCCCTGTATTTTGAAGCTGTGATATCTCATTGGGTGGGTTA
TTACTTTTGCTGCAGGTTGTACGGGGACCGGCAGTGGCGGTTGCTGCTGCGGGGCATCGG
GCAAAATGGTGGAATTGCTGTGGGATTTTGGATGTCTTTGCTGGTTCAGAGAGATAGATG
CAGGTGAGTTGGTTTTGTGCGTGGTTATGACTGTGTTTGATAATTCCTCGTTCATTGAGA
GTGCCATTCAGTCAATTGTTTGTATGAATTCTGTGCAAATTGTGTGATTGTGAGTGAACA
AAACCTTGTGTGCTGCACCTTTGAACATGAGATGCAGATTTGTATTCCCTATGCATAACT
TAACATCTGGAATCTGTACTAAAACAATTGGATGCAACTGGGGAACTTGAATCATTTGTT
CGGTAAATGGCAGGAGCACAGCCCATTCAGTAAATACTAACTTCAATTCCGCATCTCATG
TTCAAAGGGACATATTAAAGTCTTTGTCTTTCTATCGTGTTCTGCTCACAATCCACGACC
CTTCTTTATAAATTGGTATGCTCCTGGTATTGGCACTTATCATATTCAATACAAACATGT
CTTGAATTGTTTTTGTAGGATCAAATGTAGCAGCACTTGTGATTTTACCTTTCCGTCTTA
AAGTATTCGCAACTGCTGACACCATATTTCTACAGCTGGAAACATATTTTACTGAGTTAA
GAGAAAATGATGCCAGAAGAAAACTTTGAACAAGTTCTCTAAGATAATTTTTACATGTGG
CTTTTAATCTTTCAATTTTTTTATGACTGCTAGGTTTATTAGTAGAGTAGCTCTCGTACC
ATGTAAATATTTCTTCAATCTTAATGCTCCCCTTATTTTCACCAAGAGTTATCTGTACAA
TAGAAGCACCATTCTGGGCATATAAATCTTTCCAATATGTATGGAGGCATCTTATCATGC
TAGAATTCATAATCTCATACATGTAATGAGCTTTGTACAAAGATGAAAGAACTGATTTCT
TATATCAAAAGCTTAGGATGGAGTTACCTGGAAGATGTCAATGAGCCATGCATGCGTTGT
GTGATATGGTACCTGAATAAATTTGATTGTGCTGCATTTATGAGAGGCCGGAGTAGTACT
GTTCCTTATATCCTAATAGTCATTTATTTGGCAGAGAATATGTTAGAAGTTTGGTAAGCC
TAACATGTGCTATAGTTGTTTCAAGAGCTTATGCTATACGGTGTAGTATTTGGACACTGT
TAGGTATGAAACATTTATGAGGACACACTATTCATTCAACTTCATTGCAAATTGCAGTAT
CCATCTACACAAAATTGCACCCTACATTTTTTATATTAATGGGGAACAGTCATGTTATTT
ATATTAAAAGTATTTCCCAAATTTCATGTGTTTTTATGTTTGTTTTCCTGCTAGCTCATA
TGAGGACTAGGAGACACCTTCTTTGTGCTATTTTGAAGAACCTGCTCCCTGCTACACGAG
GAAAATTAGGAGACATCTTTTCTAGCGATATTTTCTGTGCTCTTACTCATTTTAAAAACA
GATAACTCGGTAGCTGTTAAGTACTAACATATCACTCAGTTAACTAGGATAGTCGGCTGA
TTTCATTTGAGGAATGCATCTGCAATCTATCCACGATGCACTCTTTATTTTTACTACTCC
ATCCGTCCCAAATACTCCATCCGTCCCAAAATTCTTGTCTTAGGTTTGTCTAGAAATGGA
TATATCAAAATACTAAAACGTGCACAAATCTAAGACAAGAATTTTGGGACGGAGGGAGTA
TTATTTTATCTGTACGAAAATGTGGATAATAAACTTATGAATCTGTCAAGACTTAGATAA
CATCACCTTCGTAAAAGATTATAGTGACCCTTTGATGTAGATAATGAATCTTGGCTGATG
ATGCACTGTCTCGTGCTTGTCCTTTCATTCATACTAATTTATATCTCCTTACCAGTTTCA
TGAAAGGCCCTTGTTATGCTCAGGTACATGAATTGGAAGGAACTTGGGAAGCAAGAAGGC
AGAAGATGCAAAGTTGTGCAAAGCTGATGGGTACTTGTAACTAGGCTCGTTGAGTGCTCA
CGCAGAAGATGGAGTTGGAAGGATTTCGAATTGACATCGAGCTGATGCTTCTCTCCACCC
GTGTTTACCGTATCTTGCTGTGCAAAGTTACATTGTATTGGTTGTGGTTAAAATCCTGGG
TGTAGTATTCTGAATATTACCCCCCCTTGTCTAGTGGAGTATGTTCTAGGTTCTGCTGTC
CTTGTAGCATATGAGTTAAAAAGTGGGTCAACAGTGAAAATTTTGGTCTTTACTTTCTAT
ACTTATTTGTCGGGAGGTATCATCTGTTACGTCCCTTTTAATGGCTCTGTTACAATTTGA
GATGTTCTTTATCGTCGTCTTAAATACTCCCTCTGGTCCTTTTTTTCTGCATATAAGTTT
TGTCCAAAGTCAAAGTATCTCTACTTTGACCAAACTTATAGAAAAAATTATGAACATTCA
TCATGCCAAATTAATATTGTTAGATTCTTTACGAAATGTAGTTTCATAATGTATATATTT
GGTATTGTAGATATTGATATTTTTTAATATAAATTTGGTCAAAGTTTGACTTGACCGAAA
TCTAATATGCGGAGTAAAAAGGACCGGAGGGAGTACTAGCTCCACAGCATATTAGAATGT
TCAATACAGGAATGAAAATGAAGATCCTGTTGTGTGTGGGGTAAGCTCTTTTATATGTGT
TGAGGGCACATGCTGGAACCTCATTAGTTACTCTTGAATTTGCTGTCTCGCAGCGTGCAT
GTATCTGCCTTGTAGACTTACCTTGCTTGCCTTCTCCTTGTGTTCCAATAGTTGAACCAC
ATTGCTTGCTTTTCGTGGTCTTTACTCGCAATTTTAAGGAAAAGACTGACCACCGTGTTG
ATTTTGTTGATTTGAGCTGGCCTCTTTATCCTTGCAAATCCCAGGTCAACTTTCTATTAC
ATCTTTGAATTGAAAATCAGTTGGAAGACTAAAAAGGAAGAAAAACATGAAGTGTGTAAA
TGTTTACTCCGATCATGTCCGAAAGATGGTGTAGCCGCTCATATTTGGTGGGACCAAGTC
ATGGCAAGTTTTGAGCACAGAATTGCATTTCTCCGTGCTGAATTTAGCCAGTCCATTTCT
AAGCAGTGAAATGGTGTTGCGTGTCAGCCTCACACGCGCCTTTTGTCATCCGCTTCTCGG
AGGTGCAGGTGCTGGTGGCCGTCCAATCATCTGGTTGCCACGGCCGGAGACCATCGCGTC
AAACAAATAGAACGAGCAAGCGGTGGCCATCCAACCTTTTGGGCCACATGTTTAAGCAGT
GACTCGGCCGATTTTTGTTCATGAGGAGGATCCGCTATCCAGCCCAGAATGAACCACCTG
GGACGCCAGGAAAGATGCTTCAGATCCTAGCTGGCAGTGCACATACTGCATACTAGCAGG
CAGTAAATTTATTTTTCGTAAAGCTGGTAATGATGAATGATCTTGTCAGTAATGAGCTAC
CTGACAATAAACATATTGATGGCACCGCGGACCACGTCCATGCGATCCACGACAACGAAA
TGAAGGCCCCGGTATCAGCAGAGGCGAGACGAGTTCTTGGTTAACTGGCGAGCGAGTGGA
GGCCATCGCTCGCAGTCTCCCGTTCCACGGAGAAGAGGCGCTAGGTTGCCGACGATTCAA
CCATACAATCAAACTTGTGGCTCTGGGGTTGCGCGTCGCCGACTGGCTCGTGCCGTGCCG
CCCGCTACAAAAGCCACGGGGTTCCGGTGTAAAGAGCAAGGAGGGCAGACGTGGAAAGAG
CGAGCCAAGATACAGTACAAGGAGGCTTCTTCAACCTTTCATCCATGGTCATGGACTCCC
TCTCCCTCTACGAGATCTCCTGCTTCGCCGCTGGCTTTGCCGGCAACCTCTTCGCCTTCG
CTCTCTTCCTGTCCCCAGTGTAAGCATACATAGTTACATATACGCGTGCTGTGTTGTGTT
CTCTTGATCGTCGTGGAGAGAGGTTTCTGACGACGGACTGTGTTTCAGGCCGACCTTCAA
GAGGATCCTCAAGGCCAAGTCCACGGAGCAGTTCGACGGGCTCCCTTACCTGCTCTCCCT
GCTCAACTGCTTCATCTGCCTCTGGTATGGCCTCCCCTGGGTCTCCGACGGCCGGCTGCT
CGTCGCCACCGTCAACGGCACCGGAGCCGCGTTCCAGCTCGCCTACATTTGTCTCTTCTT
CATCTACGCCGACAGCAGAAAGACCAGGGTAATTTCCTCCCCGTCCTGGCTGAACCCGTT
CCACTTTCATCTGAGAAGCAGTCAAACGTTAGTACTTCTTCCTGTTCCTGTACTGAAATC
TTTTATCCATTTCCTCCACAGCTGAGGATGGTAGGGCTCCTGGTTCTCCTAGTCTGCGCG
TTCGCCCTCGTCGCGCACGCGAGCCTCACCTTCTTCGACCAGCCGACCCGGCAGCAGTTC
GTCGGCGCCGTCAGCATGGCGTCGCTCATCTCCATGTTTGCTTCCCCGCTAGCCGTCATG
GTACGCCTCCCAATCATCAAGCTGGGCTCCTGATAAAAAATTCTCCTACCTAGATCATCC
CCTTTTTACGTACGCAATCGGCGCGCAACAGAGTGGTATGGAACTGTTCTGACGCGTGTC
TCCATGGTTGGTTCTTCAGGGCGTGGTGATCCGGACGGAGTGCGTGGAGTTCATGCCCTT
CTACCTCTCGCTCTCCACGCTGCTGATGAGCGCCTCCTTCGCGATATACGGAGTGCTGCT
GCGCGATCTCTTCATCTATGTAAGCACCCGATCTGATTTCAAATTGCATTTGCTTGAATC
GCTGTAGTTTATCTGTCGGAATGCGTGTGCTGACAATTGGACTTCTCGCCGTCTGAATTT
TCAGCTGCCCAACGGGCTTGGAGTCGTCCTGGGAGCAACGCAGTTGGCGCTCTACGCTTA
CTACAGCAGGAAATGGAGGTGCAAGGATTCCTCTGCGCCGTTGCTTGCCTGATCAGAGCT
CAAGTGATCGATTCTCAGTTTTAGCTTGGCTAGGAAGTGTGGGTGTAGGGTTCTGTAGGA
GAGAACTGCATGCCCTGTTTTCCCTTGTTGGTGCTGAATCTGCCTGTACAGATTTGCTGG
CCTATGCCTCTGTTTATACAAACGTGTCATTCTTTTCCCAAAGAATGCAAAGGGGAAATG
TTTTTCTGATTCCGCCTTTGTTATGACTTATGAAATGTTTCTCCACACAAATATTTCAAT
TCAGGGCATTTTTACTTCACAAGTATCGAAAAAGTTCGTCTCGAATGTTTGTATATTTTA
TACCACCGCATCATATTTTATGTCATGTATTTCATCTGTAAACTAATATAAGAGTATTTA
GATTACTAAAGTAATGTTCCGAATGCTCTTATACTCCCTCCGTTTCTAAAAAAATAGAGT
TTTCACTAGAAAACTACATACGGATGTATATAGACATACATTAAGTGTAGATTCATTCAT
CTTGCTCCCTATATAGTTCTATAGTGGAATCTCTAAAATGACATATACTCCCTCCGTCTC
AAAATTATTATCTTGGTTTTGTTTAGATGTGGATGCATCTGGTCACGTTTTAGTATCTAG
ATGCAGCCATATCTAAAAAAAATCTAAAACAAGAATTTTGAAACGGAGAGAGTATTTACA
AACGGACAAGTATTAGTTTACGGAGGGAGTATAAGAGTGTAGTGATCTAAACGTTTTTTA
CATTAGTTTACGGAGTGAGTATATTTTATTTCTATTTCTAATTGGAGAGTCCGTACATTA
TTTGAAAATCAAGCCATTAATAGAATTAATTAGGATCCCTCGACCATATTCTTATAAACC
GGTGTCTCCCCAGAAATGATGTCGTATAAGATTTGTTTCTGAACTTCTTTATGGTAATGG
ATCCTGGAACATAGAACTGCTAAGAACATCTTCAACAACCGCGTTACCCGCGACGCGGTA
AAATGCAGTTTACAGCATGCGGTTTGTCTGTTTTAGCGCGGCGGCCAGCGCTGGCTCCAA
CAGGCGTGCTAAAATGCAGCGCCTGCACATAGCTCCAGTAGGCGTGCTAAAATGCAGCGC
ACACGAGCAGCCGACGCTTGTCATGTGTTGCATTTTTGACCCATTTTGAGACAAAATCAA
TTTTGAACATCAAAACAAAGACATGACATAATTTAAATCACACANNNAAGTTCATGATGA
CATAAAAAGTTCATGCCCACAAAATCATTCAACCAAGTTCATACCCACTAGTTCAAATAC
ATGCCCACATCAATCCTCGTCCTCGTCTTCATCTTCATCTTCATCTTCATCTTCCTCCGA
TTCATCATCCGAAGTGGATTCTTCGTCCTCCTCTTCACGGGTGTTGGCAAGATCATGCGA
AGGTGCTCCGACGCAAAACTCATACCTCCCATGCCGCCAATGCCGCCCGGAGG