Contig Data
morexGenes
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Map Locations of contig_48237 (6703 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_48237

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63979 1 473 bp MLOC_63979.1 Available Available None
MLOC_63980 2 1208 bp None Available Available None
MLOC_63978 1 1619 bp None Available Available None





CDS Structure of MLOC_63979






CDS Structure of MLOC_63980






CDS Structure of MLOC_63978






Contig Sequence (6703 bp)

>contig_48237 6703 assembly3_WGSMorex_rbca.fasta
GATGCAGTCCTATCTTAATCGGGAAGTCATCAGTGTCGCCATCACTNNNNNNNACACTTG
TCACAACATTATCGTACATATCCTTGATGAGGGTAATGTACTTCACCCGGGCTTGGGATC
GACTATCTTGAGACAACATAGGCGGAGTTACGATCTTAGACCGGAAAACCAAAAAGAAAA
CGCTGATCAAAGTGACCGGCGAGAGAGAGAAAACCTGGATCAAAATATCGGGAAAACGAC
TCTAGGGCTGCTGGTCAACACGACTGGTGGATGAACCCTAGGTACGGGCGGCGCGGCCCC
CAAGGGCGGTCATGAAGGCCGACCACCCCGGAGGCGGCGGTTAGGCAGGCTGGTCCTGAG
ATTTTGGGGGGCCCGGGGCGGAACTTTAACCCGGGGCCCTGTAATATAAATACCAATAAT
AATAATCAATGTGTGTATATATAAAATGTTACCAAGAAACACTTAAGATGTTCCGAAACG
GTTCCATATAAGATAACTTAATAAAAAAAAATTGACATTTTTTTGAATGCATACTTGGAT
GACATAAATGTGATAAATTTAAAAAGAAATTGATTAATCCAAAACTAGTGTGGAGTTACA
AAGCTACTAGACAAACTCAATTAAATCTTACTGATTATCAAGTTCAACTCATATAAAGGG
CAAATCTCTGATATGTACGTATCCCTAAAAATATCCAAAATATCCAATCAATCCATCATC
AATGACTCTATGCAAACATCTAAAATTCAAATGTACAAGATGTTACTGATAAAAATTTAA
ATCAATCCACAAAATATTTTCATCAAATGAAATAATGTATACATACAATGCTGAAAAAAA
TGGCATCAAAAGTTGAATGGTGCAATCTATGCATCATACAAAGGTCAATTACTTACTTAG
CCATGTACGTATAGGTACATCGGATGGGTCAGATCCTTGTTGGTGATCGCCTTTTTTTTA
TGAGAGACTTGTAGGTGATCACCTGATTGAGCGCTCAGCCATGACTCAATCTAGACTGGC
GTGTGCGTCAATGCGTGTCTGCTCGACGATGAGGCCATGAGGAGATATGAACAGGCACCT
GGAGTGGAGATCGGAGAGCGGCGCTTGTGAAGCGGCGACCGGCGATCAGATAGGATTAGG
GCATGGTGACGATCGTCGCGAAGAGATGAACCTGCGATCTGATCTGAGATGCAAATTAGG
AAACCGAAAAAGGGATCTGTGCGCACGAGGCTACAACTACGAGCTAGCGGGCGAGGAGTC
GTGGAACGATCTGGGGCTTGACAATTAAGCGAGCCGCTGCATGCTCAGCTCAGGGCCAAT
GCGTAGCTTCCACGGGCTGGCTGGAGCTGTGTGTATGGGCTGCCTACTTACCTAGGTGGG
GGCCCCTGAATTTTGGGGTCCCGGTGCGGCCAACCCCCTGCCCCCTCTCAGGGCCAGCCC
TGTGGCTAGGGTTGGATCGGTTAGGCTGATATAAACCTGGGCATACCCCTGGCCGGGCTT
GAGAAAGCCCGAACTGAAAACCCCAAGCCCGAGCCCAGCCCAAATGGACTAAAAAGATGG
ATTTTGGGCCCGGCCTGAATGGACTAAAAAGATGGATTTTGGGCTGGCCTCCGTGTAAAA
TGGCTGTCTTCTCAAGACTGAGCCCGGCCCAAAAAGACTACCGGGCCTAGTTTTGAAGCC
CGAGCCCAGCCTGAACATAAAGCCCGGCCAGGGTTTTTCGGGCCGGGTCACCGGGCTGCC
CATGCCCAGGTTTAGGCTGATATCAATGTTAGAAGGGATAGAGGGGGATTGGTAGAATAG
ATGTTTATTGTTTGATCCTCGTGGGCATATATATAGGAGTACACGATCAACTTGGGAGTA
CAAAACAAGCCAGAATAATTTCTAGCCATCCTATGTTTCCTAACTAATCACGATACTCAA
CAGAAACGAATGTACCAAGTCCAAAAGAAACATGCACCATGCAAGATCGGGAGAGATTCA
CATGTAGACAAAGAACTAAAGGTGGCGGTGGTCGACAGGAAACATGCAATGGACCAAGTC
CAAAAGAAACATGCAGCATGCAAGATCGGGAGAGATTCACATGTACCAGAGAAAAAGAAC
TAAAGGTGGCGGCGGTTGACAGGAAACATGCAAACGGCGGTTTTCGCTCCTGCCTTCTAA
GTCACCGATTTCTAGCCCAAACATTGACATCCAAACGAGGTGTAATTAGACATGACTGTT
TTTAAACAAGACTTGGGACTGCCATGCTGTTAATCCAGATGGCTTAATACTTCTTTCAGT
TAATTAAACCGTGTTATTAACTATCTGCCATGCTTGGGACTTGGGATTGCCATGTTGTTA
ATCCAGAATATTTTCCCTATCTCGTAAGTTCCCCAAAGTTCTTAATAACGACAAATATGT
TACAAATTTGGTACTCCCTCCATTTCAGAATACAAGGTGCATCAGTTTTCGTGCAAGTCA
AACTTGTGTATGTTTGACCAAGATTATAGAATAAAATATCAATATCTACAATATAAAATA
AATATATTTTCTATGATGGATCTAATGATACAATTTTGGTATTGAGATATTGATACTTTT
TTCTAAAAACTTGGTCAAACATTTACATGTTTGACTTTCAAAAAACTAATACACCATATA
TTTTTTACTGAGGGAGTACATCTTACAAGGGCTTATAAATTGGGCTATAGAGGCAATATT
GTGGTTTTTGTAATAAATACCTACCTTTCCTCATGTGGGCTGTAAATAATGCTGATACCT
GGCATTTTATCACCGGAATTTTTCTTATTTGGAAAATATTCCTTTTTATTGAATTTGCGA
AGTTTAAGCATGATGGTATAGCAATTTGGAAAATAATGCCCTCATGGAACCTACTTTTGG
CTTTCGAACCTTTTCTTATTTGCTATAGCAATTTCATATTTTCAGTGTCCCTGCAATTTA
TTTTTGTGATGACACTAGGTTCACTCTTTTCTATCTTCTTTTTTGTCTGTTACAGGTTAT
CTGGATATGGTTTCAGCTGATAATCCAAATGCAACATGTAAATTTCAAATTTCTAAGCTG
TCTTCTACTGAATAGAAAACGTGGTTGATGTGATGATGTGAGTTCAACACCACTTATCAT
GCAAGCGGTCAAGAATTTCGATCTTCCATATTATGTGGATAATACGTGGAAACTTAGGAT
TGTTGATACCCTTGTTTTTGTTCTACATGAGTGTTTACATCGTCAGCTTCATCTTGGCTC
ATTGATTCAGGTTTTTTGCCAACTAATATCAATGGCGCTGTTTTCTTAAAGAGAGCCTGG
GGACTCTTTGGTACAGCTTTAACTTTAATTATGGATCAGAGCCTGTGTGATAATGTTTGC
TCCTTTTGGCACCCCAGTGGGATCTCCTTCTGAACTTTACCTGGTTTGACTTTAAGTCCA
CTTGAGTTGCTATATAATGTGTCGAATTATAAGTTACTTGGATTGGATTTCTTATGAAAT
ATTTTTTGCGCCAGATGTTTTCAGTTTGCAAGCTGACATCTTATTAAATGTAGATGGGCT
TGTGAAGAGGGCCTGGAAAGTACATGATTTTTGTTAGCATGGGATGCTTGGATGATTATT
ATTTTGATTGCTTCGATCAATTTGCACTAAAGCAATCCATAGTGTAGTTTTGGACTCTAA
ATTATATTTAAAAGGTCTTATATTTTGGAACGGAGGGAGTAATTGACATGCGATGGTGTA
GTTTTTGTGTATTATCAATGTTCCATTGTGTTACTTTTGATCATATTGGTAAAAAGGAGA
GCGTGTTATTTGTAGATTTTAGTGTGTAGCTTGACTTCTCTGGGATAAGAAGGAACTAGA
AGTGTTTCGCGCTTTGCTGCGCTGACTCTTCACTGACGCCTCTATGGTGAGGTTTTCATG
GCATCATACAAATGAAGTCTGGCTTGACATGAAGCCGCAATCTCAGAGCTAGAGAACTAT
GAAATGATTCTTACCAACCTAACAAGTTCAGTATCTGAAATTGGCACCACCATTCAACCC
CCACCAAACACGTTGCATGCCATACAACAAATAAGGAATAGGCACAACATAATACGGTCT
AGATGGAACAAGCAATATTGATAGAGCAAAACATCAAAATTACAATGATGCAAGGACGAA
GCTGCTGCTCACTAAACAAGATTTTAGAGGTCAAAATTGATGCTAGATGCTAGTCTTACA
CATGAATATTACAACCATATCCTCGCGAGTTGAAGAATAAAGCATAAAATTAAACGCAGA
ACAAGAATGCCCAAAACAAGTTATTTGCATCGATGTTGAGGTCCTCGGATTTTTAACTTT
GTCCTAGTGTATCGAACAAAGCAGCTTGTGGATAGATAATTTGCAATACGATGTATTGAT
TAGGGGTGCTGGTGCACATATATATAATGCAAGTGAAGGCCTCTACCTCAACTATATAAG
ACTAGGAGGTGGGCCACAACTCCAATACACGCACAACATAAATACATACTCAACACTCCC
TCGCAGTCGAAGCGTCGCCGGAGACATAGAGACTGGACCGGAACTCCTCGAAGACGGGAG
TAGGCAATCCTTTAGTCATCACATCAGCAAACTGTTGCGTCGTCGGCACGTGAAGAACCC
GAACACGACCAAGGGCAACCTGCTCGCGCACGAAGTGAATATCGAGCTCAATATGCTTCG
TCCGTCGATGGTGCACCGGGTTGGCGGAGAGGTAGACCGCGCTGACGTTATCGCAGTAGA
CGAGAGTGGCCTTGTGAACATCACAAAGCAACTCCTGGAGCAGCTGACGTATCCAAGAGC
ATTCAGCCACGACATTAGCCACGGCGCGATACTCTGCCTCGACGCTGGAGCAGGAGACCG
TGGGCTGCCGCTTCGATGACCAGGAGATCAACGAGGGCCCAAGGTAGACGTAGTAGCCTA
ACGTAGAGCGCCACGTGTCAGGACAGCGAGCCCAATCAGCATCCAAGTAGGCCACGAGGT
CGGTGGAGGCGGAGGCCGTCAGGGTGAGTCCCAAGGACATGGTGCCGCGTATATAACGGA
GAATACGCTTCACTAGAGTCTAGTGAGAGTCACGCGGGGCGTGCATGTGGAGGCACACCT
GCTGAACAGCATACTGTAGGTCGGGCGAGTCAGCGTCAAATACTGTAAAGCACCGACGAT
AGAGCGATAAAACGCTCCATCGGACGCAAGAGACCCCTCCAGAGCAGAGACCTTCGCCTT
CGTGTCGACGAGGGTGGGCGTCGGCTTGCAATTAAGCATACCGGTATGCTCGAGAAGCTC
GTGGGCGTACTTCTGCTGATGCAGAAAGAAACCGTCGGCTCGACGGATCACCTCGATGCC
GAGAAAGTAGTGCAGGGGGCCATCATGAGACATTCTTAACTTCTCNNNATCAAGCTTCCT
TTGAAGAAATTGATAGGAAAGTTTCTCATAATCAGCCAAGAGTGTGCCATAACAATCTTG
AAGATTATCAAATCTNNNNNNNNNNNNNNNNNNNNCTTCAGTGAGGACTTGAGTACGATT
TGTTTCATCATTCAATAGATCATCGCTNNNNNNNNNNNNNNNNNNNNNNTTTTCAATGGC
ACTTTGTTGCTTATTGGCAATGTTGGCGAGTTTAAAGTAACTGGGTTTTTGATAATCATC
AGGTTCACAGTCAATAGAATCAGAGGAGGGGGTATGGTTTGATACCTTTGAACGTTTTGC
CATGAAGCAATAGGTTGGAGCAAAGTCATCAACATATTCATCAGTGTAGTTGACGTTGTC
CTTTTCTTCAAGGTTGAAGATTGACTTGCTGATGAATCTGGTAGCGAGTGCAAGACTTGC
CACACCACACTTTGAATCCTCTTCAGAGCCTTCCTCTTCATCACATTCCTTAGATTCTTC
TTCAGAATCCATTTCCTTGCCAATGAGTGCCCAAGCTTTTCTAAAACCGTTCTTCTTGTG
TGATGAGGACTTTGAGGATGAGGGCTTTGAAGATTTTTTCTTTTTCTTTGAGTCATGAGA
ACTTTCATCCTTGTATTTCTTCTTCCTAGATTCCTTCACCCAGCGAGGACAGTGAGCAAT
GCAGTGACCAGATTTCTTGCATTTGTGGCAGGTTCTTTTCTTGTAATCCTCGGATGAAGA
TTCTGATTTCCTCATACCTCTTCTTGAAGATTTACCGAACTGACCACGCTTTGTGAACTT
CTGGAATTTCCTTACCAGAATAGCAAGTTCCTATCCCAGTTCTTCAGGATGACTACAAGC
GTGGCAAGTTAACTATTCAAGCTAAGGCAAGCTATATGGACCAAGATTGCAGTCAGATTC
TTCAACCTCAGATGAGGAAACAACCTTTGCCTTNNNNNNNNNNGGTCTTGAATAGCTTGG
TCCATATATATCTCTATTTTCTTGTAGTATATTCTTGGTCCATATAGCTTGCCTTAGCTT
GAATAGTTAACTCGCCACGCTTGTAGTGATCCTGAAGAACTTGGGCACGAACTTGCTATG
CTCGTGAGGAAATTCCAGAAGTTCACAAAGTGTGGCCAGTTTGCAAAGTCTTCAAGAAAA
GATAAGATTAAATCAGAATCTTCATATCAAGACTACAAGAAAAGAACGTGCCACAAATGT
AAGAAATTTGATCACTACATTGCTGACTGTTCTCGCTGGGTGAAGGAATCAAGAAAGAAA
AAATACAAGGATGAAAGTTTTGATGACTCAAAGAAAAAGAAGA