Map Locations of contig_48173 (5556 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_48173

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_63947 1 222 bp AK371653 Not available Available None
MLOC_63948 1 275 bp AK371653 Not available Available None





CDS Structure of MLOC_63947






CDS Structure of MLOC_63948






Contig Sequence (5556 bp)

>contig_48173 5556 assembly3_WGSMorex_rbca.fasta
TTGGGCTTGTTCTTGGAGCCCGGGGGCCGGCCGCGCGGGCGCCGGTTCGGCGGCACCACC
ACGGCGCCCTCCTTGGGCTCGTCGTCCTGCTCCTGCCCGCTCCCTCCGCCGCTGTGGCTG
CTCTCCCCGTCCAGCTTGGGTGCCGCCATGGCCATGGCGTCCTCCAGCTGCTGCTGGTTC
TGGTTGCTGTTGCTGGCGAGGCCTGATGCAGACGGCGCCTCCGCCAGCCGGCCTTCGTCC
CACCACCTGTTGGCCATCTGATCGATCGATGGACCTAACCTAACTCTCTCTAAGTTATGA
TCTGTGTGCTTGCTTCCTTTCTCGATCTGGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTGGTAGCAAGCTTTCTTGACTAATTACTTGTCTTGTTGCCCAGCTAGCTTCACC
ATCATGCCCTGCTAGCTTTCTCGATCTGCATATATACAAATGAAGATCAACACACAAGAG
ATCCAAGAAAACTAGCTACACATTAACATGGACATGCTGTAATCAAGAAATCAAGAACAA
TATATATGGAACAAGAAGAGGATGCACGTACTACTTGTTTACAGAATTTATTAAGCATAT
GTGTGGGGATCGATCGGATTGGGAATAAGCTCCTTGTTATCTTTTGATTTCATGAACAAA
GCAGAAATGGAACTAAATGGGCTGGGATCGATGACCCTGATCGATCTAGCTAGCTAGCTA
GGAGATGAAGAAGAACTACATGAGTACCTTAATTAACTATTCGAGAATTAGCTAGCTAGC
AGCTCCCATCAATCGATCTAGTATATATGATCTTGGTTTCCACTTCTTTTTCTTGGTGTG
CACTAGCTGAGGCCTCAGCTGGTGTGTGTTATATATATATGGGGGGATCCAGAAAGCTAG
ATAGATAGAGGGTAGATGAAGAGGAGGAGGAGGAAGACTTGCTTGCTGCAAAGAAGCTGA
GTAAGCAAGCTTTTGTCATGGAGAGGGATGCATGAGGTGTGTTGATGGGTACCTTCTAGT
TGTACTTGTTCCACACCTGCCTCCAAGCTAATTCATCCCACTATAGTTATAATTTTTGTA
ACTTCACTATAGATCGATCGATATGTATGTATGTATGTATACTAGTACTCTATCAGTATG
TGTACATGGCATTGTTCTTCTTACAGAAAATTAAGGCTAAGTGCACCCCTATAAGTTGGT
TTACTATATTTTACGGTGGGTAACGTGGTGGGGAGTACAACTCCCACATACAAAAAATAC
TTTGTATGATTGCATGGACCACTATTGGTTCCATTTTTTTAGCTGCCTATAGGTATTCTA
CTTAAAAATGAGTCACCCTTCTCCCATCAAATGTGGATTGGCATATATTACCAGCCCCAC
CAACCGGTTTATTTATGTTAAATTAATACAAGGTATACTTTTCAACGCCGTGAATTTGAA
CACCGATTTCATGATTTGTTTATAAAAATGAAAATGACCGTCGATCCAAGTAGAAAGATC
TACCATGTATGCACAAAGATTCACGACGGGGTTTGGGAAGATCTTCTACATAACAAGTAT
GTGGGCTCTAAGGCACTCTCGCCAGTCCAGTCAAAACTCGACGACCCACACTTCTAGGCC
GGTTCGATGAAGTGAGGCAATTTTTCATCCGTTTTGAAACCCTCACACGTAAGATTTTAA
CAAGACCCGTGTCAGGAAAATATCGCACTTTGTGAGAGGTACCCATTGGGGTTTTCATGT
TGTGCATATAATTAAGCATGTTACAATTGCGAAAGTCTTAGGTATATATATATCCCACCC
CCAAATGTGACCTTTAAGTTTGATCAAATTGGCCCATGGCTAGTAGAACAGTTCCAATTC
CTAGATCAAGGTATACTTTTATAGCTACCTCTAAGTATATACTTCCAAATAAACCATCAT
ACCATCAAATGTGGATTGGCATATATTACCAACCCAACCAAATTGTTTCATTTTATGTTA
AATATAAGATGTACTCCCTGATAAGAGCGTTTAGATCACTATTGGGAATACTAGCTTCTC
TACGCCGTGATACATCTCAACGCTGATTTGTATTGGAAAATGGATAACAGTCGTGGATTC
AATAGAGGAATCTAAATGATAATATGGCCTACTTCTTTTCTTACAAACATGAGATTAAAC
CACCAACCTTTCTATCAGTCGGTGCATGGAACAGTTTATTAATTAATTGCAAGTGCGTTA
GAGAACGTAGTAGCAATAGAGTATCAACATATATATACAACTCACGCATCAGAATTTTCA
TTAAAATGACAGAGGCAGACAATACCGGATTATTGGGTATGCCTTAATTAATTATGCGTG
AAAGACCATTATTTGGTGTGGTGTTGGTGAATGGTGGGGTCAATTATACTATGTATGCTC
ATATATTTTACAATGGAACGAGTGCATTTAGGCTGGGTAGGAGGGAGATTAGGACTCCTT
GCAAGAATCGCATGGACGCATATGTAGCTTGATTTATTTAATTTATTTTTCGTTGCATGC
ATGCTGACGTAGGTAGGTAGGTATCATATGTAGCTTGATTTATTTTCTTCCACCTATCTG
TGCTTTGTACAAACGGGACAGCTGTTGCTTGTTTGCTAGCTAGTGAAAATACTAGCGTTT
TACAATTATATAAATACGTTGCAAAAGCGTGCTAAAAGAGATTTGAAATGGTTAATGTAC
TTTACATATATGAACCATGTATTTGTTTCTTTTTTTTCTTTTTCTTTTTTGCGAATCATG
TATTTGTTTCTTTTGACTTGCCATGTTCATATACATGTACTTTACACCTTGTAGTTTAGA
AACATGATAAGTACAAACGCAGACACTTACATACGCATACCCTATGATCACTTCCGAAAG
GCCGAACCAACAAATTTTAAGATTGATAAAATCGTCATAGGCACCTTGTAGTTGGCAAGA
ACAACATCTTGTACATCAACTCGGGTGGGTTGGTTCCTTAAGAAGGAACATAACCATCTG
AGCTAAGCTCACTTCGATTCATACAGTATGTTGATGAAAGTCCTTAAAGAAATTTCAATG
CTTACAATATCACGTCAAAGAGATATGATCGAAAGGAATTACACGTGCATAACTGGAAAT
ACCATGAAAAATATACTCCCTCCGTTCCTAAATCTAAGGGCCTCTTTGATTTGAAGGATT
TTGAAAACGCAGGAACAGGAAAAATAGATGGTTGGAGTGGCATGTCCATTTGAACCATAT
AGGATTAGGAAGGAGTGTTTGATGCCACAGGAAAAAACAAAGGAATTGTAAAAAGAGGTT
GGAGTGGATGTTTGATTTTCTATGAAATGTAGTACAAAAGATCCCATAGGAAAAATTCCT
ATTGAATCCAATCCTATGAATCAAAGGACCAGGAAAAATTCCTAAGGATTTAAATCCTCC
AAAAATCCTATAGAATTCCTTTGAATCAAAGAAGCCCTAAGTCATTTTAGAGATTCTATT
ATGGACAACATACGGATGTATATAGACATATTTTACTTCATATGAAGGTCGTAGTGGAAT
TTCTAAAAACGACTTATATTTAAAAACGGAGGGAGTATATAGTAGAAGTAGCTTGCATTA
TGCATTATGGCTTTGCTCACTGAAAATAATCACGTGGTCGTATGATTCACTGTTGTTGAT
TAAACCATTCGAACACTTCCAAAATCCGTCCTACTTGTTAATTCAATAAATTAATCACCT
GATTAGACTAGGTACGGGTCCCAATAGTTAGGGCTAATACTCTGTACAATATGGCTGTCA
CACTGTCGTGTACCACCCATATGGATGTGTTAAACATGTACTCCCTCCGCCCCAAAATTC
TTGTCTTAGGTTTATCTATAAATGGATGTATCTAAATACTAAAACATGANNNGATACATT
CATATCTAGACAAATCTAAGACAAGAATTTTGAGACGGTGAGAGTATAAACCGTATAGGG
CTAGGACTTTGTGTGCGTGTGGTTGTTGTAATCTAGGACAAGTAGTTGGGATTCTTTCCT
CCAGGATCGCTACCTCCTTCTATGCTCCTTCTATGCAGTCTTGGAGATCAATCCAACGAC
CGGCTCCTTCTGTAATCTGCGGCCTCAGATCCTTTATAAACAGGCACGCGTCCCTCCTGA
AATGCATACGCTTCTACGATACTTTTCACATGGCATACAAACCTTTCTCTTTCAACGCAT
CTAGGTTATGTTGTCCTCCTCCCCCCTCGTCGTCATGGCCGCCCCTTTGCTCGCACCGCT
TGGCCACACCATCACGGAGAAGTCCACCCATGAGAACTTTCTAGCGTAGAAGGCACAAGT
ACACCCTCATATTCGGGCGACGAGTATGATGGGGTACCTGGACGGCTCAATCAAGGAGCC
AACTGTTGTTCTTCTCTCTGAAACGGAGGCCGCTAGGAAGAAGCAGGTCATCTCCAAACC
GAATCCAACATGTCGTTTGGGTCACGTAGGATCAACAGATATTGACGTTTCTGCTTGCTT
CTCTTTCTCATGAGGTTGTGCTCCAATTTTCAACCTTCAGTCCTCCTGCTGGCATAAGGC
AAGCACTTCTCTAGAGCTTCTCCTTACAATCCAGGGAGCGAATTATTCAGCTTCGCTCCG
TGCTCGAGAACACATGCAAGGGAGATCCTTCTGTTGCCTCCTACTTCACCAAGATGAAGG
GGATCACCGATGAACTCGTTGCCGCAGGGATGACGCTCGAAGAAGAAGATGTCGTCTCCC
ATATCCTTCAAGGGCTGCTGCACGAACCCCACTACAATGGGTTCGTGCCTGCCATCTCCA
GTCGTCCCAAAACTGCGACGCCGATCAACAACAGTGAGCTCTTCTCGCTGATCCTAGCAT
TGGAGGCTCGCATCACGGCGCAGCAAGCAACCTTCTCCAACCACTCTGCCAACCTCGCGT
CTCGCGGCCGTGGAACTACAGCCGCAGCGGTCACGATGGTGGCAGCAGCGGCGGGCGTGG
CGGCTACAACAACAACCGGAGAGGTGGTTTCCGCTACCCCGACAACGCTGGCGGTGACTC
TCGTGGTGCGCCGCGCACGAGTGGTGGCGATCAAGGTGACCGCGAACACTACCAGATCTG
CACGGAGGGAGTTGATACGTCTCCGCCGTATCTACTTTTTCGAACACTTTTGCTCTTGCT
TTGGACCCAAACTTACATGATTTGAATGGAACTAACCCGGACCGAGGCTGTTTTCAGCAA
AATTGCCATGGTGTTGTTTTTTCTACAGAAATCAAAGTTCTCCAAATGAGTTGAAACTTT
CCAAGGAATTTTTATGGAATTAATAAGGAATATTGGAGCAAAGAACAACCGAGACGCCGC
CACCTCCTGGTGGCCCATATGACCCTAATTCCAAACCTATAAAATCACATTCATGGAGAA
AAAAATCAGAGAGGAAGAATCATCACGTTTCACGAGATGGAACCGCCGCCACCTCCTGTT
CTTCATCGGGAGGCCATATCTGGAGTCCATTTGGGGCTCCGGAGAGGGGAATATTCGGTC
TTCGTCATCACCACCCTCTCTTCATCACCAATTCCA