Contig Data
morexGenes
Links



Map Locations of contig_48180 (4723 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_48180

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63956 2 714 bp AK371696 Available Available None





CDS Structure of MLOC_63956






Contig Sequence (4723 bp)

>contig_48180 4723 assembly3_WGSMorex_rbca.fasta
TTCTTTTCAGTGTGCATCATATCGATGTTGTGTGGAAGAAGGNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAGCATGGCTTGTGAGTCCAGGCGTATTCTGAATTATACCCCTTGAAATAC
TCTGGACGTTACCAACTTTATGTCGAAGTCATGCAGTTTTACACGCTCATGACCGAACTG
CATAATATTACCCTCCTCTATCTTTGATACATGGAAATCTACCAAGTATTTTTCCCATCT
GCGGTAATTCGATTGCATACCGATATCACCATCCGGCATACATCATTGGCCCCTCAACAT
ATACTCTCTCTCTCTTCCTAAATATAAGTCTTTAGATGTTTCACTAAGGAATTACATACG
GATGTATATAGACANACTTTAGAGTGTAGATTCATTCATTACTTTAAAGTGTGTTTAGTC
CCCTAATAAAATCTCTAAAAAAGACTTATATTTAAGAACGGAGGGAGTAGTTGGGATCTA
TGTGAGAAATAATTGTATTTCTATCAATACCTTAAGCCCCTCGCATGCGGAGTTATTCAA
GGTCGGTATGTTGATTCAATGAGGAATATTTCCAGGCATTAGGGAAAGAATTCAAGTATC
ATGAAGAATGCGAGAAAATTAGTGAAATGTTAAACACATTTCTGCCTCAAATCCACGTGC
CCGAAGATCTAAACCATGCGTTCGAAAGATTTGTAACACATTGCAAATAACATGTCAAAT
GCATTTACTTATTATAAGGGTGACACACAATCCTACATCGTGCAAACAAATGCCTAGAAG
AATGATGGTACCAACAAAAACCACTCAAACAACAACTATTATATGTTCAACATTTTTTTA
TCTTTCTCACTGAGTTTGAAGAAGTTTTGATAACATATCAAATATTATACTACTCACATT
TTTTCCACAGGAGTTTGAAGGAGCTTTTAAGATGATAATATCTTAAAGGATAGCATAGAT
TAGGAAAAGTGTTGAGATTTATTTAACCCATGTATTAATTAAGGAGAATCTTCACTATCC
CTAATTGTCACTTACAATATCCCTAACTGCCACTTACAAGAGACACGACTGTTCGCTTGT
GTCTCTCCAGACCGACTGTTGGATGCATCCCTTCGAAACTATATATACTTGTACTCAATC
ATTAATAAAGACAACGATTCTTCTCTTGTTTTTCTGTCAACACGGTCCACCTCTTTCCCT
GCAGCACGTCACGTGGTTATCCAATGGTTTTCATGTCTCCTACACCGACATTCCCTCTGA
TTCTCACAAGTCTATTTCCTAAGTCTAACCCCGTAATAAACCCCCACCACTAATTCGAAT
TCCCCCTCCCTAAGATTGCCAAACATTCTGTTAGTGCCACAATCACAACTCCTTTTTTCA
GTGTTCCCTAGAGCTGGTGATAGTCTTTTAATTTCCCTTTCCGACTCCTTTGATTTGTAC
ATATACTACCTTTTATTTAATAAAAATTGCCATCAAACTACTGTTCTATGGCTTCGGGGT
AAAAATAAAACCATGGGCAACCTATATACATGGTGTTTCAATACTAGAGCACCACATATC
TAATGCAAAATTCAAGATGAAATAAGAATTCTGACAAGCATATAGTGAAAATTCGCTACA
AGACGTCAAATTCAAGATAGCCTAAGCCTGAGTAAATCACTACATCACCTTAAGTCATAA
ACCTACAGAATGTCAATAAGTAAAGCCTGATCATTCAGCTCAGCAACGTTTTACAGTGCC
AGCAGGCAATTGATCAATCACAAACAAGGCAGAAACTTGAGATTGATATCAACTCTGCGC
CTCTCTCAAGCGAGTGATCAGTTCGTCCTACATATGGAAGGCCACCATAATATTAGTGTT
TATTTGGATGAAATGACAATTCAAACTGGAAAATACATTCGTAAACAAAATATATATTCA
TGAAAAGGTACAAGAGCACTCTACAATACAATAGTAATACCTCTGTTTTTATAACACACG
TAGTGGCTACAATACTGTGAAATAGGACAAAACCCGTGATGTGCTACAAAATACTGTGAA
ATAGCATAAAACCCGAGATGTGCCAGCACTATATGTAAAACAACAATTGAAAGAAAAAGC
ATCACTGGCACTGTCAGAACAGTTTGCTTTCCAAAACCTTTATATTTCATCCTTTTATTC
TAGCAAACAAAATACTTGCATCACTGATTTTTGGTTTATGTCCACCAATTAATTTCTACC
TTCGAGGCTCAATTCTGCTAATAATTGCAGAATACATAAACTAGCATGCTAGATAGTAGG
TAGGTTTGTCAGAACGTTCAAATATCGCTTCGCATACACTGAAATCACTACAAAATGAAT
TTTCAAGCATGTGGAGCATATTCAGAAATATCCAAGATGTCAAATGTACACGATATATCT
GATATTCAATTAAGTTCTTTTGAAGCAGAATTCAAATGTTTATACCATTGATTAAGATTT
TTAATTCTATGAACTTTAAATTCAGAATAAATTTCAAGCATGATATGCCTTTTTCCCCTT
GGTTGTGAGGCCTCTTTGTCGGAGAAGTGCACGCAACCTCTCTACGGTGAAGGACTGCAG
TGTGTGCTGTGAAAAGCCAGATATTGCTTCCTCTGCAAGATTAGAGTATCCATCAGAGTG
AAAAACAACACTGCTATCGGGTTTTCGAAAAAGAAAAGAGCACACTAATTTCTCATCTTA
AAATGCTAAAGCATGACTGGTTAACAAACATACTGCTTATTGTTGAATGTATGAAAACAT
ATCTGGGTACTATTAAACCTAGAACTAATGGCTCGATGGCGTAAAAATGGTGTTCTGGGT
AGATTGGTTAACACCATACATAAAAACAGAATTTGTGGTAAGAAGTTGGATGGAAGCTGA
CAACATATATTCAATTCTTCACCAAAATCAGACATCATCGGCTTCTGCTGAACAATGTAT
GACAGATATCCCTTCGCTCTATCTGCCTCCAAGATTCATATCTTATGTCACATGCATTTT
TTTCAGAGATGATCAAAATAGAAGACACAGAGGTGAAGATAAAAGGTGAGAACATGATCA
AGGCACTTACCAGAGGAAGGCAGTCCGGAAGAACTGCCCAACTTGGGCTTTTTTGACGAC
TTTTGCACACCCAAACTTCTGGCAGCACATCTACAGAAAAGAAATACAGCTTACTTTGAG
AGTGAATTTATTATTTATGTGATGCTAAATAAAATAACTGATAAGCCCACGAACAAAAAT
AAAAGCCTTTTTGGAGCGAAAGAAACACCAGCTTTATAAAAATCTTGACAAGTGAGCATA
GTTCACTTTATTGGGGGGGTGGATGAATAACCCCGCTGCCTAGGTTCAACTCCTCGCAGA
TGCGAATTTGGATTCTTATTTATACCGTAGGGGTTTTCCTTACGGTTATCTACCAAATAA
TTTGCATAATCCATTTCATAACACGTGGAGATTGCTGATGATCAAATTGTAAGTGTCAAA
AAGAAATTTAAAGTTGGATCATGGAGAGCACAGTTTTAAATGTGTAGGGCATCTCCAAAG
CCAACCCTCAAATCGCGCACAAACATCCGGACCAAGCTGTCCGGACAAAGTTTGCCATCC
AAGGCCGTCACACATACGTCCGCACACTCATCCGGCTATCCGAAATCCCGCAAACCGGAC
GCGAATCTGTGGGAGCTTTGCAGGCGTCCAGATCTCTGGACACCCCCGACCCACACGAAA
CCCAACCGGGTGCCCGCGTCTTTGTCCGTTCACTCTTGCTCTGCATCCGCTTCACCCCTG
GCAGATGCCGCCGCTATACTACCCCGGCTGCCCACCAAGGCCTTGCAGAAGCTCCGCTGC
TCCACCTGCTCGCCACACCCATTTGCCTATGCCCTCATTGCACCTCAGTGTTTAGCGAAA
TGCTGGTGCTAAATTTTGATATTTTTTTCCCTTCTTTCAAGCAATGGATTTGGACATGGA
GTACACCTATGGCAACTTCATTGAGTCGTCCAACAACTCGTCTTACTAGGAGGATTATGC
AGATGACACAACGATGATGTGCGTAGGCCTTGCACACGCAGAGCGGGTGGAAGAGCGTGT
TCTCGGTTTCTAGGGATCGATTGTCAAGTCATGAATCCGAACAGGGCACAAGGGCATTTG
ACGCAGATGGCAACTACTTCTCGCCGGCGCTTTCGGATGCAGAAAAATGTGTTTGATTGC
CTCTACAATGGCATCTAGGCCTACGATGACTACGGGCGTGTTTGGTTTCCATCCTGTAGA
AAAAAAGCCTGGCCTGCAGTGTGCCTGGAAGCTGCCTGGGTCCTGTTTGGTTGGATGACC
TGGTCCTCACGTATAGCCTGGACTGGAGTAACTGCAGGGACGCTTAGCTTGGCCAGCCAT
CCAGGTACACGATTAGCCTGAGCCAGGCTACCCAGATCGAACGCCTGGCAACGAAAATTG
AGGTGCCTGGCAACCAAAAGCGAGCAACAACAACAACAACAAAGCCTTTAGTCCCAAACA
AGTTGGGGTAGGGTGAAACCCATAAGATCTCGCGACCAACTCATGGTTATGGCACATGGA
TAGCAAGCTTTCGTGATGCTCCAATCATTTAGATCTCTCTTTACGGACTCTTTCCATGTG
AAGTTCGGTCTACCCCGACCTCTCTTAACATTATCAGCAAGCTTTAGCCGTCCGCTATGC
ACTGGGGCTTCTCGAGGCCTGAATATGCCCAAACCATCTCAGA