Contig Data
morexGenes
Links



Map Locations of contig_48246 (4335 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_48246

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63989 2 1930 bp MLOC_63989.1 Available Available LOC_Os03g57190.1, FRAME:-3, EVALUE:4e-99, 13103.m06269 protein TCP family transcription factor, putative, expressed





CDS Structure of MLOC_63989






Contig Sequence (4335 bp)

>contig_48246 4335 assembly3_WGSMorex_rbca.fasta
GGAGGGGACAAGGCTGAGCCCTACCTACCCCTTCCTCCTATAAATTGAGAGGGAGAGGGA
GGCAGCCAACACACAATTGCTTGGCGGCGCCATACCTCTCTCTATCTATCTATCTATCTA
TCTATTTATCTATCTATCTATCTCGTAGTAATTATCCTCCGTCGTGATCGCGACAGCGCT
TGGCAAAGCCCTGCTGAGATTGTACTGCCACCACCGCCACCACGTCGTCGTGCTGCCAGA
GTACTCAACCTCTACTTCACCATCGCTCGCTGGATTGAGGAGGTGACGACGTCATCGAGT
TGTATGTGTGCTGAACGCGGAGGGGCCTTCCATTCGGCACTTGATCGGGACGTTCGTGAT
CGGATCGGCGACGGATCGTGATTTGATGACGAAGACGTTTGACAACATCAACCGCGTTTC
TCAACGCTTCCGCTTAGCGATCTGCAAGTGTATGTAGATGCACACCCCCTCTCGTAGATG
TTAGTCTTCATAGATTGGTCTTGGTGAGCGTATGAAATTTTTTGTTCCCCATGCGACGTT
CCCCTACACTGACCTGGTGGAAGGTACTCTCTGCTAGCAAAAGTTAGTTCTACGAAAAAC
AGTGATTCTGCTTTCCTCCGCAATTTGGCCCATAGTAAGAAAAGGTAAGGTTACGTAAGA
TATGGGTATAGGAAGACCCCCGATGATATAATTGTCAAGGTGTGTGACGGGATGTTGCAG
GGACAAGTTCCAGCCTGCGTGCTCGATACGATCTTGCGCGATTGTAACAACAACAACAAT
ATCTCAAGTTCTCCGAGCCCATGGGAGTCAACTAGGAGGCAGAAGAGAGAACGACACTAC
TATGGAATGCAAAATAGAGAAGTCTTTGGGGCAAGAGGATTTGTAGCTCTCGGGTGTATA
AATATATCATTTAAAAACATATTAGGAAATTTTAAAAAAATCCAATAGTTTGGGATATGA
AACCTAGGTGCCCGTTTTACACCTGTGTCTAGTTTCGTGGGGAATGGATATCTTTGGTAG
TGTGAGTAAAAGGACAAGAAAATCGTATGTGTAGAAACAAATGGATGTAGGACCGTAATT
CTTGCGCTGCGGATACCACATGCACTCATTCCCCATGAAAATGAATACATGTGTACAATG
GGCACCCAGATTTCATAACCCAAAATTTCAGAATTTTTAAAATTTTCAGATTTTTTTAAT
ACTATTTTTATACCCCAATCTATTTCCCAGTCTTTGGGGGACTTGTTTCTCCAAACCTGA
GAATAGTCTGGCCTAGAAGGCGGGCGGCGCTTGGCACAGTTTCTAAATGATCTCAAACAA
AACAAAAAAGGCACAGTTTCTAAAACAACAACAGATTCTAGCCCACATAGCAGGGCTAGC
GCTTGCCAGTCTTTGTCTAATAAAACTCCCACAAAACTTGTACACCGGCCTCATCACAGA
GGAGAAGAAAAAAAAGCAGCACATGGTTGCCTGAATAAATGGCAGCAGGGTTCATGCCGG
ACGAAGCAGACTTGGACGAATGATTGATGATGATCCGGCCCATACACTCCTGAGGCAGCA
GCTCCACGAAATGAATTATTGCCGAAGCCGAAAAAAATCTTGATACCTTGGGTTCCTGCA
GGTTGACAGAAATGGAGATCATCGGGATGCTATAGCTTGTACCAGAATGGTAAGATAGCT
TTTGATTCAAGAGGCAACACATGTATAAAGATGATGCAGACGACAGTAAAGCAATTCCTG
CCAACAATGGTGGAGCAGAAAATGTGGTGGCTTTAGGGTGGCAGCCTTATGTGCCGAGAT
CATCAGAAGGTTAAAGAGATGTTGGAGACCGACACACTGACATATGGATGTCTCATACTA
CTAGTTCACACCTCTGTCAATGCAGTGCACAATGACAGTATAATTTGCATGCCCAAGCTT
TAAACGATGCACAATGAACAGAAACATTCACCTAGGCTAGTACTGCTTTTGTACCTATTG
ATGCACATCCTAGTGTTAACTGGTCAGAAAACTAAAAGCAGGAACATGATTAAGAGTGCC
TAATCAAGGTAGAAAAGGGAAAATGGCAGACTTATGTGGTGAAAGCACATCTGAAATTCA
GTTTGTTTACATAGTATGTTCATCTAGATGTGTCCTAGACAGACTTTTTTTAAATCAAAA
AAGTTTGTTTGCAGGTGTAGACTTAGTCACTTAGATCCCCAACCAACCAGGAACCACTTT
GCCGACATCTGAAGCAAGCTAAGTTAAACCAATTGTCCAGGTAACTGCAGCGAAGTGCAT
TGGAAAAACATGACATATGTAGGACTTGTCATGTCCAATAACAGTTTTGCTAAAGGGCAT
CTGTATTTCCATGACTTGATTAAACCTCACTGTTGTAACAAATAAATATGAACAGTAACT
GCATTAAGATGAAGTTGACAAATGTTGTTATAGAGGTTGTGCCCAGAATTAGCTATATGG
GCTAGAGAATGAATTACTGTGATATTCATAGTATTACACATAACCAGGGAAAATGGCAAT
CACAACCCACGTGATTGGCCGGTCTCCTGCGATGCAAAATTCCCTCCCAAAGGGAAGCAG
TCGACACCTGTTTGGCTCAAACCATGCAAATTAAGCGAAATGCAGACACCTGCGGCTAAG
ATTTCGACACCCGTCCTTCGTAACGAAGCGTGATTTGTGCTTTGTGGGACTTTGAAGGAC
ACCTCGAGCAGTGCCAAAAAGTTTGCAACGATGGCAATATAACGAATCTAATCTTAAATC
AATGGTGATAATGGGGAGAAAGATCGACAGTCTTACCGCTGGTGGATCGGGGTGATCAGT
TCTTGCTCTTCTCCTTCATGGTGGCGTGCCGGAACCCGTTCCACAGCTGCATCGCCGCGG
TCCCCCCGAGATGGTTCTCCGACGCGAGGTGCGGGGCGGTGGCGGCGGCCTGCTCGTACA
GGAAGGGAGGGCTCGGACCGTCGTCCAGGTCCTGGAGCTGCTGCTGTTGCTGGTGGTGGT
GGTGGCTGGAGAAGTGCGGCGAATTGGACTGAAGGGGCCCCCTGTTGGCACCCATGTAAC
CGGAGTTGATCGAGAAGTCGAGGCTGTAGTCTCCGGCTTGAGCCGGAGCCGGAGCCGCCG
ACAGCCCGTCCTGGACGAGCGAGGAGAAGTGCGTCATCTGGGCGGAGGTGCCGAAGTTAA
ACGGCTGCGCTGGCACCATGCCGAGCGGGGGCGCATTACCGAATCTGAAACCGGGGTACG
TCGGCACCACCTGCGCGCCGCCGCCTTTGCCGGGGTGTGCGATGCCGATGCAGTCCGCGG
TGACCGCGACCGCGGAAACGGCCAGCTGCCGCTGTTGCTGCCAGGACTGCCTGTGCTGAG
CCGCGCCGGCTGACCCCGCCCCGGTGAGCAGCTCGGTGAAGGACCCGGCCTGCGTGGAGG
GGTTGCTGGCGACGGTGACCTCCTTGTCCCGGGAGGAGCCGCCGCCGACGCGGCAGTCGG
AGCGCGAGAGCGAGAGCTCGGACCCCTTGCTGGTCTCCGACGTGCTGCTGCACAGCGACC
TGCTGCCCTGCTGCTGCTTGCCGGCGCGGGGCGCGGCCTGGTGGTCGGCCGGCATGGCGG
CGAAGGCGGCCGGGTCGAGGGAGGGGAGCTCGTCGATGGCGGGGGAGGCGGCGTTGATGA
GCCACTCGATGGCCTTGCTGGGCTGGTCGAAGCCGAGGCGGTCCTGCAGATCGTAGAACT
GGATGGCCGTGGGCACCGAGAGCCGCACCCGGCGGTCGCGGATGCCCTTGGACGTGTACA
CCTTGCTGTGCCGGTCCTTGCCCCCCGACGCCTTCACGCGGCAGATCCGCGACGCCGACC
CATGGAGCAGGTGCGGCTGCTGCTGCTGCTGTCCAGCCGGCGGCGGCGACCCCCCCGGCA
CCAACTCCATGCCGTCGCCGCCGCCATCGCCGCCGCTCCCCATCAAGCCGCGCATGCGCT
TGGCCGAGGGGCCGCGGCCCGGCCCAGCCGCCCCTCCCGCTGCGTCGGCCGACTCCATCC
CGCCCCGTACATACGCTGCGGCGAGGCCCCCTTTTATTGCGCTCGGGGACGGGGAGCAGC
CGTTTCGGCTGCGCTGTGCGCGTGTCAGGGCTGGAGCTGGCTAGAGTGGCAACGCCAACG
GCTCGCGGCTCGGCCTTTTCCGGCAAGCGGATTTGCCCCGCCCAGCCGCCGCGCCTTTTA
CGATACTGCCCCTGCGACTGCGAGCTACCGCAGCTGCACCCGCTGCCTAATCGTTCGTGC
TCGCCTCGCACGCGCTGGCCTCTCTCTCCTCACGCGGCGGCAGCCGGGGAAACAGCGGGC
GCGGGAGGGTCTAGG